Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g018690.4 Solanum lycopersicum HOM05D000246 ORTHO05D009140 0.0e+00 1076.2 540 100.0
Sopen09g012230 Solanum pennellii HOM05D000246 ORTHO05D009140 3.0e-288 994.6 522 96.7
CAN.G478.17 Capsicum annuum HOM05D000246 ORTHO05D009140 1.2e-263 912.9 526 88.2
Nitab4.5_0000539g0090 Nicotiana tabacum HOM05D000246 ORTHO05D009140 2.9e-251 871.7 525 85.9
Peaxi162Scf00293g00723 Petunia axillaris HOM05D000246 ORTHO05D009140 5.6e-226 787.7 541 75.4
Nitab4.5_0002399g0090 Nicotiana tabacum HOM05D000246 ORTHO05D009140 1.4e-176 623.6 436 76.1
Oeu020449.1 Olea europaea HOM05D000246 ORTHO05D009140 3.3e-162 575.9 530 56.2
Migut.D00789 Erythranthe guttata HOM05D000246 ORTHO05D009140 6.7e-155 551.6 523 54.9
FAN11G0500 Fragaria x ananassa HOM05D000246 ORTHO05D009140 1.4e-152 543.9 526 55.3
FAN16G3185 Fragaria x ananassa HOM05D000246 ORTHO05D009140 1.4e-152 543.9 526 55.3
Prupe.6G037500 Prunus persica HOM05D000246 ORTHO05D009140 2.4e-152 543.1 525 55.0
QL01p023430 Quercus lobata HOM05D000246 ORTHO05D009140 2.4e-152 543.1 536 54.1
Cc01_g15610 Coffea canephora HOM05D000246 ORTHO05D009140 5.3e-152 542.0 524 53.4
Lj1A109T41 Lonicera japonica HOM05D000246 ORTHO05D009140 1.6e-151 540.4 527 54.3
Rhsim13G0056800 Rhododendron simsii HOM05D000246 ORTHO05D009140 4.5e-151 538.9 532 55.3
CSS0047282 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D009140 7.7e-151 538.1 528 54.4
SGA_v2.0_scaffold158G37464 Striga asiatica HOM05D000246 ORTHO05D009140 7.7e-151 538.1 521 53.7
CiPaw.13G059300 Carya illinoinensis HOM05D000246 ORTHO05D009140 1.5e-149 533.9 542 53.0
MD03G1046200 Malus domestica HOM05D000246 ORTHO05D009140 9.4e-149 531.2 525 53.7
TAR633G0607 Trochodendron aralioides HOM05D000246 ORTHO05D009140 9.4e-149 531.2 532 54.5
Atru.chr10.2369 Acer truncatum HOM05D000246 ORTHO05D009140 4.7e-148 528.9 538 53.2
RcHm_v2.0_Chr5g0074061 Rosa chinensis HOM05D000246 ORTHO05D009140 5.2e-147 525.4 526 53.8
CANSAT54G0602 Cannabis sativa HOM05D000246 ORTHO05D009140 4.8e-145 518.8 530 52.8
TWI74G1630 Tripterygium wilfordii HOM05D000246 ORTHO05D009140 2.4e-144 516.5 542 51.3
Duzib168G1839 Durio zibethinus HOM05D000246 ORTHO05D009140 1.0e-142 511.1 532 51.5
Phvul.006G082600 Phaseolus vulgaris HOM05D000246 ORTHO05D009140 1.0e-142 511.1 529 52.7
Potri.013G161200 Populus trichocarpa HOM05D000246 ORTHO05D009140 1.3e-142 510.8 524 51.3
vmacro02858 Vaccinium macrocarpon HOM05D000246 ORTHO05D009140 5.0e-142 508.8 566 50.9
MSTRG.18522 Avicennia marina HOM05D000246 ORTHO05D009140 8.5e-142 508.1 488 55.9
Glyma.18G048900 Glycine max HOM05D000246 ORTHO05D009140 4.2e-141 505.8 536 53.0
