Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc10g049550.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.1e-72 273.9 141 100.0
Solyc10g049510.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-58 228.4 141 83.7
Sopen10g024920 Solanum pennellii HOM05D001514 ORTHO05D005209 2.7e-55 218.8 138 80.4
PGSC0003DMG400027872 Solanum tuberosum HOM05D001514 ORTHO05D005209 3.5e-55 218.4 140 78.6
Solyc10g055070.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.3e-54 216.5 138 79.0
Solyc10g054950.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.9e-53 212.6 138 77.5
Solyc10g055150.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 9.6e-53 210.3 138 78.3
Solyc10g054980.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.6e-52 208.4 136 78.7
Sopen10g024960 Solanum pennellii HOM05D001514 ORTHO05D005209 5.3e-51 204.5 123 82.1
PGSC0003DMG400003348 Solanum tuberosum HOM05D001514 ORTHO05D005209 1.7e-49 199.5 125 80.0
Solyc12g009090.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 7.1e-48 194.1 140 68.6
Sopen12g004040 Solanum pennellii HOM05D001514 ORTHO05D005209 7.1e-48 194.1 140 68.6
PGSC0003DMG400000323 Solanum tuberosum HOM05D001514 ORTHO05D005209 7.1e-48 194.1 140 68.6
Solyc10g055100.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.0e-46 190.3 138 73.2
Solyc10g055130.2 Solanum lycopersicum HOM05D001514 ORTHO05D005209 8.7e-46 187.2 118 77.1
Nitab4.5_0000073g0250 Nicotiana tabacum HOM05D001514 ORTHO05D005209 6.2e-44 181.0 135 66.7
Nitab4.5_0011363g0010 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.1e-43 180.3 135 66.7
Cc06_g12020 Coffea canephora HOM05D001514 ORTHO05D005209 1.4e-43 179.9 135 65.2
Peaxi162Scf00928g00034 Petunia axillaris HOM05D001514 ORTHO05D005209 1.8e-43 179.5 135 65.9
CAN.G1963.7 Capsicum annuum HOM05D001514 ORTHO05D005209 4.0e-43 178.3 138 64.5
Solyc10g055020.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 4.0e-43 178.3 126 72.2
Solyc05g041170.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.4e-42 175.3 140 60.7
SalBow6G1458 Salvia bowleyana HOM05D001514 ORTHO05D005209 5.8e-42 174.5 134 64.2
MSTRG.6002 Avicennia marina HOM05D001514 ORTHO05D005209 1.0e-41 173.7 134 62.7
SalBow3G1655 Salvia bowleyana HOM05D001514 ORTHO05D005209 1.3e-41 173.3 134 63.4
SGA_v2.0_scaffold97G29140 Striga asiatica HOM05D001514 ORTHO05D005209 1.7e-41 172.9 134 63.4
CSS0005970 Camellia sinensis var. sinensis HOM05D001514 ORTHO05D005209 1.1e-40 170.2 134 60.4
Solyc10g055160.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.4e-40 169.9 108 80.6
CAN.G299.3 Capsicum annuum HOM05D001514 ORTHO05D005209 1.9e-40 169.5 121 67.8
