Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g007120.4 Solanum lycopersicum HOM05D001988 ORTHO05D004985 0.0e+00 1227.6 606 100.0
Sopen09g001990 Solanum pennellii HOM05D001988 ORTHO05D004985 0.0e+00 1163.7 606 96.0
PGSC0003DMG401018705 Solanum tuberosum HOM05D001988 ORTHO05D004985 5.2e-289 997.3 665 78.8
Solyc11g071540.2 Solanum lycopersicum HOM05D001988 ORTHO05D004985 7.8e-285 983.4 665 78.2
Sopen11g029230 Solanum pennellii HOM05D001988 ORTHO05D004985 3.9e-284 981.1 665 78.0
CAN.G439.30 Capsicum annuum HOM05D001988 ORTHO05D004985 8.9e-265 916.8 650 75.7
Peaxi162Scf00217g00713 Petunia axillaris HOM05D001988 ORTHO05D004985 1.1e-254 883.2 695 66.9
Nitab4.5_0007649g0010 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.9e-238 829.3 696 62.2
Nitab4.5_0000428g0180 Nicotiana tabacum HOM05D001988 ORTHO05D004985 6.0e-237 824.3 696 62.1
Actinidia19875 Actinidia chinensis HOM05D001988 ORTHO05D004985 1.1e-166 590.9 703 48.5
GSVIVG01019982001 Vitis vinifera HOM05D001988 ORTHO05D004985 7.3e-166 588.2 646 49.8
Lj8A318G47 Lonicera japonica HOM05D001988 ORTHO05D004985 6.2e-165 585.1 686 47.5
Cc09_g03970 Coffea canephora HOM05D001988 ORTHO05D004985 1.2e-160 570.9 676 48.4
Rhsim12G0063800 Rhododendron simsii HOM05D001988 ORTHO05D004985 3.5e-160 569.3 718 47.2
Lsat_1_v5_gn_8_100701 Lactuca sativa HOM05D001988 ORTHO05D004985 2.1e-157 560.1 659 48.4
MSTRG.27418 Avicennia marina HOM05D001988 ORTHO05D004985 4.9e-154 548.9 698 45.8
Lsat_1_v5_gn_5_156781 Lactuca sativa HOM05D001988 ORTHO05D004985 8.4e-154 548.1 666 47.0
Cfa008981 Carpinus fangiana HOM05D001988 ORTHO05D004985 1.9e-153 547.0 732 42.9
Cpa.g.sc128.24 Carica papaya HOM05D001988 ORTHO05D004985 2.4e-153 546.6 712 45.2
HanXRQChr05g0145521 Helianthus annuus HOM05D001988 ORTHO05D004985 2.4e-153 546.6 662 47.1
HanXRQChr09g0255131 Helianthus annuus HOM05D001988 ORTHO05D004985 1.0e-151 541.2 645 47.4
Eucgr.B03445 Eucalyptus grandis HOM05D001988 ORTHO05D004985 1.3e-151 540.8 704 44.2
ECA248G0899 Erigeron canadensis HOM05D001988 ORTHO05D004985 5.1e-151 538.9 665 46.2
Migut.F02100 Erythranthe guttata HOM05D001988 ORTHO05D004985 8.6e-151 538.1 652 46.3
Prupe.1G174900 Prunus persica HOM05D001988 ORTHO05D004985 2.5e-150 536.6 692 45.8
Manes.01G185700 Manihot esculenta HOM05D001988 ORTHO05D004985 5.6e-150 535.4 716 45.0
vmacro01260 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 5.6e-150 535.4 595 52.1
CANSAT54G1389 Cannabis sativa HOM05D001988 ORTHO05D004985 1.2e-149 534.3 724 43.8
CSS0030030 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D004985 2.1e-149 533.5 711 46.3
Glyma.11G111300 Glycine max HOM05D001988 ORTHO05D004985 2.1e-149 533.5 704 44.0
Phvul.011G039300 Phaseolus vulgaris HOM05D001988 ORTHO05D004985 4.0e-148 529.3 711 43.6