Lj6g0007866 Lotus japonicus HOM05D000246 ORTHO05D009140 9.4e-141 504.6 543 52.5
Medtr3g063040 Medicago truncatula HOM05D000246 ORTHO05D009140 8.0e-140 501.5 529 50.7
arahy.Tifrunner.gnm1.ann1.32IKG8 Arachis hypogaea HOM05D000246 ORTHO05D009140 6.8e-139 498.4 527 51.4
Lalb_Chr15g0085521 Lupinus albus HOM05D000246 ORTHO05D009140 8.8e-139 498.0 524 52.9
Manes.18G122300 Manihot esculenta HOM05D000246 ORTHO05D009140 2.0e-138 496.9 529 50.9
Haze_24501 Corylus avellana HOM05D000246 ORTHO05D009140 2.8e-137 493.0 515 53.0
FvH4_3g41250 Fragaria vesca HOM05D000246 ORTHO05D009140 7.0e-136 488.4 486 54.5
DCAR_004785 Daucus carota HOM05D000246 ORTHO05D009140 2.0e-135 486.9 530 49.6
MELO3C008833.2 Cucumis melo HOM05D000246 ORTHO05D009140 2.7e-135 486.5 532 49.4
HanXRQChr01g0013541 Helianthus annuus HOM05D000246 ORTHO05D009140 7.7e-135 485.0 527 51.2
Sed0012503 Sechium edule HOM05D000246 ORTHO05D009140 1.0e-134 484.6 528 50.0
Sc12g0000050 Simmondsia chinensis HOM05D000246 ORTHO05D009140 2.3e-134 483.4 535 49.7
Ca_15092_v3 Cicer arietinum L. HOM05D000246 ORTHO05D009140 1.5e-133 480.7 540 49.1
CsaV3_4G012090 Cucumis sativus L. HOM05D000246 ORTHO05D009140 1.2e-132 477.6 530 49.6
Psat5g146240 Pisum sativum HOM05D000246 ORTHO05D009140 6.1e-132 475.3 518 50.2
AUR62037584 Chenopodium quinoa HOM05D000246 ORTHO05D009140 8.0e-132 474.9 520 51.0
EL10Ac4g08390 Beta vulgaris HOM05D000246 ORTHO05D009140 1.4e-131 474.2 536 49.8
Aqoxy5G02490 Aquilegia oxysepala HOM05D000246 ORTHO05D009140 1.8e-131 473.8 539 49.5
arahy.Tifrunner.gnm1.ann1.KDY275 Arachis hypogaea HOM05D000246 ORTHO05D009140 2.3e-131 473.4 512 51.4
Actinidia11642 Actinidia chinensis HOM05D000246 ORTHO05D009140 9.8e-130 468.0 371 62.5
Hund18366 Selenicereus undatus HOM05D000246 ORTHO05D009140 3.7e-129 466.1 524 49.2
ATR1127G158 Amborella trichopoda HOM05D000246 ORTHO05D009140 1.9e-125 453.8 530 48.5
ECA248G0782 Erigeron canadensis HOM05D000246 ORTHO05D009140 2.1e-124 450.3 515 49.1
Sabra13G0128900 Salix brachista HOM05D000246 ORTHO05D009140 2.9e-121 439.9 500 49.0
PGSC0003DMG402025422 Solanum tuberosum HOM05D000246 ORTHO05D009140 1.4e-120 437.6 260 90.0
Lsat_1_v5_gn_5_176881 Lactuca sativa HOM05D000246 ORTHO05D009140 3.2e-120 436.4 508 49.2
TPR.G37358 Trifolium pratense HOM05D000246 ORTHO05D009140 2.3e-118 430.3 474 50.8
Glyma.11G201900 Glycine max HOM05D000246 ORTHO05D009140 1.9e-117 427.2 356 61.0
VMungo0540G2472 Vigna mungo HOM05D000246 ORTHO05D009140 1.6e-116 424.1 356 59.3
MBI15_g11744_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D009140 2.8e-116 423.3 491 49.7
MELO3C008825.2 Cucumis melo HOM05D000246 ORTHO05D009140 3.5e-111 406.4 386 53.6
