Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g068110.1 Solanum lycopersicum HOM05D003889 ORTHO05D004407 0.0e+00 1360.1 706 100.0
Sopen08g021990 Solanum pennellii HOM05D003889 ORTHO05D004407 0.0e+00 1327.0 704 98.0
CAN.G886.4 Capsicum annuum HOM05D003889 ORTHO05D004407 0.0e+00 1099.7 726 80.9
Nitab4.5_0000250g0220 Nicotiana tabacum HOM05D003889 ORTHO05D004407 0.0e+00 1096.3 706 82.6
Nitab4.5_0008974g0010 Nicotiana tabacum HOM05D003889 ORTHO05D004407 3.5e-297 1024.6 679 80.9
Peaxi162Scf00105g00416 Petunia axillaris HOM05D003889 ORTHO05D004407 5.5e-290 1000.7 696 78.0
PGSC0003DMG400014493 Solanum tuberosum HOM05D003889 ORTHO05D004407 4.0e-256 888.3 509 91.4
Dinv30246 Davidia involucrata HOM05D003889 ORTHO05D004407 4.2e-189 665.6 730 54.4
Lj7C708G10 Lonicera japonica HOM05D003889 ORTHO05D004407 2.1e-185 653.3 739 53.9
Actinidia13307 Actinidia chinensis HOM05D003889 ORTHO05D004407 5.0e-174 615.5 733 52.1
Atru.chr7.2295 Acer truncatum HOM05D003889 ORTHO05D004407 8.8e-171 604.7 734 51.5
QL12p026194 Quercus lobata HOM05D003889 ORTHO05D004407 2.2e-169 600.1 753 49.5
Migut.A00236 Erythranthe guttata HOM05D003889 ORTHO05D004407 2.4e-168 596.7 725 51.0
Rhsim02G0183600 Rhododendron simsii HOM05D003889 ORTHO05D004407 5.3e-168 595.5 749 51.7
Cc08_g08480 Coffea canephora HOM05D003889 ORTHO05D004407 6.9e-168 595.1 735 50.7
CSS0006872 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 1.0e-166 591.3 723 52.3
Oeu018088.1 Olea europaea HOM05D003889 ORTHO05D004407 9.4e-165 584.7 718 51.1
Ciclev10007228m.g Citrus clementina HOM05D003889 ORTHO05D004407 2.7e-164 583.2 734 50.3
Haze_21830 Corylus avellana HOM05D003889 ORTHO05D004407 6.1e-164 582.0 737 49.5
Oeu031571.1 Olea europaea HOM05D003889 ORTHO05D004407 1.4e-163 580.9 718 50.6
Thecc.09G038600 Theobroma cacao HOM05D003889 ORTHO05D004407 5.3e-160 568.9 722 50.3
Gorai.013G218600 Gossypium raimondii HOM05D003889 ORTHO05D004407 2.0e-159 567.0 722 49.9
Prupe.1G453900 Prunus persica HOM05D003889 ORTHO05D004407 4.5e-159 565.8 722 48.8
Manes.03G066340 Manihot esculenta HOM05D003889 ORTHO05D004407 1.3e-158 564.3 730 49.7
TAR636G2332 Trochodendron aralioides HOM05D003889 ORTHO05D004407 3.2e-157 559.7 764 48.0
GSVIVG01035684001 Vitis vinifera HOM05D003889 ORTHO05D004407 1.2e-156 557.8 730 49.2
TWI34G0995 Tripterygium wilfordii HOM05D003889 ORTHO05D004407 1.6e-156 557.4 734 50.0
CiPaw.07G208100 Carya illinoinensis HOM05D003889 ORTHO05D004407 2.7e-156 556.6 735 49.3
Duzib150G0348 Durio zibethinus HOM05D003889 ORTHO05D004407 4.7e-156 555.8 729 49.2
Cpa.g.sc78.93 Carica papaya HOM05D003889 ORTHO05D004407 6.1e-156 555.4 738 50.1
Potri.018G036600 Populus trichocarpa HOM05D003889 ORTHO05D004407 2.3e-155 553.5 737 49.0
