Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g028910.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.7e-120 435.3 210 100.0
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.2e-107 393.3 209 91.9
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 1.3e-106 389.8 209 91.4
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 4.0e-103 378.3 209 88.5
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 4.0e-103 378.3 209 88.5
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 2.5e-89 332.4 209 80.4
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 5.8e-86 321.2 213 76.5
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 1.7e-85 319.7 210 78.1
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 2.9e-85 318.9 207 77.3
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 2.9e-85 318.9 207 77.3
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 2.9e-85 318.9 207 77.3
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 1.9e-84 316.2 207 77.3
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 2.4e-84 315.8 205 76.1
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 4.6e-83 311.6 209 76.1
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 4.6e-83 311.6 213 74.6
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 2.5e-81 305.8 211 72.0
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 1.2e-80 303.5 217 73.7
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.6e-80 302.0 203 74.4
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 1.5e-78 296.6 213 72.8
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 7.1e-76 287.7 215 69.3
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 2.3e-74 282.7 213 70.4
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 1.9e-73 279.6 213 68.5
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.5e-73 279.3 203 70.9
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 4.3e-73 278.5 214 67.8
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 4.3e-73 278.5 210 71.9
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 9.5e-73 277.3 211 68.7
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 9.5e-73 277.3 211 68.7
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 9.5e-73 277.3 211 68.7
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 2.8e-72 275.8 211 68.2
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 3.6e-72 275.4 210 69.0
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 2.3e-71 272.7 207 71.5
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.5e-70 270.0 211 66.4
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 5.8e-70 268.1 215 66.0
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 7.5e-70 267.7 175 76.0
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 4.9e-69 265.0 215 64.2
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.2e-63 245.0 211 62.1
Gorai.013G018800 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.9e-61 238.4 210 64.3
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 1.4e-60 236.9 223 59.2
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 3.2e-60 235.7 131 87.0
CAN.G511.9 Capsicum annuum HOM05D000216 ORTHO05D000634 9.3e-60 234.2 131 87.0
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 1.3e-58 230.3 131 85.5
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 5.6e-57 224.9 208 60.1
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 5.6e-57 224.9 208 60.1
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 5.6e-57 224.9 208 60.1
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 5.6e-57 224.9 208 60.1
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 5.6e-57 224.9 208 60.1
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 2.9e-53 212.6 208 58.2
SGA_v2.0_scaffold132G34498 Striga asiatica HOM05D000216 ORTHO05D000634 5.4e-52 208.4 160 66.9
Migut.K00966 Erythranthe guttata HOM05D000216 ORTHO05D000634 4.3e-49 198.7 173 61.8
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 9.6e-49 197.6 223 49.3
Atru.chr6.1615 Acer truncatum HOM05D000216 ORTHO05D000634 3.6e-48 195.7 125 73.6
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 8.1e-48 194.5 131 72.5
Gorai.004G210400 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.5e-46 190.3 142 69.0
Gohir.D08G199601 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.7e-45 186.8 146 66.4
Lj1g0027665 Lotus japonicus HOM05D000216 ORTHO05D000634 6.4e-45 184.9 127 72.4
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 6.4e-45 184.9 127 71.7
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.1e-44 184.1 207 53.6
HanXRQChr14g0436641 Helianthus annuus HOM05D000216 ORTHO05D000634 6.0e-43 178.3 125 71.2
Gohir.D13G016950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.9e-42 175.6 169 60.9
Hund04025 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.9e-42 175.6 131 66.4
Gohir.A07G183950 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.9e-41 173.3 187 52.9
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 5.6e-41 171.8 117 75.2
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.8e-40 168.7 110 77.3