GSVIVG01024519001 Vitis vinifera HOM05D000246 ORTHO05D009140 4.3e-109 399.4 441 49.9
Ah.04g164140 Amaranthus hybridus HOM05D000246 ORTHO05D009140 2.1e-108 397.1 549 43.5
HPP92_014358 Vanilla planifolia HOM05D000246 ORTHO05D009140 8.1e-108 395.2 523 43.4
ClCG04G005480 Citrullus lanatus HOM05D000246 ORTHO05D009140 1.5e-106 391.0 564 43.3
Os07g0681600 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D009140 3.2e-104 383.3 525 42.3
CsaV3_4G012100 Cucumis sativus L. HOM05D000246 ORTHO05D009140 3.0e-102 376.7 384 49.2
Zm00001eb330800 Zea mays HOM05D000246 ORTHO05D009140 6.6e-102 375.6 558 41.8
SEGI_37344 Sequoiadendron giganteum HOM05D000246 ORTHO05D009140 2.1e-92 344.0 493 42.4
Ciclev10001421m.g Citrus clementina HOM05D000246 ORTHO05D009140 2.7e-87 327.0 397 47.4
Dinv17919 Davidia involucrata HOM05D000246 ORTHO05D009140 4.9e-81 306.2 209 69.9
SMO367G0949 Selaginella moellendorffii HOM05D000246 ORTHO05D009140 8.4e-81 305.4 517 36.9
AagrBONN_evm.TU.Sc2ySwM_228.2819 Anthoceros agrestis HOM05D000246 ORTHO05D009140 3.0e-78 297.0 538 35.1
Pp3c12_1610 Physcomitrium patens HOM05D000246 ORTHO05D009140 1.3e-76 291.6 547 36.7
SGA_v2.0_scaffold158G37461 Striga asiatica HOM05D000246 ORTHO05D009140 7.6e-74 282.3 247 57.9
Mapoly0130s0046 Marchantia polymorpha HOM05D000246 ORTHO05D009140 3.9e-70 270.0 381 40.2
FvH4_4g07250 Fragaria vesca HOM05D002724 ORTHO05D002995 9.0e-59 232.3 231 55.0
TPR.G37336 Trifolium pratense HOM05D000246 ORTHO05D009140 6.7e-54 216.1 321 43.3
Actinidia23144 Actinidia chinensis HOM05D000246 ORTHO05D009140 4.1e-51 206.8 165 62.4
MD11G1048600 Malus domestica HOM05D000246 ORTHO05D009140 7.2e-48 196.1 151 62.9
CBR_g39230 Chara braunii HOM05D000246 ORTHO05D009140 3.1e-43 180.6 401 29.9
RcHm_v2.0_Chr5g0074051 Rosa chinensis HOM05D000246 ORTHO05D009140 1.2e-42 178.7 131 66.4
CsaV3_4G012080 Cucumis sativus L. HOM05D000246 ORTHO05D009140 2.2e-41 174.5 145 56.6
MELO3C008835.2 Cucumis melo HOM05D000246 ORTHO05D009140 4.2e-40 170.2 125 60.8
MD11G1048500 Malus domestica HOM05D000246 ORTHO05D009140 2.6e-37 161.0 189 47.6
VMungo0540G0783 Vigna mungo HOM05D000246 ORTHO05D009140 1.2e-31 142.1 220 40.9
Zm00001eb239640 Zea mays HOM05D000246 ORTHO05D009140 2.7e-31 141.0 96 62.5
FAN12G4280 Fragaria x ananassa HOM05D000289 ORTHO05D209272 2.2e-28 131.3 145 53.8
Cre12.g490150 Chlamydomonas reinhardtii HOM05D000246 ORTHO05D009140 1.8e-19 101.7 395 25.6
Atru.chr10.2371 Acer truncatum HOM05D000246 ORTHO05D009140 3.3e-16 90.9 193 35.2
PRCOL_00005634 Prasinoderma coloniale HOM05D000246 ORTHO05D009140 2.3e-14 84.7 265 26.4