Nn8g39185 Nelumbo nucifera HOM05D003889 ORTHO05D004407 4.0e-155 552.7 765 47.2
SGA_v2.0_scaffold243G44298 Striga asiatica HOM05D003889 ORTHO05D004407 9.1e-152 541.6 730 48.4
Aqoxy7G01675 Aquilegia oxysepala HOM05D003889 ORTHO05D004407 8.5e-150 535.0 786 45.3
Gohir.A13G185900 Gossypium hirsutum HOM05D003889 ORTHO05D004407 4.2e-149 532.7 715 48.4
FvH4_2g36240 Fragaria vesca HOM05D003889 ORTHO05D004407 6.1e-148 528.9 731 48.2
DCAR_000737 Daucus carota HOM05D003889 ORTHO05D004407 8.0e-148 528.5 728 47.7
RcHm_v2.0_Chr6g0305641 Rosa chinensis HOM05D003889 ORTHO05D004407 8.0e-148 528.5 731 47.5
FAN27G2633 Fragaria x ananassa HOM05D003889 ORTHO05D004407 1.2e-146 524.6 745 47.2
Glyma.14G140800 Glycine max HOM05D003889 ORTHO05D004407 2.0e-146 523.9 731 47.2
Lj1g0022555 Lotus japonicus HOM05D003889 ORTHO05D004407 1.1e-144 518.1 734 47.8
FAN15G2018 Fragaria x ananassa HOM05D003889 ORTHO05D004407 5.4e-144 515.8 733 46.9
Aa31LG2G16920 Aethionema arabicum HOM05D003889 ORTHO05D004407 2.9e-142 510.0 766 45.4
MD08G1120000 Malus domestica HOM05D003889 ORTHO05D004407 2.9e-142 510.0 697 46.9
PGR044G0516 Punica granatum HOM05D003889 ORTHO05D004407 5.0e-142 509.2 735 46.8
MBI04_g19381_MAGBIO Magnolia biondii HOM05D003889 ORTHO05D004407 1.9e-141 507.3 820 43.5
Sc23g0005860 Simmondsia chinensis HOM05D003889 ORTHO05D004407 1.6e-140 504.2 774 45.9
Sed0021057 Sechium edule HOM05D003889 ORTHO05D004407 2.1e-140 503.8 736 46.1
MELO3C011159.2 Cucumis melo HOM05D003889 ORTHO05D004407 3.6e-140 503.1 730 47.1
ECA233G2562 Erigeron canadensis HOM05D003889 ORTHO05D004407 3.6e-140 503.1 711 45.6
AT4G32700 Arabidopsis thaliana HOM05D003889 ORTHO05D004407 4.7e-140 502.7 729 45.7
BcaC09g52063 Brassica carinata HOM05D003889 ORTHO05D004407 2.3e-139 500.4 731 45.3
TPR.G12075 Trifolium pratense HOM05D003889 ORTHO05D004407 3.0e-139 500.0 715 45.9
Ca_12818_v3 Cicer arietinum L. HOM05D003889 ORTHO05D004407 5.2e-139 499.2 720 46.5
THA.LOC104818599 Tarenaya hassleriana HOM05D003889 ORTHO05D004407 5.2e-139 499.2 738 45.9
Hund03446 Selenicereus undatus HOM05D003889 ORTHO05D004407 1.2e-138 498.0 730 46.2
C01p06220 Brassica napus HOM05D003889 ORTHO05D004407 1.5e-138 497.7 734 46.0
AL7G19040 Arabidopsis lyrata HOM05D003889 ORTHO05D004407 2.6e-138 496.9 728 44.9
A01p05650 Brassica napus HOM05D003889 ORTHO05D004407 3.4e-138 496.5 732 46.3
Lalb_Chr24g0402621 Lupinus albus HOM05D003889 ORTHO05D004407 3.4e-138 496.5 736 46.3
Sp7g30460 Schrenkiella parvula HOM05D003889 ORTHO05D004407 5.7e-138 495.7 740 46.8
CsaV3_2G031090 Cucumis sativus L. HOM05D003889 ORTHO05D004407 1.3e-137 494.6 730 46.7
PSO782G2669 Papaver somniferum HOM05D003889 ORTHO05D004407 1.7e-137 494.2 766 44.6
