Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g077750.4 Solanum lycopersicum HOM05D005140 ORTHO05D006288 3.2e-280 968.0 581 100.0
Sopen08g026270 Solanum pennellii HOM05D005140 ORTHO05D006288 1.8e-262 909.1 453 99.3
CAN.G572.25 Capsicum annuum HOM05D005140 ORTHO05D006288 1.4e-238 829.7 446 92.8
Peaxi162Scf00301g01111 Petunia axillaris HOM05D005140 ORTHO05D006288 1.8e-230 802.7 423 90.1
Gorai.004G191200 Gossypium raimondii HOM05D005140 ORTHO05D006288 3.6e-223 778.5 414 87.2
Rhsim07G0119600 Rhododendron simsii HOM05D005140 ORTHO05D006288 1.5e-221 773.1 416 87.0
MSTRG.13768 Avicennia marina HOM05D005140 ORTHO05D006288 2.6e-221 772.3 451 80.5
Gohir.D08G182300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 9.9e-221 770.4 414 86.5
Thecc.03G238100 Theobroma cacao HOM05D005140 ORTHO05D006288 2.4e-219 765.8 416 85.8
SGA_v2.0_scaffold20G09272 Striga asiatica HOM05D005140 ORTHO05D006288 5.4e-219 764.6 428 84.1
Migut.F01520 Erythranthe guttata HOM05D005140 ORTHO05D006288 1.2e-218 763.5 415 83.9
Lalb_Chr09g0324091 Lupinus albus HOM05D005140 ORTHO05D006288 1.3e-217 760.0 419 83.5
Atru.chr9.1157 Acer truncatum HOM05D005140 ORTHO05D006288 6.7e-217 757.7 417 84.7
Dinv25152 Davidia involucrata HOM05D005140 ORTHO05D006288 9.6e-216 753.8 448 80.4
CiPaw.12G056200 Carya illinoinensis HOM05D005140 ORTHO05D006288 1.3e-215 753.4 417 84.4
Hund14471 Selenicereus undatus HOM05D005140 ORTHO05D006288 1.3e-215 753.4 420 85.0
Glyma.01G204000 Glycine max HOM05D005140 ORTHO05D006288 2.8e-215 752.3 415 83.6
Prupe.5G053400 Prunus persica HOM05D005140 ORTHO05D006288 3.7e-215 751.9 420 85.0
Nitab4.5_0012059g0010 Nicotiana tabacum HOM05D005140 ORTHO05D006288 4.8e-215 751.5 447 82.3
Cc08_g11170 Coffea canephora HOM05D005140 ORTHO05D006288 8.1e-215 750.7 460 78.0
COL.COLO4_06693 Corchorus olitorius HOM05D005140 ORTHO05D006288 2.4e-214 749.2 453 79.2
TAR636G3078 Trochodendron aralioides HOM05D005140 ORTHO05D006288 4.0e-214 748.4 420 82.9
Glyma.11G039000 Glycine max HOM05D005140 ORTHO05D006288 6.9e-214 747.7 447 78.3
Nn6g33739 Nelumbo nucifera HOM05D005140 ORTHO05D006288 9.0e-214 747.3 418 82.5
ClCG09G012630 Citrullus lanatus HOM05D005140 ORTHO05D006288 1.2e-213 746.9 419 83.1
vmacro23518 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 1.2e-213 746.9 416 85.3
Eucgr.D02138 Eucalyptus grandis HOM05D005140 ORTHO05D006288 2.0e-213 746.1 430 81.6
MELO3C003340.2 Cucumis melo HOM05D005140 ORTHO05D006288 3.4e-213 745.3 420 83.1
Manes.01G182900 Manihot esculenta HOM05D005140 ORTHO05D006288 3.4e-213 745.3 416 83.4
Phvul.002G002400 Phaseolus vulgaris HOM05D005140 ORTHO05D006288 4.5e-213 745.0 420 82.4
Sed0013740 Sechium edule HOM05D005140 ORTHO05D006288 5.8e-213 744.6 417 83.0
Nitab4.5_0004689g0020 Nicotiana tabacum HOM05D005140 ORTHO05D006288 7.6e-213 744.2 432 83.3
CsaV3_3G049760 Cucumis sativus L. HOM05D005140 ORTHO05D006288 9.9e-213 743.8 420 82.9
PGR031G2829 Punica granatum HOM05D005140 ORTHO05D006288 1.3e-212 743.4 419 82.3
Gohir.A08G162300 Gossypium hirsutum HOM05D005140 ORTHO05D006288 6.4e-212 741.1 414 84.8