TPR.G37424 Trifolium pratense HOM05D000246 ORTHO05D009140 5.7e-13 80.1 46 73.9
BcaNung06376 Brassica carinata HOM05D000246 ORTHO05D005396 2.4e-11 74.7 243 26.7
Carub.0002s0433 Capsella rubella HOM05D000246 ORTHO05D005396 2.4e-11 74.7 242 25.2
Lsat_1_v5_gn_5_105701 Lactuca sativa HOM05D000246 ORTHO05D005396 5.4e-11 73.6 263 26.2
Lalb_Chr20g0123591 Lupinus albus HOM05D000246 ORTHO05D005396 9.2e-11 72.8 247 26.7
Ciclev10001180m.g Citrus clementina HOM05D000246 ORTHO05D009140 2.0e-10 71.6 46 63.0
THA.LOC104809610 Tarenaya hassleriana HOM05D000246 ORTHO05D005396 2.0e-10 71.6 241 26.1
BolC8t52382H Brassica oleracea HOM05D000246 ORTHO05D005396 2.7e-10 71.2 243 25.9
MELO3C019447.2 Cucumis melo HOM05D000246 ORTHO05D005396 2.7e-10 71.2 240 27.1
Sc10g0005930 Simmondsia chinensis HOM05D000246 ORTHO05D005396 2.7e-10 71.2 244 29.1
C08p48440 Brassica napus HOM05D000246 ORTHO05D005396 3.5e-10 70.9 243 26.3
A09p64760 Brassica napus HOM05D000246 ORTHO05D005396 5.9e-10 70.1 243 26.3
Gohir.D13G034100 Gossypium hirsutum HOM05D000246 ORTHO05D005396 5.9e-10 70.1 252 25.8
BraA09t41819Z Brassica rapa HOM05D000246 ORTHO05D005396 7.8e-10 69.7 243 26.3
Sed0017184 Sechium edule HOM05D000246 ORTHO05D005396 7.8e-10 69.7 238 25.2
Solyc01g103960.3 Solanum lycopersicum HOM05D000246 ORTHO05D005396 7.8e-10 69.7 242 28.5
Sopen01g046350 Solanum pennellii HOM05D000246 ORTHO05D005396 7.8e-10 69.7 242 28.5
BcaC07g38630 Brassica carinata HOM05D000246 ORTHO05D005396 1.0e-09 69.3 239 26.4
Glyma.08G188100 Glycine max HOM05D000246 ORTHO05D005396 1.0e-09 69.3 279 25.8
Gorai.013G038600 Gossypium raimondii HOM05D000246 ORTHO05D005396 1.0e-09 69.3 252 26.2
Psat1g222120 Pisum sativum HOM05D000246 ORTHO05D005396 1.0e-09 69.3 254 26.4
COL.COLO4_11771 Corchorus olitorius HOM05D000246 ORTHO05D005396 1.7e-09 68.6 244 27.5
Ca_00062_v3 Cicer arietinum L. HOM05D000246 ORTHO05D005396 2.9e-09 67.8 260 25.8
Lj6g0022943 Lotus japonicus HOM05D000246 ORTHO05D005396 2.9e-09 67.8 242 26.9
CsaV3_3G019190 Cucumis sativus L. HOM05D000246 ORTHO05D005396 3.9e-09 67.4 240 25.0
Rhsim11G0127500 Rhododendron simsii HOM05D000246 ORTHO05D005396 3.9e-09 67.4 242 25.2
TPR.G2105 Trifolium pratense HOM05D000246 ORTHO05D005396 3.9e-09 67.4 253 25.7
Migut.B00814 Erythranthe guttata HOM05D000246 ORTHO05D005396 5.0e-09 67.0 247 27.5
Eucgr.G00562 Eucalyptus grandis HOM05D000246 ORTHO05D005396 5.0e-09 67.0 240 26.2
CSS0032566 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 6.6e-09 66.6 239 28.0
CSS0044641 Camellia sinensis var. sinensis HOM05D000246 ORTHO05D005396 6.6e-09 66.6 239 28.0
A08p33740 Brassica napus HOM05D000246 ORTHO05D005396 8.6e-09 66.2 240 25.4