CARHR240680 Cardamine hirsuta HOM05D003889 ORTHO05D004407 3.7e-137 493.0 730 45.9
BraA01t00535Z Brassica rapa HOM05D003889 ORTHO05D004407 6.3e-137 492.3 743 45.9
PSO198G0085 Papaver somniferum HOM05D003889 ORTHO05D004407 6.3e-137 492.3 769 44.6
Psat6g033880 Pisum sativum HOM05D003889 ORTHO05D004407 8.3e-137 491.9 718 46.2
A08p18050 Brassica napus HOM05D003889 ORTHO05D004407 5.4e-136 489.2 727 45.9
VMungo0647G0349 Vigna mungo HOM05D003889 ORTHO05D004407 7.0e-136 488.8 721 45.1
Phvul.008G158500 Phaseolus vulgaris HOM05D003889 ORTHO05D004407 2.7e-135 486.9 723 44.3
Lsat_1_v5_gn_6_11181 Lactuca sativa HOM05D003889 ORTHO05D004407 3.5e-135 486.5 713 45.9
HanXRQChr14g0435171 Helianthus annuus HOM05D003889 ORTHO05D004407 4.5e-135 486.1 716 44.6
arahy.Tifrunner.gnm1.ann1.D2VLN9 Arachis hypogaea HOM05D003889 ORTHO05D004407 2.3e-134 483.8 724 45.9
AUR62023039 Chenopodium quinoa HOM05D003889 ORTHO05D004407 6.6e-134 482.3 731 45.3
BraA08t33755Z Brassica rapa HOM05D003889 ORTHO05D004407 8.6e-134 481.9 739 45.5
arahy.Tifrunner.gnm1.ann1.NKLE2F Arachis hypogaea HOM05D003889 ORTHO05D004407 3.3e-133 479.9 723 45.8
Medtr1g008600 Medicago truncatula HOM05D003889 ORTHO05D004407 3.3e-133 479.9 729 45.5
COL.COLO4_18706 Corchorus olitorius HOM05D003889 ORTHO05D004407 5.6e-133 479.2 590 48.6
EL10Ac2g04091 Beta vulgaris HOM05D003889 ORTHO05D004407 3.6e-132 476.5 732 45.5
C03p87160 Brassica napus HOM05D003889 ORTHO05D004407 4.7e-132 476.1 728 44.8
BcaB03g12757 Brassica carinata HOM05D003889 ORTHO05D004407 3.0e-131 473.4 739 44.9
SalBow4G0524 Salvia bowleyana HOM05D003889 ORTHO05D004407 3.0e-131 473.4 776 44.5
Carub.0007s0783 Capsella rubella HOM05D003889 ORTHO05D004407 5.2e-131 472.6 728 44.0
BolC3t21018H Brassica oleracea HOM05D003889 ORTHO05D004407 8.9e-131 471.9 734 44.1
AUR62009357 Chenopodium quinoa HOM05D003889 ORTHO05D004407 1.7e-129 467.6 736 44.2
ClCG08G012400 Citrullus lanatus HOM05D003889 ORTHO05D004407 1.0e-123 448.4 728 44.0
FAN20G0810 Fragaria x ananassa HOM05D003889 ORTHO05D004407 4.4e-122 443.0 718 43.9
Eucgr.C02886 Eucalyptus grandis HOM05D003889 ORTHO05D004407 1.4e-115 421.4 526 49.0
Os12g0291000 Oryza sativa ssp. japonica HOM05D003889 ORTHO05D004407 1.8e-115 421.0 761 41.0
Ah.10g035410 Amaranthus hybridus HOM05D003889 ORTHO05D004407 2.3e-115 420.6 732 42.3
Thhalv10024191m.g Eutrema salsugineum HOM05D003889 ORTHO05D004407 6.8e-115 419.1 485 51.5
ATR0916G007 Amborella trichopoda HOM05D003889 ORTHO05D004407 3.2e-112 410.2 813 39.6
HPP92_002909 Vanilla planifolia HOM05D003889 ORTHO05D004407 4.1e-112 409.8 777 39.8
CSS0033742 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 8.6e-110 402.1 396 59.1
Zm00001eb409880 Zea mays HOM05D003889 ORTHO05D004407 6.0e-103 379.4 769 37.7