Nitab4.5_0001866g0080 Nicotiana tabacum HOM05D001514 ORTHO05D005209 1.9e-40 169.5 135 65.2
Lsat_1_v5_gn_7_35041 Lactuca sativa HOM05D001514 ORTHO05D005209 2.5e-40 169.1 134 61.9
Migut.J00937 Erythranthe guttata HOM05D001514 ORTHO05D005209 7.1e-40 167.5 135 60.0
ECA233G5402 Erigeron canadensis HOM05D001514 ORTHO05D005209 1.6e-39 166.4 135 61.5
Hma1.2p1_0928F.1_g237710 Hydrangea macrophylla HOM05D001514 ORTHO05D005209 6.0e-39 164.5 135 58.5
Sopen10g024890 Solanum pennellii HOM05D001514 ORTHO05D005209 6.0e-39 164.5 101 81.2
Dinv42376 Davidia involucrata HOM05D001514 ORTHO05D005209 1.8e-38 162.9 134 57.5
HanXRQChr09g0237811 Helianthus annuus HOM05D001514 ORTHO05D005209 3.9e-38 161.8 133 58.6
Ciclev10012695m.g Citrus clementina HOM05D001514 ORTHO05D005209 5.1e-38 161.4 134 57.5
Eucgr.C00825 Eucalyptus grandis HOM05D001514 ORTHO05D005209 8.7e-38 160.6 133 57.9
Prupe.7G201200 Prunus persica HOM05D001514 ORTHO05D005209 8.7e-38 160.6 134 54.5
CAN.G1774.14 Capsicum annuum HOM05D001514 ORTHO05D005209 1.1e-37 160.2 140 59.3
CAN.G2532.1 Capsicum annuum HOM05D001514 ORTHO05D005209 2.5e-37 159.1 133 60.9
PGR142G1966 Punica granatum HOM05D001514 ORTHO05D005209 3.3e-37 158.7 133 58.6
Haze_10270 Corylus avellana HOM05D001514 ORTHO05D005209 5.7e-37 157.9 134 54.5
MD15G1215700 Malus domestica HOM05D001514 ORTHO05D005209 7.4e-37 157.5 128 57.8
MD15G1215800 Malus domestica HOM05D001514 ORTHO05D005209 7.4e-37 157.5 134 55.2
EL10Ac8g19111 Beta vulgaris HOM05D001514 ORTHO05D005209 1.3e-36 156.8 135 55.6
CsaV3_2G001190 Cucumis sativus L. HOM05D001514 ORTHO05D005209 1.3e-36 156.8 134 54.5
Nn8g38685 Nelumbo nucifera HOM05D001514 ORTHO05D005209 1.3e-36 156.8 128 57.0
Sed0009954 Sechium edule HOM05D001514 ORTHO05D005209 1.3e-36 156.8 134 55.2
QL11p000460 Quercus lobata HOM05D001514 ORTHO05D005209 1.6e-36 156.4 134 55.2
Thecc.09G079100 Theobroma cacao HOM05D001514 ORTHO05D005209 1.6e-36 156.4 133 54.9
TWI60G0494 Tripterygium wilfordii HOM05D001514 ORTHO05D005209 1.6e-36 156.4 133 56.4
TAR626G0523 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.6e-36 156.4 131 56.5
TAR626G1304 Trochodendron aralioides HOM05D001514 ORTHO05D005209 1.6e-36 156.4 131 56.5
TAR383G0900 Trochodendron aralioides HOM05D001514 ORTHO05D005209 2.8e-36 155.6 128 56.2
MBI13_g11335_MAGBIO Magnolia biondii HOM05D001514 ORTHO05D005209 3.7e-36 155.2 131 55.0
Potri.006G143400 Populus trichocarpa HOM05D001514 ORTHO05D005209 3.7e-36 155.2 131 53.4
CiPaw.03G207800 Carya illinoinensis HOM05D001514 ORTHO05D005209 4.8e-36 154.8 134 53.7
Rhsim03G0229200 Rhododendron simsii HOM05D001514 ORTHO05D005209 4.8e-36 154.8 135 53.3
Cpa.g.sc280.6 Carica papaya HOM05D001514 ORTHO05D005209 6.3e-36 154.5 135 56.3