Sed0020438 Sechium edule HOM05D005140 ORTHO05D006288 1.4e-211 740.0 419 82.6
TWI60G0080 Tripterygium wilfordii HOM05D005140 ORTHO05D006288 2.7e-210 735.7 416 82.9
Psat2g175480 Pisum sativum HOM05D005140 ORTHO05D006288 4.6e-210 734.9 421 82.4
Lsat_1_v5_gn_6_94760 Lactuca sativa HOM05D005140 ORTHO05D006288 6.0e-210 734.6 423 83.7
FAN13G1317 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.3e-209 733.4 423 83.2
DCAR_008319 Daucus carota HOM05D005140 ORTHO05D006288 1.8e-209 733.0 420 81.9
FvH4_5g20680 Fragaria vesca HOM05D005140 ORTHO05D006288 1.8e-209 733.0 423 83.2
RcHm_v2.0_Chr7g0206411 Rosa chinensis HOM05D005140 ORTHO05D006288 1.8e-209 733.0 422 82.7
Lj2g0026795 Lotus japonicus HOM05D005140 ORTHO05D006288 2.3e-209 732.6 421 81.7
QL12p008469 Quercus lobata HOM05D005140 ORTHO05D006288 2.3e-209 732.6 417 82.7
Ca_24617_v3 Cicer arietinum L. HOM05D005140 ORTHO05D006288 3.0e-209 732.3 422 82.5
Potri.001G149900 Populus trichocarpa HOM05D005140 ORTHO05D006288 3.0e-209 732.3 415 81.4
FAN08G1378 Fragaria x ananassa HOM05D005140 ORTHO05D006288 5.1e-209 731.5 424 83.3
arahy.Tifrunner.gnm1.ann1.FH98R9 Arachis hypogaea HOM05D005140 ORTHO05D006288 8.7e-209 730.7 424 81.4
arahy.Tifrunner.gnm1.ann1.W7TPG2 Arachis hypogaea HOM05D005140 ORTHO05D006288 8.7e-209 730.7 424 81.4
FAN04G2093 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.1e-208 730.3 422 83.2
CANSAT21G2106 Cannabis sativa HOM05D005140 ORTHO05D006288 3.3e-208 728.8 435 80.2
Dinv28888 Davidia involucrata HOM05D005140 ORTHO05D006288 1.3e-207 726.9 389 86.4
Duzib068G0986 Durio zibethinus HOM05D005140 ORTHO05D006288 3.7e-207 725.3 387 86.6
Haze_08349 Corylus avellana HOM05D005140 ORTHO05D006288 8.2e-207 724.2 426 80.8
unitig_699.g19774 Utricularia gibba HOM05D005140 ORTHO05D006288 8.2e-207 724.2 420 80.7
Actinidia31490 Actinidia chinensis HOM05D005140 ORTHO05D006288 6.9e-206 721.1 455 76.0
Ah.12g053860 Amaranthus hybridus HOM05D005140 ORTHO05D006288 1.2e-205 720.3 445 80.2
EL10Ac5g12239 Beta vulgaris HOM05D005140 ORTHO05D006288 2.7e-202 709.1 455 75.6
Sabra01G0119900 Salix brachista HOM05D005140 ORTHO05D006288 3.9e-201 705.3 456 73.9
vmacro14121 Vaccinium macrocarpon HOM05D005140 ORTHO05D006288 6.7e-201 704.5 416 82.0
ECA240G1687 Erigeron canadensis HOM05D005140 ORTHO05D006288 1.5e-200 703.4 420 80.0
Aqoxy3G02576 Aquilegia oxysepala HOM05D005140 ORTHO05D006288 9.0e-198 694.1 423 77.5
Medtr5g013580 Medicago truncatula HOM05D005140 ORTHO05D006288 2.6e-197 692.6 421 77.4
TPR.G22969 Trifolium pratense HOM05D005140 ORTHO05D006288 1.4e-195 686.8 427 77.3
MD00G1132300 Malus domestica HOM05D005140 ORTHO05D006288 1.9e-195 686.4 422 78.9
Ciclev10019303m.g Citrus clementina HOM05D005140 ORTHO05D006288 1.6e-194 683.3 387 83.2
PSO063G3549 Papaver somniferum HOM05D005140 ORTHO05D006288 2.7e-194 682.6 421 79.1
PSO782G2508 Papaver somniferum HOM05D005140 ORTHO05D006288 3.6e-194 682.2 421 79.1
MD06G1045500 Malus domestica HOM05D005140 ORTHO05D006288 3.0e-193 679.1 428 77.3
