Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g067820.3 Solanum lycopersicum HOM05D005584 ORTHO05D006809 8.7e-128 460.3 231 100.0
Sopen08g021760 Solanum pennellii HOM05D005584 ORTHO05D006809 8.5e-123 443.7 231 97.0
PGSC0003DMG400033619 Solanum tuberosum HOM05D005584 ORTHO05D006809 7.2e-122 440.7 231 95.7
Peaxi162Scf00105g01417 Petunia axillaris HOM05D005584 ORTHO05D006809 2.1e-97 359.4 224 82.1
Nitab4.5_0006579g0040 Nicotiana tabacum HOM05D005584 ORTHO05D006809 6.3e-86 321.2 188 84.0
Dinv15274 Davidia involucrata HOM05D001482 ORTHO05D001499 7.0e-85 317.8 232 70.3
vmacro01156 Vaccinium macrocarpon HOM05D005584 ORTHO05D006809 2.2e-78 296.2 232 68.5
CSS0030415 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 3.7e-78 295.4 232 67.2
TAR374G1289 Trochodendron aralioides HOM05D005584 ORTHO05D006809 3.7e-78 295.4 233 66.5
Actinidia08155 Actinidia chinensis HOM05D005584 ORTHO05D006809 6.3e-78 294.7 232 68.1
CiPaw.05G185800 Carya illinoinensis HOM05D005584 ORTHO05D006809 8.3e-78 294.3 232 65.5
Hma1.2p1_0587F.1_g184080 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 4.1e-77 292.0 232 66.8
QL03p059496 Quercus lobata HOM05D005584 ORTHO05D006809 7.0e-77 291.2 234 65.0
Thecc.02G253500 Theobroma cacao HOM05D005584 ORTHO05D006809 2.7e-76 289.3 234 66.7
Ciclev10032655m.g Citrus clementina HOM05D005584 ORTHO05D006809 1.0e-75 287.3 233 65.2
Duzib251G0376 Durio zibethinus HOM05D005584 ORTHO05D006809 5.0e-75 285.0 238 63.9
Migut.E00177 Erythranthe guttata HOM05D005584 ORTHO05D006809 1.5e-74 283.5 235 64.7
MD11G1211500 Malus domestica HOM05D005584 ORTHO05D006809 2.5e-74 282.7 233 61.8
RcHm_v2.0_Chr5g0041131 Rosa chinensis HOM05D005584 ORTHO05D006809 2.5e-74 282.7 233 64.8
GSVIVG01013774001 Vitis vinifera HOM05D005584 ORTHO05D006809 2.5e-74 282.7 233 63.1
MSTRG.2403 Avicennia marina HOM05D005584 ORTHO05D006809 5.6e-74 281.6 233 65.2
Atru.chr11.2060 Acer truncatum HOM05D005584 ORTHO05D006809 9.5e-74 280.8 233 63.1
Prupe.4G221000 Prunus persica HOM05D005584 ORTHO05D006809 1.2e-73 280.4 233 62.7
COL.COLO4_24203 Corchorus olitorius HOM05D005584 ORTHO05D006809 1.6e-73 280.0 238 63.9
FAN16G0047 Fragaria x ananassa HOM05D005584 ORTHO05D006809 6.1e-73 278.1 233 63.1
Gohir.A01G162200 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.8e-72 276.6 233 63.5
Nitab4.5_0000125g0200 Nicotiana tabacum HOM05D005584 ORTHO05D006809 1.8e-72 276.6 161 85.1
Cpa.g.sc69.68 Carica papaya HOM05D005584 ORTHO05D006809 4.0e-72 275.4 233 60.9
FvH4_3g23340 Fragaria vesca HOM05D005584 ORTHO05D006809 6.8e-72 274.6 233 63.5
Manes.12G026800 Manihot esculenta HOM05D005584 ORTHO05D006809 8.9e-72 274.2 233 63.1
PSO017G5970 Papaver somniferum HOM05D005584 ORTHO05D006809 8.9e-72 274.2 233 63.1
CSS0021029 Camellia sinensis var. sinensis HOM05D005584 ORTHO05D006809 2.0e-71 273.1 232 63.8
Oeu056410.1 Olea europaea HOM05D005584 ORTHO05D006809 2.0e-71 273.1 232 62.9
TWI18G1102 Tripterygium wilfordii HOM05D005584 ORTHO05D006809 2.0e-71 273.1 235 63.0