C08p14030 Brassica napus HOM05D000246 ORTHO05D005396 8.6e-09 66.2 240 25.4
BolC8t49040H Brassica oleracea HOM05D000246 ORTHO05D005396 8.6e-09 66.2 240 25.4
Zm00001eb231860 Zea mays HOM05D000246 ORTHO05D005396 8.6e-09 66.2 230 27.0
PGR042G0910 Punica granatum HOM05D000246 ORTHO05D005396 1.5e-08 65.5 249 24.9
TPR.G23583 Trifolium pratense HOM05D000246 ORTHO05D005396 1.5e-08 65.5 253 26.1
Sp1g09640 Schrenkiella parvula HOM05D000246 ORTHO05D005396 1.9e-08 65.1 239 26.4
MD02G1262900 Malus domestica HOM05D000246 ORTHO05D005396 2.5e-08 64.7 245 25.7
Medtr2g006440 Medicago truncatula HOM05D000246 ORTHO05D005396 3.3e-08 64.3 251 25.9
MBI17_g20812_MAGBIO Magnolia biondii HOM05D000246 ORTHO05D005396 4.3e-08 63.9 235 26.4
Haze_01763 Corylus avellana HOM05D000246 ORTHO05D005396 7.3e-08 63.2 243 28.0
BcaC07g38599 Brassica carinata HOM05D000246 ORTHO05D005396 9.5e-08 62.8 239 24.7
Carub.0001s1051 Capsella rubella HOM05D000246 ORTHO05D005396 9.5e-08 62.8 247 25.1
MD07G1057400 Malus domestica HOM05D000246 ORTHO05D005396 1.2e-07 62.4 239 25.1
CiPaw.05G049800 Carya illinoinensis HOM05D000246 ORTHO05D005396 1.6e-07 62.0 249 25.3
AT1G10930 Arabidopsis thaliana HOM05D000246 ORTHO05D005396 2.1e-07 61.6 242 25.6
QL02p099436 Quercus lobata HOM05D000246 ORTHO05D005396 2.1e-07 61.6 248 27.0
AL1G21910 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 2.8e-07 61.2 242 25.6
BraA08t35290Z Brassica rapa HOM05D000246 ORTHO05D005396 2.8e-07 61.2 253 25.3
Manes.10G122800 Manihot esculenta HOM05D000246 ORTHO05D005396 2.8e-07 61.2 238 23.9
Os04g0433800 Oryza sativa ssp. japonica HOM05D000246 ORTHO05D005396 2.8e-07 61.2 240 23.3
Phvul.006G216200 Phaseolus vulgaris HOM05D000246 ORTHO05D005396 2.8e-07 61.2 244 24.2
VMungo0540G2260 Vigna mungo HOM05D000246 ORTHO05D005396 2.8e-07 61.2 238 25.2
MSTRG.16508 Avicennia marina HOM05D000246 ORTHO05D005396 3.6e-07 60.8 239 25.1
CARHR011150 Cardamine hirsuta HOM05D000246 ORTHO05D005396 4.7e-07 60.5 245 24.5
Duzib132G0704 Durio zibethinus HOM05D000246 ORTHO05D005396 8.0e-07 59.7 239 25.1
SGA_v2.0_scaffold110G31337 Striga asiatica HOM05D000246 ORTHO05D005396 8.0e-07 59.7 270 24.1
BcaC05g24973 Brassica carinata HOM05D000246 ORTHO05D005396 1.0e-06 59.3 263 25.5
ECA234G4461 Erigeron canadensis HOM05D000246 ORTHO05D005396 1.8e-06 58.5 251 25.9
GSVIVG01023325001 Vitis vinifera HOM05D000246 ORTHO05D005396 1.8e-06 58.5 249 24.1
AL2G15560 Arabidopsis lyrata HOM05D000246 ORTHO05D005396 2.3e-06 58.2 233 25.3
CsaV3_4G012070 Cucumis sativus L. HOM05D000246 ORTHO05D172834 2.3e-06 58.2 75 45.3


User provided reference genes

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