Nn1g00730 Nelumbo nucifera HOM05D005140 ORTHO05D006288 3.0e-193 679.1 415 77.1
Carub.0007s2375 Capsella rubella HOM05D005140 ORTHO05D006288 8.2e-191 671.0 419 75.9
THA.LOC104798349 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 3.1e-190 669.1 421 76.2
AT4G17620 Arabidopsis thaliana HOM05D005140 ORTHO05D006288 1.5e-189 666.8 455 72.3
GSVIVG01013286001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.4e-187 660.2 349 88.3
HanXRQChr03g0089631 Helianthus annuus HOM05D005140 ORTHO05D006288 1.6e-186 656.8 421 76.0
CARHR224350 Cardamine hirsuta HOM05D005140 ORTHO05D006288 1.8e-185 653.3 420 74.0
BcaC06g33554 Brassica carinata HOM05D005140 ORTHO05D006288 2.3e-185 652.9 420 74.0
BcaNung03452 Brassica carinata HOM05D005140 ORTHO05D006288 2.3e-185 652.9 417 74.8
Sp7g16510 Schrenkiella parvula HOM05D005140 ORTHO05D006288 8.8e-185 651.0 419 73.7
A03p50570 Brassica napus HOM05D005140 ORTHO05D006288 3.3e-184 649.0 423 73.8
BcaNung00074 Brassica carinata HOM05D005140 ORTHO05D006288 1.3e-183 647.1 422 73.5
Thhalv10024864m.g Eutrema salsugineum HOM05D005140 ORTHO05D006288 6.3e-183 644.8 419 73.5
BolC7t45397H Brassica oleracea HOM05D005140 ORTHO05D006288 2.4e-182 642.9 434 71.7
C01p11300 Brassica napus HOM05D005140 ORTHO05D006288 3.1e-182 642.5 418 73.2
BraA03t14147Z Brassica rapa HOM05D005140 ORTHO05D006288 5.3e-182 641.7 422 73.0
C07p48890 Brassica napus HOM05D005140 ORTHO05D006288 1.5e-181 640.2 434 71.4
Aa31LG6G380 Aethionema arabicum HOM05D005140 ORTHO05D006288 1.7e-180 636.7 430 71.9
ATR0665G273 Amborella trichopoda HOM05D005140 ORTHO05D006288 3.8e-180 635.6 427 71.0
FAN18G3556 Fragaria x ananassa HOM05D005140 ORTHO05D006288 1.1e-179 634.0 386 80.1
HPP92_020526 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.9e-179 633.3 418 72.7
AUR62007191 Chenopodium quinoa HOM05D005140 ORTHO05D006288 9.4e-179 630.9 378 78.8
A01p09690 Brassica napus HOM05D005140 ORTHO05D006288 5.2e-177 625.2 420 72.1
Lj9A525T29 Lonicera japonica HOM05D005140 ORTHO05D006288 4.8e-175 618.6 363 80.7
SGA_v2.0_scaffold6G03141 Striga asiatica HOM05D005140 ORTHO05D006288 1.1e-174 617.5 385 76.9
BraA01t00912Z Brassica rapa HOM05D005140 ORTHO05D006288 4.1e-174 615.5 426 70.7
BcaC09g51625 Brassica carinata HOM05D005140 ORTHO05D006288 9.1e-174 614.4 420 71.0
MBI04_g38568_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 1.2e-173 614.0 390 76.2
Aa31LG9G15140 Aethionema arabicum HOM05D005140 ORTHO05D006288 3.5e-173 612.5 457 68.1
BcaNung06713 Brassica carinata HOM05D005140 ORTHO05D006288 2.9e-172 609.4 390 74.4
HPP92_028085 Vanilla planifolia HOM05D005140 ORTHO05D006288 5.5e-171 605.1 419 71.4
Lj2C253G13 Lonicera japonica HOM05D005140 ORTHO05D006288 1.3e-167 594.0 472 65.0
HPP92_022002 Vanilla planifolia HOM05D005140 ORTHO05D006288 1.8e-166 590.1 414 68.8
THA.LOC104814458 Tarenaya hassleriana HOM05D005140 ORTHO05D006288 2.0e-165 586.6 450 63.8
CDE04G2928 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 2.2e-164 583.2 395 70.9
Sc01g0007900 Simmondsia chinensis HOM05D005140 ORTHO05D006288 4.8e-159 565.5 319 82.1