Sc08g0008840 Simmondsia chinensis HOM05D001514 ORTHO05D005209 8.2e-36 154.1 135 54.1
Sc08g0009330 Simmondsia chinensis HOM05D001514 ORTHO05D005209 8.2e-36 154.1 135 54.1
Manes.03G199800 Manihot esculenta HOM05D001514 ORTHO05D005209 1.4e-35 153.3 131 55.7
Sabra06G0112300 Salix brachista HOM05D001514 ORTHO05D005209 1.4e-35 153.3 131 52.7
Sabra06G0113700 Salix brachista HOM05D001514 ORTHO05D005209 1.4e-35 153.3 131 52.7
Hund08725 Selenicereus undatus HOM05D001514 ORTHO05D005209 1.4e-35 153.3 135 53.3
unitig_749.g14240 Utricularia gibba HOM05D001514 ORTHO05D005209 1.8e-35 152.9 135 57.8
GSVIVG01015097001 Vitis vinifera HOM05D001514 ORTHO05D005209 1.8e-35 152.9 135 53.3
Gohir.A13G191300 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.1e-35 152.1 133 53.4
Atru.chr7.1692 Acer truncatum HOM05D001514 ORTHO05D005209 5.3e-35 151.4 135 55.6
Gorai.013G225400 Gossypium raimondii HOM05D001514 ORTHO05D005209 6.9e-35 151.0 133 52.6
COL.COLO4_18112 Corchorus olitorius HOM05D001514 ORTHO05D005209 9.0e-35 150.6 133 53.4
RcHm_v2.0_Chr2g0094521 Rosa chinensis HOM05D001514 ORTHO05D005209 9.0e-35 150.6 132 54.5
ClCG11G001470 Citrullus lanatus HOM05D001514 ORTHO05D005209 1.2e-34 150.2 152 49.3
ATR0598G338 Amborella trichopoda HOM05D001514 ORTHO05D005209 1.5e-34 149.8 128 54.7
AUR62025186 Chenopodium quinoa HOM05D001514 ORTHO05D005209 1.5e-34 149.8 135 51.1
FvH4_1g08420 Fragaria vesca HOM05D001514 ORTHO05D005209 1.5e-34 149.8 134 51.5
FAN26G1993 Fragaria x ananassa HOM05D001514 ORTHO05D005209 1.5e-34 149.8 134 51.5
AUR62028988 Chenopodium quinoa HOM05D001514 ORTHO05D005209 2.0e-34 149.4 135 51.1
Duzib168G1760 Durio zibethinus HOM05D001514 ORTHO05D005209 3.4e-34 148.7 133 52.6
Gohir.D13G196700 Gossypium hirsutum HOM05D001514 ORTHO05D005209 3.4e-34 148.7 133 51.9
HPP92_009229 Vanilla planifolia HOM05D001514 ORTHO05D005209 5.9e-34 147.9 127 54.3
AL4G21890 Arabidopsis lyrata HOM05D001514 ORTHO05D005209 1.3e-33 146.7 134 53.0
Carub.0004s0911 Capsella rubella HOM05D001514 ORTHO05D005209 1.7e-33 146.4 134 53.7
Sp4g11040 Schrenkiella parvula HOM05D001514 ORTHO05D005209 2.9e-33 145.6 134 54.5
Lj7A685T53 Lonicera japonica HOM05D001514 ORTHO05D005209 5.0e-33 144.8 177 45.2
Lj4g0013364 Lotus japonicus HOM05D001514 ORTHO05D005209 5.0e-33 144.8 132 55.3
CANSAT11G2059 Cannabis sativa HOM05D001514 ORTHO05D005209 6.5e-33 144.4 134 50.7
Thhalv10002659m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 6.5e-33 144.4 134 53.7
MELO3C004649.2 Cucumis melo HOM05D001514 ORTHO05D005209 8.5e-33 144.1 134 52.2
AT2G28230 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 1.1e-32 143.7 134 53.0
