Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g015500.1 Solanum lycopersicum HOM05D002634 ORTHO05D037727 8.5e-44 179.9 86 100.0
Sopen02g002170 Solanum pennellii HOM05D002634 ORTHO05D037727 2.8e-10 68.6 51 64.7
Manes.13G116500 Manihot esculenta HOM05D002634 ORTHO05D003100 2.0e-08 62.4 39 64.1
Potri.007G050100 Populus trichocarpa HOM05D002634 ORTHO05D003100 2.0e-08 62.4 38 65.8
PGR004G2669 Punica granatum HOM05D002634 ORTHO05D003100 2.0e-08 62.4 38 65.8
QL06p040017 Quercus lobata HOM05D002634 ORTHO05D003100 2.0e-08 62.4 38 65.8
Sabra07G0044500 Salix brachista HOM05D002634 ORTHO05D003100 2.0e-08 62.4 38 65.8
THA.LOC104821238 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 2.0e-08 62.4 38 65.8
TWI09G1405 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 2.0e-08 62.4 39 64.1
GSVIVG01000179001 Vitis vinifera HOM05D002634 ORTHO05D003100 2.0e-08 62.4 38 65.8
ClCG01G017150 Citrullus lanatus HOM05D002634 ORTHO05D003100 2.6e-08 62.0 38 63.2
MELO3C007593.2 Cucumis melo HOM05D002634 ORTHO05D003100 2.6e-08 62.0 38 63.2
CsaV3_6G043670 Cucumis sativus L. HOM05D002634 ORTHO05D003100 2.6e-08 62.0 38 63.2
Duzib147G0499 Durio zibethinus HOM05D002634 ORTHO05D003100 2.6e-08 62.0 43 60.5
Glyma.17G165900 Glycine max HOM05D002634 ORTHO05D003100 2.6e-08 62.0 38 63.2
Phvul.003G239000 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 2.6e-08 62.0 38 63.2
CAN.G1054.5 Capsicum annuum HOM05D002634 ORTHO05D003100 4.4e-08 61.2 39 66.7
Cfa004076 Carpinus fangiana HOM05D002634 ORTHO05D003100 4.4e-08 61.2 38 63.2
Ciclev10025285m.g Citrus clementina HOM05D002634 ORTHO05D003100 4.4e-08 61.2 38 63.2
Haze_15337 Corylus avellana HOM05D002634 ORTHO05D003100 4.4e-08 61.2 38 63.2
Gohir.A02G154600 Gossypium hirsutum HOM05D002634 ORTHO05D003100 4.4e-08 61.2 38 63.2
Nitab4.5_0000934g0230 Nicotiana tabacum HOM05D002634 ORTHO05D003100 4.4e-08 61.2 39 66.7
Nitab4.5_0003633g0010 Nicotiana tabacum HOM05D002634 ORTHO05D003100 4.4e-08 61.2 39 66.7
THA.LOC104819248 Tarenaya hassleriana HOM05D002634 ORTHO05D003100 4.4e-08 61.2 38 63.2
Thecc.01G065500 Theobroma cacao HOM05D002634 ORTHO05D003100 4.4e-08 61.2 38 63.2
TAR376G0230 Trochodendron aralioides HOM05D002634 ORTHO05D003100 4.4e-08 61.2 38 63.2
Atru.chr3.237 Acer truncatum HOM05D002634 ORTHO05D003100 5.7e-08 60.8 38 63.2
Gohir.D03G025900 Gossypium hirsutum HOM05D002634 ORTHO05D003100 5.7e-08 60.8 38 60.5
Gohir.D11G051400 Gossypium hirsutum HOM05D002634 ORTHO05D003100 5.7e-08 60.8 38 63.2
Gorai.007G055800 Gossypium raimondii HOM05D002634 ORTHO05D003100 5.7e-08 60.8 38 63.2
Manes.12G109000 Manihot esculenta HOM05D002634 ORTHO05D003100 5.7e-08 60.8 39 61.5
Potri.005G144400 Populus trichocarpa HOM05D002634 ORTHO05D003100 5.7e-08 60.8 38 63.2
Hund16370 Selenicereus undatus HOM05D002634 ORTHO05D003100 5.7e-08 60.8 38 68.4
BcaC06g34819 Brassica carinata HOM05D002634 ORTHO05D003100 7.5e-08 60.5 38 63.2