FAN21G3548 Fragaria x ananassa HOM05D005584 ORTHO05D006809 2.6e-71 272.7 233 63.1
Potri.009G167600 Populus trichocarpa HOM05D005584 ORTHO05D006809 2.6e-71 272.7 237 60.8
PGR142G0158 Punica granatum HOM05D005584 ORTHO05D006809 4.4e-71 271.9 234 63.2
Cc08_g15830 Coffea canephora HOM05D005584 ORTHO05D006809 7.5e-71 271.2 232 64.7
FAN25G2737 Fragaria x ananassa HOM05D005584 ORTHO05D006809 7.5e-71 271.2 233 62.7
Lalb_Chr12g0210051 Lupinus albus HOM05D005584 ORTHO05D006809 7.5e-71 271.2 235 61.7
PSO478G2901 Papaver somniferum HOM05D005584 ORTHO05D006809 1.3e-70 270.4 233 62.7
Haze_12208 Corylus avellana HOM05D005584 ORTHO05D006809 1.7e-70 270.0 231 61.0
Eucgr.K03598 Eucalyptus grandis HOM05D005584 ORTHO05D006809 1.7e-70 270.0 233 61.8
Gohir.D08G021700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.7e-70 270.0 233 62.2
Gohir.D05G347832 Gossypium hirsutum HOM05D005584 ORTHO05D006809 4.9e-70 268.5 233 62.2
Sabra09G0130200 Salix brachista HOM05D005584 ORTHO05D006809 8.3e-70 267.7 237 59.5
Gohir.D01G149500 Gossypium hirsutum HOM05D005584 ORTHO05D006809 1.1e-69 267.3 238 62.2
CANSAT56G2850 Cannabis sativa HOM05D005584 ORTHO05D006809 1.4e-69 266.9 233 61.8
arahy.Tifrunner.gnm1.ann1.0L0HR0 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.9e-69 266.5 236 61.9
arahy.Tifrunner.gnm1.ann1.5FW2L6 Arachis hypogaea HOM05D005584 ORTHO05D006809 1.9e-69 266.5 236 61.9
Lsat_1_v5_gn_9_120260 Lactuca sativa HOM05D005584 ORTHO05D006809 1.9e-69 266.5 234 60.3
Ca_28318_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.4e-69 266.2 237 62.9
AUR62014068 Chenopodium quinoa HOM05D005584 ORTHO05D006809 7.0e-69 264.6 234 59.0
Nn2g14080 Nelumbo nucifera HOM05D005584 ORTHO05D006809 7.0e-69 264.6 235 61.3
Medtr5g077780 Medicago truncatula HOM05D005584 ORTHO05D006809 2.0e-68 263.1 235 62.1
Lj1g0002439 Lotus japonicus HOM05D005584 ORTHO05D006809 3.5e-68 262.3 233 62.7
Nn4g22723 Nelumbo nucifera HOM05D005584 ORTHO05D006809 4.6e-68 261.9 235 60.9
Cfa009174 Carpinus fangiana HOM05D005584 ORTHO05D006809 6.0e-68 261.5 211 64.0
Rhsim12G0043700 Rhododendron simsii HOM05D005584 ORTHO05D006809 7.8e-68 261.2 240 60.0
ECA233G2638 Erigeron canadensis HOM05D005584 ORTHO05D006809 1.0e-67 260.8 232 61.2
Lj3g0022996 Lotus japonicus HOM05D005584 ORTHO05D006809 1.3e-67 260.4 233 62.7
Psat2g045680 Pisum sativum HOM05D005584 ORTHO05D006809 2.3e-67 259.6 235 61.7
MBI10_g28000_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.6e-67 258.1 241 59.3
Aqoxy3G01083 Aquilegia oxysepala HOM05D005584 ORTHO05D006809 2.5e-66 256.1 234 60.3
Hund25366 Selenicereus undatus HOM05D005584 ORTHO05D003410 1.2e-65 253.8 272 53.3
Phvul.011G052800 Phaseolus vulgaris HOM05D005584 ORTHO05D006809 3.6e-65 252.3 236 59.7
Sed0009924 Sechium edule HOM05D005584 ORTHO05D006809 8.0e-65 251.1 238 59.2
AL4G22490 Arabidopsis lyrata HOM05D005584 ORTHO05D006809 5.2e-64 248.4 239 58.6
FAN11G0752 Fragaria x ananassa HOM05D005584 ORTHO05D006809 1.2e-63 247.3 207 62.3
