Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g011150.2 Solanum lycopersicum HOM05D006375 ORTHO05D008188 0.0e+00 1810.4 929 100.0
Sopen11g005910 Solanum pennellii HOM05D006375 ORTHO05D008188 0.0e+00 1781.9 929 98.6
PGSC0003DMG400015671 Solanum tuberosum HOM05D006375 ORTHO05D008188 0.0e+00 1753.4 929 97.0
Nitab4.5_0000201g0170 Nicotiana tabacum HOM05D006375 ORTHO05D008188 0.0e+00 1529.6 946 84.7
Nitab4.5_0010112g0040 Nicotiana tabacum HOM05D006375 ORTHO05D008188 0.0e+00 1506.5 969 81.9
CAN.G222.25 Capsicum annuum HOM05D006375 ORTHO05D008188 0.0e+00 1192.9 815 78.4
Peaxi162Scf00305g00616 Petunia axillaris HOM05D006375 ORTHO05D008188 1.4e-296 1023.1 674 80.0
CSS0034734 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 3.5e-284 981.9 897 59.3
MSTRG.2615 Avicennia marina HOM05D006375 ORTHO05D008188 1.2e-279 966.8 980 55.4
Rhsim10G0177200 Rhododendron simsii HOM05D006375 ORTHO05D008188 3.4e-279 965.3 982 55.3
Hma1.2p1_0158F.1_g070200 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 3.7e-278 961.8 851 60.2
Actinidia06495 Actinidia chinensis HOM05D006375 ORTHO05D008188 1.2e-276 956.8 995 55.0
Ciclev10010990m.g Citrus clementina HOM05D006375 ORTHO05D008188 1.2e-273 946.8 991 54.8
Lj4C263T11 Lonicera japonica HOM05D006375 ORTHO05D008188 1.0e-272 943.7 995 54.8
DCAR_003431 Daucus carota HOM05D006375 ORTHO05D008188 1.6e-268 929.9 960 54.7
Cc07_g13460 Coffea canephora HOM05D006375 ORTHO05D008188 2.0e-268 929.5 952 56.3
QL02p058134 Quercus lobata HOM05D006375 ORTHO05D008188 2.0e-268 929.5 992 54.4
Cfa007814 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.7e-268 929.1 1002 53.1
Potri.004G087400 Populus trichocarpa HOM05D006375 ORTHO05D008188 3.0e-267 925.6 990 53.8
QL93p0100_0515 Quercus lobata HOM05D006375 ORTHO05D008188 5.6e-266 921.4 992 54.1
Sabra04G0058300 Salix brachista HOM05D006375 ORTHO05D008188 9.5e-266 920.6 967 55.4
TAR374G0480 Trochodendron aralioides HOM05D006375 ORTHO05D008188 2.0e-263 912.9 1004 53.3
Sc14g0006560 Simmondsia chinensis HOM05D006375 ORTHO05D008188 1.3e-262 910.2 997 53.7
SGA_v2.0_scaffold2G00936 Striga asiatica HOM05D006375 ORTHO05D008188 1.7e-262 909.8 978 53.1
Manes.01G118300 Manihot esculenta HOM05D006375 ORTHO05D008188 2.9e-262 909.1 918 55.9
SalBow3G0693 Salvia bowleyana HOM05D006375 ORTHO05D008188 8.3e-262 907.5 995 54.2
HanXRQChr14g0444701 Helianthus annuus HOM05D006375 ORTHO05D008188 2.4e-261 906.0 939 55.4
Thecc.04G114800 Theobroma cacao HOM05D006375 ORTHO05D008188 3.2e-261 905.6 970 53.0
Haze_14261 Corylus avellana HOM05D006375 ORTHO05D008188 4.1e-261 905.2 1057 50.7
Migut.H02262 Erythranthe guttata HOM05D006375 ORTHO05D008188 6.0e-260 901.4 849 59.0