unitig_37.g12219 Utricularia gibba HOM05D003889 ORTHO05D004407 8.4e-97 359.0 732 38.5
Pp3c1_24760 Physcomitrium patens HOM05D003889 ORTHO05D004407 1.0e-78 298.9 256 59.4
AagrBONN_evm.TU.Sc2ySwM_117.2429 Anthoceros agrestis HOM05D003889 ORTHO05D004407 1.4e-75 288.5 518 38.2
Pp3c5_12930 Physcomitrium patens HOM05D003889 ORTHO05D004407 4.9e-73 280.0 234 62.8
PGSC0003DMG400014494 Solanum tuberosum HOM05D003889 ORTHO05D004407 8.4e-73 279.3 159 92.5
Mapoly0097s0045 Marchantia polymorpha HOM05D003889 ORTHO05D004407 4.2e-72 276.9 363 44.1
SHI18632 Sapria himalayana HOM05D003889 ORTHO05D004407 1.3e-70 271.9 190 73.7
Gohir.D13G192600 Gossypium hirsutum HOM05D003889 ORTHO05D004407 1.1e-67 262.3 164 80.5
CBR_g998 Chara braunii HOM05D003889 ORTHO05D004407 1.4e-54 218.8 149 66.4
CSS0036613 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 9.7e-53 212.6 172 70.9
CSS0044117 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 1.1e-51 209.1 181 67.4
CSS0042394 Camellia sinensis var. sinensis HOM05D003889 ORTHO05D004407 6.9e-51 206.5 182 66.5
Cre16.g664301 Chlamydomonas reinhardtii HOM05D003889 ORTHO05D004407 1.9e-48 198.4 236 47.5
SEGI_30069 Sequoiadendron giganteum HOM05D003889 ORTHO05D004407 4.2e-48 197.2 127 76.4
Haze_13402 Corylus avellana HOM05D003889 ORTHO05D004407 5.7e-45 186.8 258 46.1
MCO01G257 Micromonas commoda HOM05D003889 ORTHO05D004407 7.0e-43 179.9 258 42.6
Lsat_1_v5_gn_3_5760 Lactuca sativa HOM05D003889 ORTHO05D004407 3.5e-42 177.6 268 42.9
SHI18636 Sapria himalayana HOM05D003889 ORTHO05D004407 6.5e-33 146.7 386 31.6
PRCOL_00006968 Prasinoderma coloniale HOM05D003889 ORTHO05D004407 6.1e-31 140.2 240 37.5
Cre08.g384390 Chlamydomonas reinhardtii HOM05D003889 ORTHO05D004407 1.4e-30 139.0 207 43.5
Lsat_1_v5_gn_6_24580 Lactuca sativa HOM05D003889 ORTHO05D004407 1.2e-29 136.0 127 59.8
CSS0033543 Camellia sinensis var. sinensis HOM05D000022 ORTHO05D000071 2.6e-29 134.8 87 80.5
Lsat_1_v5_gn_4_66900 Lactuca sativa HOM05D003889 ORTHO05D004407 5.7e-29 133.7 100 70.0
Lsat_1_v5_gn_8_47340 Lactuca sativa HOM05D003889 ORTHO05D002785 1.7e-28 132.1 100 69.0
Aqoxy520s001 Aquilegia oxysepala HOM05D003889 ORTHO05D004407 6.8e-22 110.2 75 76.0
Actinidia24572 Actinidia chinensis HOM05D003889 ORTHO05D004407 9.2e-19 99.8 64 79.7
CDE05G0389 Ceratophyllum demersum HOM05D003889 ORTHO05D004407 2.0e-18 98.6 175 37.1
SEGI_15374 Sequoiadendron giganteum HOM05D003889 ORTHO05D004407 1.1e-16 92.8 67 70.1
CDE05G0843 Ceratophyllum demersum HOM05D003889 ORTHO05D004407 2.1e-15 88.6 53 81.1
Lsat_1_v5_gn_6_75601 Lactuca sativa HOM05D003889 ORTHO05D004407 8.3e-12 76.6 49 73.5
ATR0064G009 Amborella trichopoda HOM05D000924 ORTHO05D001209 1.2e-07 62.8 246 27.2