QL03p064038 Quercus lobata HOM05D001988 ORTHO05D004985 2.6e-147 526.6 713 44.2
QL03p063402 Quercus lobata HOM05D001988 ORTHO05D004985 7.6e-147 525.0 713 44.0
SGA_v2.0_scaffold58G20462 Striga asiatica HOM05D001988 ORTHO05D004985 3.8e-146 522.7 667 44.8
MD04G1025400 Malus domestica HOM05D001988 ORTHO05D004985 1.1e-145 521.2 686 44.2
Lsat_1_v5_gn_4_55321 Lactuca sativa HOM05D001988 ORTHO05D004985 5.4e-145 518.8 656 45.9
VMungo1127G0715 Vigna mungo HOM05D001988 ORTHO05D004985 5.4e-145 518.8 710 43.4
FAN21G2649 Fragaria x ananassa HOM05D001988 ORTHO05D004985 7.1e-145 518.5 700 44.6
PGR102G2417 Punica granatum HOM05D001988 ORTHO05D004985 1.6e-144 517.3 693 43.6
SalBow1G3615 Salvia bowleyana HOM05D001988 ORTHO05D004985 1.3e-143 514.2 663 45.1
ClCG11G010950 Citrullus lanatus HOM05D001988 ORTHO05D004985 1.7e-143 513.8 723 43.0
FvH4_3g26291 Fragaria vesca HOM05D001988 ORTHO05D004985 2.3e-143 513.5 701 44.5
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.5e-142 510.8 701 44.4
vmacro01166 Vaccinium macrocarpon HOM05D001988 ORTHO05D004985 4.3e-142 509.2 695 45.0
Lj3g0010541 Lotus japonicus HOM05D001988 ORTHO05D004985 1.3e-141 507.7 704 41.9
Ciclev10030768m.g Citrus clementina HOM05D001988 ORTHO05D004985 2.1e-141 506.9 731 42.1
Sabra10G0129300 Salix brachista HOM05D001988 ORTHO05D004985 2.1e-141 506.9 577 48.9
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.6e-141 506.1 699 44.2
CiPaw.05G135300 Carya illinoinensis HOM05D001988 ORTHO05D004985 4.8e-141 505.8 587 47.7
ECA234G0637 Erigeron canadensis HOM05D001988 ORTHO05D004985 6.9e-140 501.9 663 45.1
Medtr4g057650 Medicago truncatula HOM05D001988 ORTHO05D004985 6.9e-140 501.9 678 43.2
MELO3C008752.2 Cucumis melo HOM05D001988 ORTHO05D004985 1.2e-139 501.1 732 41.5
Ca_20931_v3 Cicer arietinum L. HOM05D001988 ORTHO05D004985 2.6e-139 500.0 708 42.5
Haze_12013 Corylus avellana HOM05D001988 ORTHO05D004985 5.8e-139 498.8 848 38.1
Migut.I00421 Erythranthe guttata HOM05D001988 ORTHO05D004985 7.6e-139 498.4 627 44.3
Psat7g139200 Pisum sativum HOM05D001988 ORTHO05D004985 4.9e-138 495.7 688 42.0
Sed0003814 Sechium edule HOM05D001988 ORTHO05D004985 1.1e-137 494.6 720 41.2
CsaV3_2G009530 Cucumis sativus L. HOM05D001988 ORTHO05D004985 1.2e-136 491.1 591 47.4
Gorai.009G324500 Gossypium raimondii HOM05D001988 ORTHO05D004985 1.2e-136 491.1 707 42.6
Gohir.D05G304800 Gossypium hirsutum HOM05D001988 ORTHO05D004985 3.5e-136 489.6 707 42.3
Thecc.02G346500 Theobroma cacao HOM05D001988 ORTHO05D004985 3.0e-135 486.5 709 42.9
FAN25G3456 Fragaria x ananassa HOM05D001988 ORTHO05D004985 5.1e-135 485.7 589 48.0
arahy.Tifrunner.gnm1.ann1.41IR6N Arachis hypogaea HOM05D001988 ORTHO05D004985 1.9e-134 483.8 724 40.2