Carub.0004s0855 Capsella rubella HOM05D005584 ORTHO05D006809 3.4e-63 245.7 243 57.2
SalBow8G4058 Salvia bowleyana HOM05D005584 ORTHO05D006809 3.4e-63 245.7 223 60.1
BraA07t29554Z Brassica rapa HOM05D005584 ORTHO05D006809 5.8e-63 245.0 242 56.6
CsaV3_2G024710 Cucumis sativus L. HOM05D005584 ORTHO05D006809 1.7e-62 243.4 238 56.7
A07p18380 Brassica napus HOM05D005584 ORTHO05D006809 3.7e-62 242.3 242 56.2
BcaC02g10906 Brassica carinata HOM05D005584 ORTHO05D006809 6.4e-62 241.5 242 56.6
C04p23810 Brassica napus HOM05D005584 ORTHO05D006809 1.9e-61 240.0 242 56.2
Thhalv10017205m.g Eutrema salsugineum HOM05D005584 ORTHO05D006809 2.4e-61 239.6 242 57.0
BcaB02g10116 Brassica carinata HOM05D005584 ORTHO05D006809 3.2e-61 239.2 212 59.0
HanXRQChr12g0371541 Helianthus annuus HOM05D005584 ORTHO05D006809 5.4e-61 238.4 211 60.2
BolC4t23879H Brassica oleracea HOM05D005584 ORTHO05D006809 9.2e-61 237.7 242 55.8
VMungo1127G1231 Vigna mungo HOM05D005584 ORTHO05D006809 1.2e-60 237.3 208 62.5
Sp4g10620 Schrenkiella parvula HOM05D005584 ORTHO05D006809 1.6e-60 236.9 242 56.6
SGA_v2.0_scaffold57G20112 Striga asiatica HOM05D005584 ORTHO05D006809 2.1e-60 236.5 210 60.5
unitig_62.g23668 Utricularia gibba HOM05D005584 ORTHO05D006809 6.0e-60 235.0 234 56.0
CARHR120490 Cardamine hirsuta HOM05D005584 ORTHO05D006809 2.3e-59 233.0 239 55.6
Lj6A807T86 Lonicera japonica HOM05D005584 ORTHO05D006809 2.3e-59 233.0 236 56.8
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.1e-58 230.7 270 51.1
Zm00001eb209860 Zea mays HOM05D005584 ORTHO05D006809 1.4e-56 223.8 272 51.8
Glyma.12G050500 Glycine max HOM05D005584 ORTHO05D006809 1.3e-54 217.2 189 61.4
ClCG08G017930 Citrullus lanatus HOM05D005584 ORTHO05D006809 1.4e-53 213.8 219 55.3
Gorai.009G374800 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.9e-53 213.4 238 55.0
HPP92_004538 Vanilla planifolia HOM05D005584 ORTHO05D006809 2.4e-53 213.0 220 54.1
Dinv24830 Davidia involucrata HOM05D005584 ORTHO05D006809 4.6e-52 208.8 180 64.4
ATR1091G072 Amborella trichopoda HOM05D005584 ORTHO05D006809 8.6e-51 204.5 214 54.7
AT5G27300 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 1.9e-50 203.4 225 53.8
Lsat_1_v5_gn_8_155560 Lactuca sativa HOM05D005584 ORTHO05D006809 2.1e-49 199.9 211 55.0
SGA_v2.0_scaffold74G24685 Striga asiatica HOM05D005584 ORTHO05D006809 2.1e-49 199.9 209 53.1
EL10Ac6g13701 Beta vulgaris HOM05D005584 ORTHO05D006809 2.8e-49 199.5 239 49.4
AUR62005408 Chenopodium quinoa HOM05D005584 ORTHO05D006809 6.2e-49 198.4 234 49.1
TPR.G25316 Trifolium pratense HOM05D005584 ORTHO05D006809 8.1e-49 198.0 122 77.0
Hma1.2p1_0223F.1_g094390 Hydrangea macrophylla HOM05D005584 ORTHO05D006809 4.0e-48 195.7 180 61.7
Gorai.002G185600 Gossypium raimondii HOM05D005584 ORTHO05D006809 6.8e-48 194.9 233 52.4
CDE06G1284 Ceratophyllum demersum HOM05D005584 ORTHO05D006809 6.4e-46 188.3 234 49.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 6.0e-44 181.8 232 50.9
DCAR_026533 Daucus carota HOM05D005584 ORTHO05D006809 3.0e-43 179.5 171 57.3