Nn3g18305 Nelumbo nucifera HOM05D006375 ORTHO05D008188 7.8e-260 901.0 980 52.7
Atru.chr1.1908 Acer truncatum HOM05D006375 ORTHO05D008188 1.1e-253 880.6 981 52.9
LjContig00141g0022245 Lotus japonicus HOM05D006375 ORTHO05D008188 7.1e-253 877.9 924 55.4
vmacro07694 Vaccinium macrocarpon HOM05D006375 ORTHO05D008188 6.0e-252 874.8 966 51.7
CANSAT64G0280 Cannabis sativa HOM05D006375 ORTHO05D008188 7.8e-252 874.4 993 51.3
ECA238G1164 Erigeron canadensis HOM05D006375 ORTHO05D008188 3.3e-250 869.0 959 53.4
GSVIVG01030782001 Vitis vinifera HOM05D006375 ORTHO05D008188 5.6e-250 868.2 956 52.7
Aqoxy3G00081 Aquilegia oxysepala HOM05D006375 ORTHO05D008188 9.5e-250 867.5 920 55.0
RcHm_v2.0_Chr3g0493161 Rosa chinensis HOM05D006375 ORTHO05D008188 1.1e-248 864.0 973 51.0
arahy.Tifrunner.gnm1.ann1.WVM8AG Arachis hypogaea HOM05D006375 ORTHO05D008188 1.8e-248 863.2 938 53.4
EL10Ac6g15274 Beta vulgaris HOM05D006375 ORTHO05D008188 5.8e-247 858.2 854 55.3
arahy.Tifrunner.gnm1.ann1.EH3TRU Arachis hypogaea HOM05D006375 ORTHO05D008188 4.9e-246 855.1 984 51.6
Gohir.A07G078100 Gossypium hirsutum HOM05D006375 ORTHO05D008188 4.9e-246 855.1 851 54.6
AUR62003604 Chenopodium quinoa HOM05D006375 ORTHO05D008188 7.1e-245 851.3 872 53.9
MD17G1258300 Malus domestica HOM05D006375 ORTHO05D008188 3.5e-244 849.0 922 52.5
Hund04476 Selenicereus undatus HOM05D006375 ORTHO05D008188 2.3e-243 846.3 873 54.3
AUR62017915 Chenopodium quinoa HOM05D006375 ORTHO05D008188 6.6e-243 844.7 833 55.6
TWI53G2003 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 1.5e-242 843.6 913 51.9
Lalb_Chr04g0251361 Lupinus albus HOM05D006375 ORTHO05D008188 2.5e-242 842.8 942 52.5
Gorai.001G088500 Gossypium raimondii HOM05D006375 ORTHO05D008188 2.1e-241 839.7 848 53.9
VMungo0647G2002 Vigna mungo HOM05D006375 ORTHO05D008188 4.7e-241 838.6 968 51.9
Glyma.14G214000 Glycine max HOM05D006375 ORTHO05D008188 1.1e-240 837.4 933 51.7
TPR.G8261 Trifolium pratense HOM05D006375 ORTHO05D008188 1.1e-240 837.4 963 50.9
Gohir.D07G082900 Gossypium hirsutum HOM05D006375 ORTHO05D008188 6.8e-240 834.7 848 53.7
Medtr5g078360 Medicago truncatula HOM05D006375 ORTHO05D008188 1.5e-239 833.6 939 51.5
PSO478G2715 Papaver somniferum HOM05D006375 ORTHO05D008188 3.4e-239 832.4 887 53.0
Sed0006511 Sechium edule HOM05D006375 ORTHO05D008188 1.4e-237 827.0 1000 48.8
PGR004G2253 Punica granatum HOM05D006375 ORTHO05D008188 7.1e-237 824.7 916 51.1
COL.COLO4_05994 Corchorus olitorius HOM05D006375 ORTHO05D008188 2.3e-235 819.7 966 50.3
TWI74G0084 Tripterygium wilfordii HOM05D006375 ORTHO05D008188 3.3e-234 815.8 876 51.9
FvH4_1g28770 Fragaria vesca HOM05D006375 ORTHO05D008188 1.6e-233 813.5 959 49.9