TPR.G27077 Trifolium pratense HOM05D001988 ORTHO05D004985 3.3e-134 483.0 667 42.6
Duzib251G0871 Durio zibethinus HOM05D001988 ORTHO05D004985 9.6e-134 481.5 710 42.0
arahy.Tifrunner.gnm1.ann1.AY0VQT Arachis hypogaea HOM05D001988 ORTHO05D004985 1.1e-132 478.0 723 40.0
Lalb_Chr14g0368981 Lupinus albus HOM05D001988 ORTHO05D004985 1.8e-132 477.2 710 42.5
TWI53G0339 Tripterygium wilfordii HOM05D001988 ORTHO05D004985 1.8e-132 477.2 663 43.1
arahy.Tifrunner.gnm1.ann1.8UN484 Arachis hypogaea HOM05D001988 ORTHO05D004985 3.4e-131 473.0 724 39.9
Nn4g23157 Nelumbo nucifera HOM05D001988 ORTHO05D004985 4.5e-131 472.6 708 42.7
Hund05880 Selenicereus undatus HOM05D001988 ORTHO05D004985 2.2e-130 470.3 718 41.6
Medtr4g071660 Medicago truncatula HOM05D001988 ORTHO05D004985 3.8e-130 469.5 657 42.6
AUR62005788 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.2e-129 466.1 674 43.2
unitig_60.g25620 Utricularia gibba HOM05D001988 ORTHO05D004985 6.0e-128 462.2 663 40.7
EL10Ac6g13205 Beta vulgaris HOM05D001988 ORTHO05D004985 7.9e-128 461.8 679 42.4
DCAR_007151 Daucus carota HOM05D001988 ORTHO05D004985 7.9e-128 461.8 697 40.3
Gohir.A05G183600 Gossypium hirsutum HOM05D001988 ORTHO05D004985 6.7e-127 458.8 702 42.2
SHI13475 Sapria himalayana HOM05D001988 ORTHO05D004985 1.5e-126 457.6 648 42.6
Oeu037938.2 Olea europaea HOM05D001988 ORTHO05D004985 1.9e-126 457.2 481 53.4
TPR.G16225 Trifolium pratense HOM05D001988 ORTHO05D004985 3.3e-126 456.4 630 42.2
THA.LOC104805159 Tarenaya hassleriana HOM05D001988 ORTHO05D004985 8.1e-125 451.8 676 41.7
EL10Ac9g22126 Beta vulgaris HOM05D001988 ORTHO05D004985 2.4e-124 450.3 722 40.7
Ah.05g179340 Amaranthus hybridus HOM05D001988 ORTHO05D004985 2.1e-120 437.2 682 40.3
Aqoxy1G01101 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 4.3e-118 429.5 668 40.3
Sc11g0001930 Simmondsia chinensis HOM05D001988 ORTHO05D004985 6.9e-116 422.2 673 40.4
TAR629G1399 Trochodendron aralioides HOM05D001988 ORTHO05D004985 6.9e-116 422.2 534 46.3
Aa31LG2G7390 Aethionema arabicum HOM05D001988 ORTHO05D004985 1.2e-115 421.4 696 39.5
Carub.0005s0183 Capsella rubella HOM05D001988 ORTHO05D004985 1.2e-115 421.4 709 41.5
AL6G52060 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 2.1e-112 410.6 599 42.7
RcHm_v2.0_Chr7g0220021 Rosa chinensis HOM05D001988 ORTHO05D004985 4.6e-112 409.5 528 45.6
AUR62028773 Chenopodium quinoa HOM05D001988 ORTHO05D004985 1.3e-111 407.9 614 42.5
RcHm_v2.0_Chr5g0048641 Rosa chinensis HOM05D001988 ORTHO05D004985 2.3e-111 407.1 513 46.4
Thhalv10027666m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 1.1e-110 404.8 679 39.5
Medtr5g067430 Medicago truncatula HOM05D001988 ORTHO05D004985 2.2e-109 400.6 598 42.0
AL5G12570 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 4.8e-109 399.4 700 39.0