Cc07_g06500 Coffea canephora HOM05D002634 ORTHO05D003100 7.5e-08 60.5 39 61.5
Cc10_g05270 Coffea canephora HOM05D002634 ORTHO05D003100 7.5e-08 60.5 39 64.1
Lalb_Chr08g0245421 Lupinus albus HOM05D002634 ORTHO05D003100 7.5e-08 60.5 38 63.2
Rhsim06G0058000 Rhododendron simsii HOM05D002634 ORTHO05D003100 7.5e-08 60.5 38 68.4
RcHm_v2.0_Chr2g0107021 Rosa chinensis HOM05D002634 ORTHO05D003100 7.5e-08 60.5 38 63.2
SalBow7G2278 Salvia bowleyana HOM05D002634 ORTHO05D003100 7.5e-08 60.5 38 65.8
Sed0007301 Sechium edule HOM05D002634 ORTHO05D003100 7.5e-08 60.5 38 60.5
TWI73G0945 Tripterygium wilfordii HOM05D002634 ORTHO05D003100 7.5e-08 60.5 39 61.5
unitig_8.g3367 Utricularia gibba HOM05D002634 ORTHO05D003100 7.5e-08 60.5 39 64.1
vmacro21472 Vaccinium macrocarpon HOM05D002634 ORTHO05D003100 7.5e-08 60.5 38 68.4
arahy.Tifrunner.gnm1.ann1.H8DGBI Arachis hypogaea HOM05D002634 ORTHO05D003100 9.8e-08 60.1 38 63.2
CSS0010477 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 9.8e-08 60.1 38 65.8
CSS0042779 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 9.8e-08 60.1 38 65.8
Gorai.003G027600 Gossypium raimondii HOM05D002634 ORTHO05D003100 9.8e-08 60.1 38 60.5
Lj4A762T8 Lonicera japonica HOM05D002634 ORTHO05D003100 9.8e-08 60.1 38 65.8
Psat4g083960 Pisum sativum HOM05D002634 ORTHO05D003100 9.8e-08 60.1 38 63.2
AT5G67320 Arabidopsis thaliana HOM05D002634 ORTHO05D003100 1.3e-07 59.7 38 60.5
CSS0014373 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.3e-07 59.7 38 68.4
CSS0045917 Camellia sinensis var. sinensis HOM05D002634 ORTHO05D003100 1.3e-07 59.7 38 68.4
Dinv39256 Davidia involucrata HOM05D002634 ORTHO05D003100 1.3e-07 59.7 38 65.8
Nn5g30448 Nelumbo nucifera HOM05D002634 ORTHO05D003100 1.3e-07 59.7 38 63.2
Prupe.6G226500 Prunus persica HOM05D002634 ORTHO05D003100 1.3e-07 59.7 81 38.3
Hund05323 Selenicereus undatus HOM05D002634 ORTHO05D003100 1.3e-07 59.7 38 63.2
TAR381G1718 Trochodendron aralioides HOM05D002634 ORTHO05D003100 1.3e-07 59.7 38 60.5
unitig_22.g6760 Utricularia gibba HOM05D002634 ORTHO05D003100 1.3e-07 59.7 38 63.2
arahy.Tifrunner.gnm1.ann1.8C3BXP Arachis hypogaea HOM05D002634 ORTHO05D003100 1.7e-07 59.3 38 63.2
arahy.Tifrunner.gnm1.ann1.KSX8X1 Arachis hypogaea HOM05D002634 ORTHO05D003100 1.7e-07 59.3 38 63.2
EL10Ac6g15682 Beta vulgaris HOM05D002634 ORTHO05D003100 1.7e-07 59.3 38 63.2
Lalb_Chr16g0378751 Lupinus albus HOM05D002634 ORTHO05D003100 1.7e-07 59.3 39 59.0
Nitab4.5_0000569g0150 Nicotiana tabacum HOM05D002634 ORTHO05D003100 1.7e-07 59.3 39 61.5
Nitab4.5_0000838g0220 Nicotiana tabacum HOM05D002634 ORTHO05D003100 1.7e-07 59.3 39 61.5
Peaxi162Scf00848g00317 Petunia axillaris HOM05D002634 ORTHO05D003100 1.7e-07 59.3 39 64.1
Sc02g0007620 Simmondsia chinensis HOM05D002634 ORTHO05D003100 1.7e-07 59.3 38 63.2
Carub.0008s2717 Capsella rubella HOM05D002634 ORTHO05D003100 2.2e-07 58.9 38 60.5
AUR62038259 Chenopodium quinoa HOM05D002634 ORTHO05D003100 2.2e-07 58.9 38 63.2