PSO017G5819 Papaver somniferum HOM05D006375 ORTHO05D008188 4.8e-233 812.0 886 52.3
CsaV3_5G024160 Cucumis sativus L. HOM05D006375 ORTHO05D008188 6.9e-232 808.1 996 48.5
CiPaw.03G071800 Carya illinoinensis HOM05D006375 ORTHO05D008188 9.0e-232 807.7 960 49.9
Hma1.2p1_0158F.1_g070190 Hydrangea macrophylla HOM05D006375 ORTHO05D008188 1.5e-231 807.0 749 58.6
Prupe.3G161000 Prunus persica HOM05D006375 ORTHO05D008188 5.8e-231 805.1 964 49.0
FAN19G0463 Fragaria x ananassa HOM05D006375 ORTHO05D008188 1.9e-229 800.0 970 49.2
Carub.0006s1484 Capsella rubella HOM05D006375 ORTHO05D008188 2.3e-227 793.1 910 51.4
FAN23G0218 Fragaria x ananassa HOM05D006375 ORTHO05D008188 3.0e-227 792.7 991 48.0
AL6G27600 Arabidopsis lyrata HOM05D006375 ORTHO05D008188 1.1e-226 790.8 922 50.2
Phvul.008G233100 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 1.1e-226 790.8 970 50.6
THA.LOC104827188 Tarenaya hassleriana HOM05D006375 ORTHO05D008188 1.9e-226 790.0 945 49.4
Ah.02g121850 Amaranthus hybridus HOM05D006375 ORTHO05D008188 2.5e-226 789.6 893 51.2
Cpa.g.sc116.55 Carica papaya HOM05D006375 ORTHO05D008188 2.5e-226 789.6 951 50.1
CSS0009955 Camellia sinensis var. sinensis HOM05D006375 ORTHO05D008188 4.3e-226 788.9 714 60.6
AT5G16630 Arabidopsis thaliana HOM05D006375 ORTHO05D008188 1.3e-225 787.3 918 50.8
MELO3C022863.2 Cucumis melo HOM05D006375 ORTHO05D008188 6.9e-224 781.6 913 48.8
BcaC03g18507 Brassica carinata HOM05D006375 ORTHO05D008188 9.0e-224 781.2 923 49.8
Aa31LG11G13020 Aethionema arabicum HOM05D006375 ORTHO05D008188 4.5e-223 778.9 965 48.5
Thhalv10012651m.g Eutrema salsugineum HOM05D006375 ORTHO05D008188 7.6e-223 778.1 911 50.4
ATR0564G422 Amborella trichopoda HOM05D006375 ORTHO05D008188 2.4e-221 773.1 902 49.8
Psat2g047400 Pisum sativum HOM05D006375 ORTHO05D008188 1.6e-220 770.4 830 52.9
C02p08510 Brassica napus HOM05D006375 ORTHO05D008188 2.7e-220 769.6 930 49.4
ClCG01G008800 Citrullus lanatus HOM05D006375 ORTHO05D008188 2.5e-218 763.1 1000 46.9
Sp6g27540 Schrenkiella parvula HOM05D006375 ORTHO05D008188 3.3e-218 762.7 916 48.7
BraA02t05338Z Brassica rapa HOM05D006375 ORTHO05D008188 9.6e-218 761.1 848 51.2
A02p03690 Brassica napus HOM05D006375 ORTHO05D008188 1.1e-216 757.7 887 49.6
CARHR196570 Cardamine hirsuta HOM05D006375 ORTHO05D008188 4.0e-216 755.7 919 48.1
Lsat_1_v5_gn_2_69340 Lactuca sativa HOM05D006375 ORTHO05D008188 3.2e-213 746.1 946 49.6
BolC2t06767H Brassica oleracea HOM05D006375 ORTHO05D000255 4.2e-213 745.7 939 47.8
CDE05G1980 Ceratophyllum demersum HOM05D006375 ORTHO05D008188 4.3e-210 735.7 874 49.2
Os08g0427500 Oryza sativa ssp. japonica HOM05D006375 ORTHO05D008188 1.3e-206 724.2 813 50.7
Zm00001eb041880 Zea mays HOM05D006375 ORTHO05D008188 4.2e-205 719.2 838 49.9