Dinv16646 Davidia involucrata HOM05D001988 ORTHO05D004985 4.8e-109 399.4 403 52.9
AT2G02955 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 2.6e-107 393.7 684 38.3
HPP92_021577 Vanilla planifolia HOM05D001988 ORTHO05D004985 2.9e-106 390.2 672 37.4
Sp7g05500 Schrenkiella parvula HOM05D001988 ORTHO05D004985 5.0e-106 389.4 675 40.6
CDE07G0941 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 2.5e-105 387.1 564 42.0
BolC8t52776H Brassica oleracea HOM05D001988 ORTHO05D004985 5.5e-105 386.0 669 40.2
A09p68050 Brassica napus HOM05D001988 ORTHO05D004985 9.4e-105 385.2 670 39.4
BraA09t42140Z Brassica rapa HOM05D001988 ORTHO05D004985 1.2e-104 384.8 672 39.7
Hma1.2p1_0265F.1_g106750 Hydrangea macrophylla HOM05D001988 ORTHO05D004985 2.1e-104 384.0 403 49.4
BcaC07g42212 Brassica carinata HOM05D001988 ORTHO05D004985 7.9e-104 382.1 663 40.3
C08p52490 Brassica napus HOM05D001988 ORTHO05D004985 1.8e-103 380.9 672 39.6
MBI19_g09828_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D004985 9.7e-102 375.2 538 43.5
PSO017G3571 Papaver somniferum HOM05D001988 ORTHO05D004985 3.2e-97 360.1 624 37.8
PSO063G4641 Papaver somniferum HOM05D001988 ORTHO05D004985 3.2e-97 360.1 519 41.6
Carub.0006s3640 Capsella rubella HOM05D001988 ORTHO05D004985 1.5e-94 351.3 624 38.9
Eucgr.B03444 Eucalyptus grandis HOM05D001988 ORTHO05D004985 2.0e-94 350.9 460 44.6
Zm00001eb284870 Zea mays HOM05D001988 ORTHO05D004985 2.2e-93 347.4 531 38.2
PGSC0003DMG400002020 Solanum tuberosum HOM05D001988 ORTHO05D004985 1.0e-90 338.6 178 94.9
Potri.010G169500 Populus trichocarpa HOM05D001988 ORTHO05D004985 7.2e-89 332.4 400 46.8
Oeu007681.1 Olea europaea HOM05D001988 ORTHO05D004985 2.3e-87 327.4 296 58.4
SEGI_17598 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 5.2e-87 326.2 710 32.8
AUR62008859 Chenopodium quinoa HOM05D001988 ORTHO05D004985 4.8e-85 319.7 362 50.8
CARHR145370 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.5e-81 308.1 475 41.5
SEGI_28471 Sequoiadendron giganteum HOM05D001988 ORTHO05D004985 1.5e-78 298.1 697 30.8
Thhalv10004418m.g Eutrema salsugineum HOM05D001988 ORTHO05D004985 3.0e-71 273.9 368 42.7
Hund25598 Selenicereus undatus HOM05D001988 ORTHO05D004985 4.4e-70 270.0 512 35.7
Pp3c9_8400 Physcomitrium patens HOM05D001988 ORTHO05D004985 7.0e-68 262.7 684 28.9
arahy.Tifrunner.gnm1.ann1.N3HM5N Arachis hypogaea HOM05D001988 ORTHO05D004985 9.5e-65 252.3 395 41.3
Atru.chr11.1785 Acer truncatum HOM05D001988 ORTHO05D004985 1.1e-60 238.8 365 41.6
Peaxi162Scf00342g00711 Petunia axillaris HOM05D001988 ORTHO05D004985 7.0e-60 236.1 442 39.8
Mapoly0075s0087 Marchantia polymorpha HOM05D001988 ORTHO05D004985 2.1e-56 224.6 666 29.0