COL.COLO4_11505 Corchorus olitorius HOM05D002634 ORTHO05D003100 2.2e-07 58.9 38 60.5
ECA247G2795 Erigeron canadensis HOM05D002634 ORTHO05D003100 2.2e-07 58.9 38 63.2
Gohir.A11G047800 Gossypium hirsutum HOM05D002634 ORTHO05D003100 2.2e-07 58.9 38 60.5
HanXRQChr04g0103361 Helianthus annuus HOM05D002634 ORTHO05D003100 2.2e-07 58.9 38 63.2
Peaxi162Scf00160g00029 Petunia axillaris HOM05D002634 ORTHO05D003100 2.2e-07 58.9 39 64.1
Solyc05g014460.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 2.2e-07 58.9 74 40.5
TPR.G26905 Trifolium pratense HOM05D002634 ORTHO05D003100 2.2e-07 58.9 44 56.8
Actinidia22667 Actinidia chinensis HOM05D002634 ORTHO05D003100 2.8e-07 58.5 38 63.2
CAN.G107.42 Capsicum annuum HOM05D002634 ORTHO05D003100 2.8e-07 58.5 38 65.8
Dinv35913 Davidia involucrata HOM05D002634 ORTHO05D003100 2.8e-07 58.5 38 63.2
Thhalv10003834m.g Eutrema salsugineum HOM05D002634 ORTHO05D003100 2.8e-07 58.5 38 60.5
Hma1.2p1_0240F.1_g100120 Hydrangea macrophylla HOM05D002634 ORTHO05D003100 2.8e-07 58.5 38 63.2
SEGI_04363 Sequoiadendron giganteum HOM05D002634 ORTHO05D003100 2.8e-07 58.5 38 60.5
TPR.G23895 Trifolium pratense HOM05D002634 ORTHO05D003100 2.8e-07 58.5 38 60.5
TAR625G1461 Trochodendron aralioides HOM05D002634 ORTHO05D003100 2.8e-07 58.5 38 52.6
BcaB04g20066 Brassica carinata HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
BcaC04g23207 Brassica carinata HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
A09p09440 Brassica napus HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
C09p11120 Brassica napus HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
BolC9t54001H Brassica oleracea HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
BraA09t36593Z Brassica rapa HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
CiPaw.01G009600 Carya illinoinensis HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
Ca_13940_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
FvH4_1g16940 Fragaria vesca HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
FAN19G3064 Fragaria x ananassa HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
FAN23G0361 Fragaria x ananassa HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
FAN26G0639 Fragaria x ananassa HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
FAN28G0371 Fragaria x ananassa HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
Glyma.05G100500 Glycine max HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 57.9
PSO170G2848 Papaver somniferum HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
PSO210G0654 Papaver somniferum HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
QL02p003120 Quercus lobata HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 63.2
QL03p022872 Quercus lobata HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 63.2
Sc16g0001440 Simmondsia chinensis HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 57.9