HPP92_024778 Vanilla planifolia HOM05D006375 ORTHO05D008188 9.4e-197 691.4 1003 45.3
unitig_899.g14571 Utricularia gibba HOM05D006375 ORTHO05D008188 4.7e-188 662.5 848 48.2
Phvul.010G024866 Phaseolus vulgaris HOM05D006375 ORTHO05D008188 5.0e-182 642.5 692 54.0
SEGI_37856 Sequoiadendron giganteum HOM05D006375 ORTHO05D008188 4.7e-180 636.0 1001 40.9
MBI19_g34823_MAGBIO Magnolia biondii HOM05D006375 ORTHO05D008188 7.7e-175 618.6 612 55.4
Eucgr.F02852 Eucalyptus grandis HOM05D006375 ORTHO05D008188 2.2e-174 617.1 657 52.8
Dinv28205 Davidia involucrata HOM05D006375 ORTHO05D008188 4.0e-171 606.3 708 50.7
SHI25352 Sapria himalayana HOM05D006375 ORTHO05D008188 1.5e-165 587.8 682 51.9
SMO139G0070 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 1.6e-156 557.8 900 40.3
Pp3c22_7360 Physcomitrium patens HOM05D006375 ORTHO05D008188 1.0e-155 555.1 1052 37.8
SMO157G0011 Selaginella moellendorffii HOM05D006375 ORTHO05D008188 3.2e-152 543.5 917 39.1
AagrBONN_evm.TU.Sc2ySwM_340.97 Anthoceros agrestis HOM05D006375 ORTHO05D008188 3.4e-138 496.9 871 38.2
Mapoly0069s0010 Marchantia polymorpha HOM05D006375 ORTHO05D008188 1.1e-136 491.9 1146 34.3
Peaxi162Scf00305g00615 Petunia axillaris HOM05D006375 ORTHO05D008188 1.2e-119 435.3 285 80.7
FAN26G3226 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.2e-113 414.5 476 48.1
CBR_g3816 Chara braunii HOM05D006375 ORTHO05D008188 1.1e-104 385.6 1125 30.2
Ca_22495_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 1.0e-89 335.9 369 50.7
CAN.G222.26 Capsicum annuum HOM05D006375 ORTHO05D008188 1.5e-82 312.0 208 83.7
Ca_22493_v3 Cicer arietinum L. HOM05D006375 ORTHO05D008188 4.1e-67 260.8 893 27.2
MCO12G035 Micromonas commoda HOM05D006375 ORTHO05D008188 6.5e-49 200.3 375 33.9
Haze_27154 Corylus avellana HOM05D006375 ORTHO05D008188 8.9e-46 189.9 363 34.4
PRCOL_00001710 Prasinoderma coloniale HOM05D006375 ORTHO05D008188 2.6e-45 188.3 860 23.1
Cfa025272 Carpinus fangiana HOM05D006375 ORTHO05D008188 1.9e-32 145.6 394 29.2
Nn2g13217 Nelumbo nucifera HOM05D006375 ORTHO05D008188 1.8e-30 139.0 135 53.3
Cre12.g557400 Chlamydomonas reinhardtii HOM05D006375 ORTHO05D008188 4.1e-27 127.9 311 29.9
Cfa024716 Carpinus fangiana HOM05D006375 ORTHO05D008188 2.2e-20 105.5 489 23.5
FAN26G2035 Fragaria x ananassa HOM05D006375 ORTHO05D008188 2.3e-17 95.5 188 35.1
SHI25356 Sapria himalayana HOM05D006375 ORTHO05D008188 2.8e-15 88.6 87 54.0
COL.COLO4_05996 Corchorus olitorius HOM05D006375 ORTHO05D000012 7.6e-13 80.5 108 44.4
SHI25355 Sapria himalayana HOM05D006375 ORTHO05D000014 6.9e-06 57.4 110 32.7


User provided reference genes

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