SEGI_24248 Sequoiadendron giganteum HOM05D005584 ORTHO05D006809 5.1e-43 178.7 257 42.8
BcaB06g28170 Brassica carinata HOM05D005584 ORTHO05D006809 4.3e-42 175.6 122 66.4
Potri.006G221301 Populus trichocarpa HOM05D005584 ORTHO05D006809 5.6e-42 175.3 225 47.1
CAN.G21.11 Capsicum annuum HOM05D005584 ORTHO05D006809 7.3e-42 174.9 107 83.2
Mapoly0029s0094 Marchantia polymorpha HOM05D005584 ORTHO05D006809 7.3e-42 174.9 219 45.2
Eucgr.D00612 Eucalyptus grandis HOM05D005584 ORTHO05D006809 8.1e-41 171.4 189 51.9
Gorai.001G098200 Gossypium raimondii HOM05D005584 ORTHO05D006809 1.2e-39 167.5 216 46.8
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 1.5e-39 167.2 96 77.1
MELO3C010671.2 Cucumis melo HOM05D005584 ORTHO05D006809 1.9e-37 160.2 239 43.1
Pp3c16_13430 Physcomitrium patens HOM05D005584 ORTHO05D006809 1.0e-35 154.5 257 40.1
Sc11g0001080 Simmondsia chinensis HOM05D005584 ORTHO05D006809 5.6e-34 148.7 182 50.5
Ah.02g130030 Amaranthus hybridus HOM05D005584 ORTHO05D006809 6.2e-33 145.2 190 48.4
AT2G27790 Arabidopsis thaliana HOM05D005584 ORTHO05D006809 6.9e-32 141.7 203 45.3
Hund18879 Selenicereus undatus HOM05D005584 ORTHO05D006809 1.3e-25 120.9 128 53.9
QL01p007518 Quercus lobata HOM05D005584 ORTHO05D006809 4.6e-20 102.4 180 41.1
SHI17678 Sapria himalayana HOM05D005584 ORTHO05D006809 6.0e-20 102.1 70 71.4
SMO361G0752 Selaginella moellendorffii HOM05D005584 ORTHO05D006809 5.1e-19 99.0 67 59.7
CAN.G414.8 Capsicum annuum HOM05D000928 ORTHO05D001186 1.1e-18 97.8 50 86.0
COL.COLO4_24201 Corchorus olitorius HOM05D005584 ORTHO05D006809 5.6e-18 95.5 57 70.2
Ca_05838_v3 Cicer arietinum L. HOM05D005584 ORTHO05D006809 2.8e-17 93.2 49 85.7
CBR_g19306 Chara braunii HOM05D005584 ORTHO05D006809 1.3e-14 84.3 69 55.1
BcaB05g23234 Brassica carinata HOM05D005584 ORTHO05D006809 1.7e-14 84.0 68 61.8
Os02g0105000 Oryza sativa ssp. japonica HOM05D005584 ORTHO05D006809 1.9e-13 80.5 48 83.3
MBI12_g21981_MAGBIO Magnolia biondii HOM05D001465 ORTHO05D001434 4.6e-12 75.9 48 79.2
MBI02_g44783_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 5.1e-11 72.4 48 77.1
MBI02_g20871_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 6.7e-11 72.0 48 77.1
Gorai.004G016800 Gossypium raimondii HOM05D005584 ORTHO05D006809 8.7e-11 71.6 55 72.7
MBI02_g25373_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 1.5e-10 70.9 48 75.0
MBI14_g03623_MAGBIO Magnolia biondii HOM05D000013 ORTHO05D006809 1.5e-10 70.9 48 72.9
MBI19_g26621_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.8e-09 66.6 43 76.7
MBI14_g10639_MAGBIO Magnolia biondii HOM05D005584 ORTHO05D006809 2.4e-08 63.5 43 74.4
Glyma.11G125900 Glycine max HOM05D005584 ORTHO05D006809 9.0e-08 61.6 29 93.1
Gohir.D07G091700 Gossypium hirsutum HOM05D005584 ORTHO05D006809 5.9e-07 58.9 38 76.3
MBI03_g02127_MAGBIO Magnolia biondii HOM05D002786 ORTHO05D006809 6.5e-06 55.5 42 64.3


User provided reference genes

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