Solyc04g078320.4 Solanum lycopersicum HOM05D002634 ORTHO05D003100 3.7e-07 58.2 39 61.5
Sopen04g031910 Solanum pennellii HOM05D002634 ORTHO05D003100 3.7e-07 58.2 39 61.5
SGA_v2.0_scaffold102G29893 Striga asiatica HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
SGA_v2.0_scaffold214G42258 Striga asiatica HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 60.5
VMungo1309G3030 Vigna mungo HOM05D002634 ORTHO05D003100 3.7e-07 58.2 38 63.2
Zm00001eb419800 Zea mays HOM05D002634 ORTHO05D003100 3.7e-07 58.2 39 61.5
Actinidia03814 Actinidia chinensis HOM05D002634 ORTHO05D003100 4.9e-07 57.8 39 59.0
Actinidia08243 Actinidia chinensis HOM05D002634 ORTHO05D003100 4.9e-07 57.8 39 59.0
Actinidia21249 Actinidia chinensis HOM05D002634 ORTHO05D003100 4.9e-07 57.8 39 59.0
Glyma.04G043300 Glycine max HOM05D002634 ORTHO05D003100 4.9e-07 57.8 38 60.5
Glyma.06G043800 Glycine max HOM05D002634 ORTHO05D003100 4.9e-07 57.8 38 60.5
Lsat_1_v5_gn_1_24041 Lactuca sativa HOM05D002634 ORTHO05D003100 4.9e-07 57.8 38 63.2
Lj2g0012944 Lotus japonicus HOM05D002634 ORTHO05D003100 4.9e-07 57.8 39 56.4
MD15G1075300 Malus domestica HOM05D002634 ORTHO05D003100 4.9e-07 57.8 38 60.5
Phvul.009G068800 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 4.9e-07 57.8 38 60.5
HPP92_020480 Vanilla planifolia HOM05D002634 ORTHO05D003100 4.9e-07 57.8 65 43.1
Zm00001eb088250 Zea mays HOM05D002634 ORTHO05D003100 4.9e-07 57.8 39 59.0
AL8G44010 Arabidopsis lyrata HOM05D002634 ORTHO05D003100 6.3e-07 57.4 38 57.9
Duzib264G1043 Durio zibethinus HOM05D002634 ORTHO05D003100 6.3e-07 57.4 38 57.9
Eucgr.I00742 Eucalyptus grandis HOM05D002634 ORTHO05D003100 6.3e-07 57.4 37 59.5
MD15G1290400 Malus domestica HOM05D002634 ORTHO05D003100 6.3e-07 57.4 38 60.5
Os07g0405100 Oryza sativa ssp. japonica HOM05D002634 ORTHO05D003100 6.3e-07 57.4 39 59.0
PGSC0003DMG400038331 Solanum tuberosum HOM05D002634 ORTHO05D003100 6.3e-07 57.4 39 64.1
CARHR280290 Cardamine hirsuta HOM05D002634 ORTHO05D003100 8.3e-07 57.0 38 57.9
Cfa018035 Carpinus fangiana HOM05D002634 ORTHO05D003100 8.3e-07 57.0 38 63.2
Haze_18089 Corylus avellana HOM05D002634 ORTHO05D003100 8.3e-07 57.0 38 63.2
Migut.C00519 Erythranthe guttata HOM05D002634 ORTHO05D003100 8.3e-07 57.0 38 60.5
HanXRQChr05g0133391 Helianthus annuus HOM05D002634 ORTHO05D003100 8.3e-07 57.0 38 60.5
MD02G1179800 Malus domestica HOM05D002634 ORTHO05D003100 8.3e-07 57.0 38 57.9
Psat2g169320 Pisum sativum HOM05D002634 ORTHO05D003100 8.3e-07 57.0 39 56.4
Prupe.1G428200 Prunus persica HOM05D002634 ORTHO05D003100 8.3e-07 57.0 38 60.5
Sp2g29340 Schrenkiella parvula HOM05D002634 ORTHO05D003100 8.3e-07 57.0 38 57.9
A07p16570 Brassica napus HOM05D002634 ORTHO05D003100 1.1e-06 56.6 38 60.5
CiPaw.16G035100 Carya illinoinensis HOM05D002634 ORTHO05D003100 1.1e-06 56.6 38 60.5
SMO118G0254 Selaginella moellendorffii HOM05D002634 ORTHO05D003100 1.1e-06 56.6 38 57.9