THA.LOC104808891 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.9e-32 142.9 133 53.4
Glyma.13G109300 Glycine max HOM05D001514 ORTHO05D005209 3.2e-32 142.1 133 52.6
Actinidia38471 Actinidia chinensis HOM05D001514 ORTHO05D005209 4.2e-32 141.7 134 52.2
Carub.0004s0910 Capsella rubella HOM05D001514 ORTHO05D005209 5.5e-32 141.4 135 51.9
Glyma.17G050300 Glycine max HOM05D001514 ORTHO05D005209 5.5e-32 141.4 133 52.6
Zm00001eb314270 Zea mays HOM05D001514 ORTHO05D005209 5.5e-32 141.4 128 50.0
Os09g0443500 Oryza sativa ssp. japonica HOM05D001514 ORTHO05D005209 7.2e-32 141.0 127 50.4
Phvul.003G131900 Phaseolus vulgaris HOM05D001514 ORTHO05D005209 9.3e-32 140.6 132 53.8
Psat4g016720 Pisum sativum HOM05D001514 ORTHO05D005209 1.2e-31 140.2 133 52.6
Aa31sc437G10 Aethionema arabicum HOM05D001514 ORTHO05D005209 1.6e-31 139.8 134 50.7
A07p18760 Brassica napus HOM05D001514 ORTHO05D005209 1.6e-31 139.8 133 52.6
BraA07t29585Z Brassica rapa HOM05D001514 ORTHO05D005209 1.6e-31 139.8 133 52.6
PGSC0003DMG400024425 Solanum tuberosum HOM05D001514 ORTHO05D005209 2.1e-31 139.4 97 74.2
Haze_25985 Corylus avellana HOM05D001514 ORTHO05D005209 2.7e-31 139.0 171 42.7
Haze_25993 Corylus avellana HOM05D001514 ORTHO05D005209 2.7e-31 139.0 171 42.7
AT4G09070 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 3.6e-31 138.7 134 50.0
BcaB02g10157 Brassica carinata HOM05D001514 ORTHO05D005209 3.6e-31 138.7 133 51.9
PSO210G4222 Papaver somniferum HOM05D001514 ORTHO05D005209 4.6e-31 138.3 131 49.6
FAN26G0729 Fragaria x ananassa HOM05D001514 ORTHO05D005209 6.1e-31 137.9 154 44.8
CDE05G2440 Ceratophyllum demersum HOM05D001514 ORTHO05D005209 7.9e-31 137.5 134 47.8
BcaC02g10956 Brassica carinata HOM05D001514 ORTHO05D005209 1.3e-30 136.7 133 50.4
C04p23290 Brassica napus HOM05D001514 ORTHO05D005209 1.3e-30 136.7 133 50.4
BolC4t23831H Brassica oleracea HOM05D001514 ORTHO05D005209 1.8e-30 136.3 133 50.4
arahy.Tifrunner.gnm1.ann1.0DN5L0 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.0e-30 135.6 132 50.8
arahy.Tifrunner.gnm1.ann1.0TW07M Arachis hypogaea HOM05D001514 ORTHO05D005209 3.0e-30 135.6 132 50.8
arahy.Tifrunner.gnm1.ann1.I7BKR8 Arachis hypogaea HOM05D001514 ORTHO05D005209 3.0e-30 135.6 132 50.8
Medtr2g063927 Medicago truncatula HOM05D001514 ORTHO05D005209 3.0e-30 135.6 132 51.5
TPR.G9427 Trifolium pratense HOM05D001514 ORTHO05D005209 3.0e-30 135.6 133 51.9
PSO386G0176 Papaver somniferum HOM05D001514 ORTHO05D005209 5.1e-30 134.8 131 48.1
Sopen10g024880 Solanum pennellii HOM05D000004 ORTHO05D000002 5.1e-30 134.8 91 76.9
Aqoxy7G01057 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 6.7e-30 134.4 134 45.5
Aqoxy7G01056 Aquilegia oxysepala HOM05D001514 ORTHO05D005209 8.7e-30 134.0 134 44.8