Sp1g18660 Schrenkiella parvula HOM05D000924 ORTHO05D001209 1.2e-07 62.8 202 23.8
PRCOL_00000726 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 1.6e-07 62.4 202 28.2
ClCG05G013070 Citrullus lanatus HOM05D000924 ORTHO05D001209 2.1e-07 62.0 199 26.6
PRCOL_00003356 Prasinoderma coloniale HOM05D000924 ORTHO05D001209 2.8e-07 61.6 213 28.2
AagrBONN_evm.TU.Sc2ySwM_228.4663 Anthoceros agrestis HOM05D000924 ORTHO05D001209 3.6e-07 61.2 182 25.8
Hma1.2p1_0914F.1_g236150 Hydrangea macrophylla HOM05D000924 ORTHO05D001209 6.2e-07 60.5 197 22.8
Mapoly0046s0099 Marchantia polymorpha HOM05D000924 ORTHO05D001209 6.2e-07 60.5 192 29.2
FvH4_5g13990 Fragaria vesca HOM05D000924 ORTHO05D001209 8.0e-07 60.1 192 28.6
FAN18G1430 Fragaria x ananassa HOM05D000924 ORTHO05D001209 8.0e-07 60.1 192 28.6
Potri.015G056501 Populus trichocarpa HOM05D000924 ORTHO05D001209 8.0e-07 60.1 212 25.9
MCO14G361 Micromonas commoda HOM05D000924 ORTHO05D001209 1.0e-06 59.7 192 28.6
PSO017G0961 Papaver somniferum HOM05D000924 ORTHO05D001209 1.8e-06 58.9 191 26.7
PSO478G0555 Papaver somniferum HOM05D000924 ORTHO05D001209 1.8e-06 58.9 191 26.7
TAR624G1422 Trochodendron aralioides HOM05D000924 ORTHO05D001209 1.8e-06 58.9 198 24.2
Pp3c5_3790 Physcomitrium patens HOM05D000924 ORTHO05D007614 2.3e-06 58.5 200 23.0
SHI31129 Sapria himalayana HOM05D000924 ORTHO05D001209 2.3e-06 58.5 199 25.6
TWI60G0107 Tripterygium wilfordii HOM05D000924 ORTHO05D001209 3.1e-06 58.2 191 26.7
CDE06G1554 Ceratophyllum demersum HOM05D000924 ORTHO05D001209 4.0e-06 57.8 194 28.4
PGR083G0994 Punica granatum HOM05D000924 ORTHO05D001209 4.0e-06 57.8 191 27.2
SMO195G0012 Selaginella moellendorffii HOM05D000924 ORTHO05D001209 4.0e-06 57.8 192 27.6
Zm00001eb184840 Zea mays HOM05D000924 ORTHO05D007614 4.0e-06 57.8 210 23.8
Ciclev10010890m.g Citrus clementina HOM05D000924 ORTHO05D001209 5.2e-06 57.4 199 23.1
Dinv32321 Davidia involucrata HOM05D000924 ORTHO05D001209 5.2e-06 57.4 198 24.7
Eucgr.B00583 Eucalyptus grandis HOM05D000924 ORTHO05D001209 5.2e-06 57.4 191 26.7
HanXRQChr05g0157291 Helianthus annuus HOM05D000924 ORTHO05D001209 5.2e-06 57.4 191 27.2
Nitab4.5_0001328g0010 Nicotiana tabacum HOM05D000924 ORTHO05D001209 5.2e-06 57.4 191 26.7
Nitab4.5_0001688g0120 Nicotiana tabacum HOM05D000924 ORTHO05D001209 5.2e-06 57.4 191 26.7
SalBow7G1805 Salvia bowleyana HOM05D000924 ORTHO05D001209 5.2e-06 57.4 191 27.2
ClCG04G011840 Citrullus lanatus HOM05D000924 ORTHO05D001209 8.9e-06 56.6 191 26.7
CsaV3_1G005930 Cucumis sativus L. HOM05D000924 ORTHO05D001209 8.9e-06 56.6 191 26.7
PSO063G7524 Papaver somniferum HOM05D000924 ORTHO05D001209 8.9e-06 56.6 198 24.7


User provided reference genes

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