Solyc12g088620.2 Solanum lycopersicum HOM05D002634 ORTHO05D003100 1.1e-06 56.6 43 60.5
Mapoly0104s0042 Marchantia polymorpha HOM05D002634 ORTHO05D003100 1.4e-06 56.2 38 57.9
Oeu011602.1 Olea europaea HOM05D002634 ORTHO05D003100 1.4e-06 56.2 39 56.4
Aa31LG1G15870 Aethionema arabicum HOM05D002634 ORTHO05D003100 1.8e-06 55.8 38 60.5
ATR0041G007 Amborella trichopoda HOM05D002634 ORTHO05D003100 1.8e-06 55.8 38 57.9
MSTRG.25062 Avicennia marina HOM05D002634 ORTHO05D003100 1.8e-06 55.8 38 57.9
CDE02G1419 Ceratophyllum demersum HOM05D002634 ORTHO05D003100 1.8e-06 55.8 38 57.9
CBR_g32362 Chara braunii HOM05D002634 ORTHO05D003100 1.8e-06 55.8 37 62.2
AUR62003945 Chenopodium quinoa HOM05D002634 ORTHO05D003100 1.8e-06 55.8 38 60.5
Ca_24733_v3 Cicer arietinum L. HOM05D002634 ORTHO05D003100 1.8e-06 55.8 39 53.8
Dinv26878 Davidia involucrata HOM05D002634 ORTHO05D003100 1.8e-06 55.8 38 57.9
Lalb_Chr16g0388841 Lupinus albus HOM05D002634 ORTHO05D003100 1.8e-06 55.8 38 55.3
Pp3c13_5760 Physcomitrium patens HOM05D002634 ORTHO05D003100 1.8e-06 55.8 38 57.9
EL10As7g23823 Beta vulgaris HOM05D002634 ORTHO05D003100 2.4e-06 55.5 38 55.3
FvH4_2g33540 Fragaria vesca HOM05D002634 ORTHO05D003100 2.4e-06 55.5 38 60.5
FAN24G2212 Fragaria x ananassa HOM05D002634 ORTHO05D003100 2.4e-06 55.5 38 60.5
FAN27G3042 Fragaria x ananassa HOM05D002634 ORTHO05D003100 2.4e-06 55.5 38 60.5
Lalb_Chr09g0334001 Lupinus albus HOM05D002634 ORTHO05D003100 2.4e-06 55.5 38 52.6
RcHm_v2.0_Chr6g0308951 Rosa chinensis HOM05D002634 ORTHO05D003100 2.4e-06 55.5 38 60.5
Sopen05g009550 Solanum pennellii HOM05D002634 ORTHO05D003100 2.4e-06 55.5 39 64.1
Sopen12g023530 Solanum pennellii HOM05D002634 ORTHO05D003100 2.4e-06 55.5 80 35.0
Sopen12g030520 Solanum pennellii HOM05D002634 ORTHO05D003100 3.1e-06 55.1 39 61.5
Aqoxy5G01132 Aquilegia oxysepala HOM05D002634 ORTHO05D003100 4.1e-06 54.7 38 57.9
Migut.N02755 Erythranthe guttata HOM05D002634 ORTHO05D003100 4.1e-06 54.7 39 56.4
Migut.O00600 Erythranthe guttata HOM05D002634 ORTHO05D003100 4.1e-06 54.7 39 56.4
Lalb_Chr05g0226131 Lupinus albus HOM05D002634 ORTHO05D003100 4.1e-06 54.7 38 55.3
Solyc12g088540.3 Solanum lycopersicum HOM05D002634 ORTHO05D003100 5.4e-06 54.3 39 61.5
Sopen12g030510 Solanum pennellii HOM05D002634 ORTHO05D003100 5.4e-06 54.3 39 61.5
Medtr4g095058 Medicago truncatula HOM05D002634 ORTHO05D003100 7.0e-06 53.9 38 55.3
Medtr5g016350 Medicago truncatula HOM05D002634 ORTHO05D003100 7.0e-06 53.9 39 51.3
Medtr5g016370 Medicago truncatula HOM05D002634 ORTHO05D003100 9.2e-06 53.5 38 55.3
Phvul.002G014600 Phaseolus vulgaris HOM05D002634 ORTHO05D003100 9.2e-06 53.5 39 56.4
PGSC0003DMG400042597 Solanum tuberosum HOM05D002634 ORTHO05D003100 9.2e-06 53.5 40 57.5
PGSC0003DMG400043199 Solanum tuberosum HOM05D002634 ORTHO05D003100 9.2e-06 53.5 39 56.4


User provided reference genes

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