ATR0782G208 Amborella trichopoda HOM05D001988 ORTHO05D004985 5.8e-54 216.5 353 40.5
AagrBONN_evm.TU.Sc2ySwM_362.1334 Anthoceros agrestis HOM05D001988 ORTHO05D004985 1.3e-53 215.3 620 27.1
COL.COLO4_23013 Corchorus olitorius HOM05D001988 ORTHO05D004985 9.2e-44 182.6 705 26.2
Atru.chr11.1786 Acer truncatum HOM05D001988 ORTHO05D004985 4.3e-41 173.7 141 60.3
Aqoxy5G02833 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.9e-38 162.5 236 41.9
PSO513G0179 Papaver somniferum HOM05D001988 ORTHO05D004985 1.4e-36 158.7 466 30.3
AagrBONN_evm.TU.Sc2ySwM_362.1335 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.6e-35 153.7 579 24.0
Actinidia31897 Actinidia chinensis HOM05D001988 ORTHO05D004985 5.2e-31 140.2 206 44.2
Hund25529 Selenicereus undatus HOM05D001988 ORTHO05D004985 1.4e-28 132.1 226 34.1
Aqoxy5G02832 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 3.0e-26 124.4 235 34.9
RcHm_v2.0_Chr7g0220011 Rosa chinensis HOM05D001988 ORTHO05D004985 2.5e-25 121.3 99 59.6
RcHm_v2.0_Chr5g0048631 Rosa chinensis HOM05D001988 ORTHO05D004985 2.8e-24 117.9 99 59.6
Peaxi162Scf00342g00712 Petunia axillaris HOM05D001988 ORTHO05D004985 2.6e-22 111.3 150 47.3
Medtr4g071850 Medicago truncatula HOM05D001988 ORTHO05D004985 2.9e-21 107.8 197 33.0
CARHR212720 Cardamine hirsuta HOM05D001988 ORTHO05D004985 8.4e-21 106.3 297 32.0
Nitab4.5_0004699g0020 Nicotiana tabacum HOM05D001988 ORTHO05D004985 1.1e-20 105.9 380 28.7
SMO239G0039 Selaginella moellendorffii HOM05D001988 ORTHO05D004985 1.4e-20 105.5 147 38.8
CARHR145380 Cardamine hirsuta HOM05D001988 ORTHO05D004985 1.0e-18 99.4 190 33.7
AagrBONN_evm.TU.Sc2ySwM_117.2968 Anthoceros agrestis HOM05D001988 ORTHO05D004985 3.0e-18 97.8 199 32.7
Aqoxy5G02834 Aquilegia oxysepala HOM05D001988 ORTHO05D004985 9.0e-15 86.3 105 44.8
AagrBONN_evm.TU.Sc2ySwM_369.75 Anthoceros agrestis HOM05D001988 ORTHO05D004985 7.1e-12 76.6 237 26.2
AT1G42615 Arabidopsis thaliana HOM05D001988 ORTHO05D004985 6.0e-11 73.6 132 37.9
AL7G47160 Arabidopsis lyrata HOM05D001988 ORTHO05D004985 1.3e-10 72.4 232 29.3
CDE06G2098 Ceratophyllum demersum HOM05D001988 ORTHO05D004985 1.5e-09 68.9 284 23.6
EL10As5g23508 Beta vulgaris HOM05D001988 ORTHO05D004985 9.6e-09 66.2 67 52.2
Sp2g13990 Schrenkiella parvula HOM05D001988 ORTHO05D004985 3.7e-08 64.3 191 28.8
CARHR289080 Cardamine hirsuta HOM05D001988 ORTHO05D004985 6.2e-08 63.5 65 52.3
QL03p063393 Quercus lobata HOM05D001988 ORTHO05D004985 5.3e-07 60.5 50 54.0
QL03p064050 Quercus lobata HOM05D001988 ORTHO05D004985 3.4e-06 57.8 60 50.0
MCO03G550 Micromonas commoda HOM05D001988 ORTHO05D004985 5.8e-06 57.0 111 29.7
Atru.chr11.1787 Acer truncatum HOM05D001988 ORTHO05D004985 1.0e-05 56.2 57 43.9


User provided reference genes

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