VMungo0239G0001 Vigna mungo HOM05D005140 ORTHO05D006288 8.3e-159 564.7 314 84.1
AUR62018812 Chenopodium quinoa HOM05D005140 ORTHO05D006288 9.1e-158 561.2 306 84.0
MBI04_g46822_MAGBIO Magnolia biondii HOM05D005140 ORTHO05D006288 8.0e-154 548.1 341 76.2
Os05g0392100 Oryza sativa ssp. japonica HOM05D005140 ORTHO05D006288 8.6e-140 501.5 335 72.2
Hma1.2p1_1672F.1_g296780 Hydrangea macrophylla HOM05D005140 ORTHO05D006288 1.4e-134 484.2 311 74.9
Zm00001eb287280 Zea mays HOM05D005140 ORTHO05D006288 3.0e-132 476.5 296 77.7
GSVIVG01013283001 Vitis vinifera HOM05D005140 ORTHO05D006288 2.3e-129 466.8 427 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2637 Anthoceros agrestis HOM05D005140 ORTHO05D006288 1.3e-124 451.1 452 52.0
SHI07711 Sapria himalayana HOM05D005140 ORTHO05D006288 3.9e-124 449.5 323 68.1
Pp3c10_5020 Physcomitrium patens HOM05D005140 ORTHO05D006288 7.3e-123 445.3 449 51.7
Mapoly0062s0029 Marchantia polymorpha HOM05D005140 ORTHO05D006288 1.1e-115 421.4 363 56.5
CDE12G0612 Ceratophyllum demersum HOM05D005140 ORTHO05D006288 3.1e-113 413.3 323 61.9
BolC1t01096H Brassica oleracea HOM05D005140 ORTHO05D006288 5.6e-107 392.5 218 83.0
SMO259G0041 Selaginella moellendorffii HOM05D005140 ORTHO05D006288 9.6e-107 391.7 327 54.7
Oeu017029.1 Olea europaea HOM05D005140 ORTHO05D006288 1.4e-102 377.9 190 90.0
Peaxi162Scf00715g00010 Petunia axillaris HOM05D005140 ORTHO05D006288 7.4e-99 365.5 231 79.7
CBR_g48842 Chara braunii HOM05D005140 ORTHO05D006288 2.1e-90 337.4 423 46.6
Cpa.g.sc98.58 Carica papaya HOM05D005140 ORTHO05D006288 3.5e-85 320.1 259 62.5
Oeu062963.3 Olea europaea HOM05D005140 ORTHO05D006288 1.6e-69 268.1 254 57.5
QL12p008508 Quercus lobata HOM05D005140 ORTHO05D006288 1.5e-59 235.0 151 76.2
Psat1g146680 Pisum sativum HOM05D005140 ORTHO05D006288 2.4e-49 201.1 114 82.5
Thecc.03G238400 Theobroma cacao HOM05D005140 ORTHO05D006288 3.8e-47 193.7 167 62.9
Oeu017031.1 Olea europaea HOM05D005140 ORTHO05D006288 8.5e-47 192.6 135 72.6
MCO13G373 Micromonas commoda HOM05D005140 ORTHO05D006288 8.3e-34 149.4 290 35.2
Cpa.g.c32337.2 Carica papaya HOM05D005140 ORTHO05D006288 5.4e-33 146.7 107 70.1
Cre07.g338400 Chlamydomonas reinhardtii HOM05D005140 ORTHO05D006288 8.9e-28 129.4 269 34.9
MD10G1199900 Malus domestica HOM05D005140 ORTHO05D006288 1.5e-27 128.6 79 77.2
SEGI_19334 Sequoiadendron giganteum HOM05D005140 ORTHO05D000001 3.4e-27 127.5 92 67.4
Cfa024662 Carpinus fangiana HOM05D005140 ORTHO05D006288 2.8e-21 107.8 319 29.2
GSVIVG01001794001 Vitis vinifera HOM05D005140 ORTHO05D006288 1.3e-18 99.0 80 61.2
DCAR_016064 Daucus carota HOM05D005140 ORTHO05D006288 2.7e-16 91.3 52 78.8
ECA233G4689 Erigeron canadensis HOM05D005140 ORTHO05D006288 4.0e-12 77.4 83 51.8
PGSC0003DMG400001826 Solanum tuberosum HOM05D005140 ORTHO05D006288 3.7e-10 70.9 58 91.4
Gohir.A08G083762 Gossypium hirsutum HOM05D005140 ORTHO05D006288 3.2e-09 67.8 29 93.1


User provided reference genes

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