Medtr4g125510 Medicago truncatula HOM05D001514 ORTHO05D005209 8.7e-30 134.0 132 53.0
THA.LOC104826585 Tarenaya hassleriana HOM05D001514 ORTHO05D005209 1.9e-29 132.9 156 46.2
vmacro06328 Vaccinium macrocarpon HOM05D001514 ORTHO05D005209 2.5e-29 132.5 163 44.2
Ca_21314_v3 Cicer arietinum L. HOM05D001514 ORTHO05D005209 2.2e-28 129.4 132 48.5
VMungo1215G3125 Vigna mungo HOM05D001514 ORTHO05D005209 3.7e-28 128.6 120 52.5
Lalb_Chr07g0181101 Lupinus albus HOM05D001514 ORTHO05D005209 1.2e-26 123.6 133 45.9
Manes.15G009400 Manihot esculenta HOM05D001514 ORTHO05D005209 3.4e-26 122.1 117 52.1
CARHR121150 Cardamine hirsuta HOM05D001514 ORTHO05D005209 4.5e-26 121.7 109 55.0
PGSC0003DMG400040125 Solanum tuberosum HOM05D001514 ORTHO05D005209 5.9e-26 121.3 140 54.3
Thhalv10017586m.g Eutrema salsugineum HOM05D001514 ORTHO05D005209 6.5e-25 117.9 134 47.0
MD02G1088400 Malus domestica HOM05D001514 ORTHO05D005209 1.1e-24 117.1 104 50.0
Carub.0006s2765 Capsella rubella HOM05D001514 ORTHO05D005209 1.4e-24 116.7 128 43.8
Sopen12g011120 Solanum pennellii HOM05D001514 ORTHO05D005209 1.9e-24 116.3 75 74.7
SMO141G0192 Selaginella moellendorffii HOM05D001514 ORTHO05D005209 5.5e-24 114.8 136 41.9
Mapoly0097s0017 Marchantia polymorpha HOM05D001514 ORTHO05D005209 9.4e-24 114.0 125 40.8
Pp3c7_2780 Physcomitrium patens HOM05D001514 ORTHO05D005209 1.5e-21 106.7 130 40.0
Psat0s2317g0240 Pisum sativum HOM05D001514 ORTHO05D005209 1.7e-20 103.2 126 40.5
Actinidia29922 Actinidia chinensis HOM05D001514 ORTHO05D005209 3.7e-20 102.1 98 51.0
Psat0s4474g0080 Pisum sativum HOM05D001514 ORTHO05D005209 1.1e-19 100.5 133 37.6
AagrBONN_evm.TU.Sc2ySwM_344.5098 Anthoceros agrestis HOM05D001514 ORTHO05D005209 2.4e-19 99.4 135 36.3
Solyc12g062270.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 5.3e-19 98.2 111 53.2
CBR_g11153 Chara braunii HOM05D001514 ORTHO05D005209 1.2e-18 97.1 119 38.7
Solyc10g055010.3 Solanum lycopersicum HOM05D001514 ORTHO05D005209 1.2e-18 97.1 66 74.2
DCAR_024738 Daucus carota HOM05D001514 ORTHO05D005209 5.9e-18 94.7 74 59.5
Nitab4.5_0000073g0220 Nicotiana tabacum HOM05D001514 ORTHO05D005209 2.6e-13 79.3 59 67.8
DCAR_026438 Daucus carota HOM05D001514 ORTHO05D005209 2.8e-12 75.9 60 58.3
DCAR_024739 Daucus carota HOM05D001514 ORTHO05D005209 4.8e-12 75.1 59 57.6
Potri.005G126902 Populus trichocarpa HOM05D001514 ORTHO05D005209 5.9e-10 68.2 73 43.8
AT2G28020 Arabidopsis thaliana HOM05D001514 ORTHO05D005209 5.0e-09 65.1 61 50.8
Solyc10g055030.1 Solanum lycopersicum HOM05D001514 ORTHO05D005209 3.2e-08 62.4 61 55.7


User provided reference genes

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