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.1e-39 167.5 119 71.4
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 6.9e-39 164.9 224 43.3
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.0e-34 149.4 161 55.9
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.0e-34 149.4 161 55.9
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.0e-34 149.4 161 55.9
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.0e-34 149.4 161 55.9
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 3.9e-34 149.1 106 68.9
Hund18043 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.4e-31 139.8 96 72.9
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 3.1e-31 139.4 93 76.3
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 1.5e-30 137.1 80 85.0
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 3.4e-30 136.0 77 88.3
MSTRG.17791 Avicennia marina HOM05D000216 ORTHO05D000634 4.5e-30 135.6 121 61.2
Lalb_Chr06g0173101 Lupinus albus HOM05D000216 ORTHO05D000634 1.3e-29 134.0 95 71.6
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 2.3e-26 123.2 95 66.3
Gorai.002G075300 Gossypium raimondii HOM05D000216 ORTHO05D000634 5.1e-26 122.1 70 85.7
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 8.7e-26 121.3 79 78.5
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 1.5e-25 120.6 174 46.6
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.5e-25 120.6 79 77.2
Solyc01g056330.2 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.3e-25 119.4 62 90.3
HanXRQChr07g0188321 Helianthus annuus HOM05D000216 ORTHO05D000634 7.4e-25 118.2 68 85.3
TPR.G26480 Trifolium pratense HOM05D000216 ORTHO05D000634 2.2e-24 116.7 81 67.9
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 4.8e-24 115.5 79 69.6
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 3.1e-23 112.8 79 70.9
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 4.1e-23 112.5 79 69.6
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.3e-23 112.1 213 33.8
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 5.9e-22 108.6 74 73.0
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 5.9e-22 108.6 74 73.0
Solyc05g020010.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 5.9e-22 108.6 63 85.7
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 2.9e-21 106.3 60 88.3
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 6.5e-21 105.1 60 86.7
HanXRQChr00c0823g0577631 Helianthus annuus HOM05D000216 ORTHO05D000634 6.5e-21 105.1 62 82.3
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.1e-20 104.4 67 76.1
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 1.4e-20 104.0 61 85.2
Lalb_Chr13g0292901 Lupinus albus HOM05D000216 ORTHO05D000634 1.4e-20 104.0 64 81.2
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 1.9e-20 103.6 64 79.7
GSVIVG01030958001 Vitis vinifera HOM05D000216 ORTHO05D000634 1.9e-20 103.6 66 74.2
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 2.5e-20 103.2 74 70.3
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 4.2e-20 102.4 60 83.3
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 7.2e-20 101.7 58 84.5
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 9.4e-20 101.3 60 85.0
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 1.6e-19 100.5 64 73.4
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-19 100.1 60 83.3
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 2.1e-19 100.1 64 73.4
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 2.1e-19 100.1 60 81.7
Lalb_Chr23g0274571 Lupinus albus HOM05D000216 ORTHO05D000634 7.9e-19 98.2 69 72.5
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 3.9e-18 95.9 56 83.9
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.1e-17 94.4 111 50.5
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 3.3e-17 92.8 56 80.4
arahy.Tifrunner.gnm1.ann1.EI2YTD Arachis hypogaea HOM05D000890 ORTHO05D000697 4.3e-17 92.4 55 80.0
Potri.019G027720 Populus trichocarpa HOM05D000216 ORTHO05D000634 3.7e-16 89.4 62 69.4
HanXRQChr14g0455001 Helianthus annuus HOM05D000216 ORTHO05D000634 4.8e-16 89.0 63 74.6
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 6.3e-16 88.6 58 70.7
Migut.D01341 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.1e-15 87.8 67 71.6
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 2.2e-13 80.1 177 33.3
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.4e-12 77.4 45 84.4
Thhalv10023328m.g Eutrema salsugineum HOM05D000216 ORTHO05D000634 4.2e-12 75.9 82 52.4
Lalb_Chr06g0173001 Lupinus albus HOM05D000216 ORTHO05D000634 6.7e-10 68.6 52 67.3
Aa31csc39G140 Aethionema arabicum HOM05D000216 ORTHO05D000634 8.8e-10 68.2 124 37.9
CARHR056720 Cardamine hirsuta HOM05D000216 ORTHO05D000634 2.0e-09 67.0 35 91.4
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 5.7e-09 65.5 42 76.2
arahy.Tifrunner.gnm1.ann1.8W122S Arachis hypogaea HOM05D000216 ORTHO05D000634 4.8e-08 62.4 58 55.2
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 4.1e-07 59.3 73 52.1


User provided reference genes

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