Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 3.0e-125 451.8 225 100.0
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 1.0e-101 373.6 182 100.0
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 3.0e-101 372.1 182 99.5
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 4.9e-99 364.8 182 96.7
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 6.4e-99 364.4 182 97.8
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 9.5e-95 350.5 182 94.5
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 2.8e-94 349.0 182 92.9
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 3.1e-93 345.5 182 91.8
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 3.4e-92 342.0 182 90.1
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 5.8e-92 341.3 198 85.9
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 9.8e-92 340.5 182 90.1
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 9.2e-90 334.0 181 89.0
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 2.0e-89 332.8 181 88.4
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 7.8e-89 330.9 182 85.7
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 1.7e-88 329.7 182 86.8
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 2.3e-88 329.3 202 78.7
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 3.0e-88 328.9 202 78.7
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 8.6e-88 327.4 182 84.6
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 8.6e-88 327.4 182 84.1
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 1.1e-87 327.0 182 84.1
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 7.3e-87 324.3 182 83.5
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 9.5e-87 323.9 202 77.2
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 1.2e-86 323.6 200 78.0
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 1.2e-86 323.6 181 86.2
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 1.6e-86 323.2 200 77.0
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 1.6e-86 323.2 200 77.0
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 2.1e-86 322.8 182 84.1
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 3.6e-86 322.0 182 84.1
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 4.7e-86 321.6 182 83.0
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 1.8e-85 319.7 182 83.5
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 1.8e-85 319.7 200 76.5
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 4.0e-85 318.5 199 76.4
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 4.0e-85 318.5 181 82.3
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 4.0e-85 318.5 182 82.4
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 5.2e-85 318.2 182 81.3
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 5.2e-85 318.2 200 75.5
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 6.8e-85 317.8 182 81.9
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 8.9e-85 317.4 200 76.0
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 8.9e-85 317.4 200 76.0
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 1.2e-84 317.0 200 74.0
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 1.2e-84 317.0 182 81.9
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 1.5e-84 316.6 207 74.9
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 1.5e-84 316.6 182 80.8
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 1.5e-84 316.6 181 81.8
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 2.6e-84 315.8 182 81.9
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 2.6e-84 315.8 181 80.1
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 3.4e-84 315.5 199 76.4
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 4.4e-84 315.1 200 76.5
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 4.4e-84 315.1 182 81.3
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 5.8e-84 314.7 181 82.9
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 5.8e-84 314.7 181 82.9
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 5.8e-84 314.7 199 75.9
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 5.8e-84 314.7 182 80.8
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 5.8e-84 314.7 200 74.5
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 7.5e-84 314.3 200 74.0
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 9.8e-84 313.9 199 74.9
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 1.3e-83 313.5 182 83.0
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 1.3e-83 313.5 183 80.9
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 1.3e-83 313.5 181 82.3
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 1.3e-83 313.5 200 75.0
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 1.3e-83 313.5 200 75.5
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 1.3e-83 313.5 181 79.6
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 1.3e-83 313.5 200 75.0
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 1.7e-83 313.2 199 75.9
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 1.7e-83 313.2 199 75.4
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 2.2e-83 312.8 199 74.9
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 2.2e-83 312.8 181 79.0
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 2.9e-83 312.4 181 81.2
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 4.9e-83 311.6 200 74.0
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 4.9e-83 311.6 200 74.0
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 4.9e-83 311.6 200 74.5
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 6.4e-83 311.2 182 79.1
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 8.3e-83 310.8 181 80.7
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 1.1e-82 310.5 200 74.0
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 1.1e-82 310.5 181 80.1
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 1.4e-82 310.1 181 80.1
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 1.9e-82 309.7 202 76.7
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 1.9e-82 309.7 181 78.5
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 2.4e-82 309.3 199 73.9
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 3.2e-82 308.9 200 73.5
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 3.2e-82 308.9 200 73.5
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 3.2e-82 308.9 200 73.5
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 4.1e-82 308.5 200 72.5
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 5.4e-82 308.1 199 73.9
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 5.4e-82 308.1 200 73.5
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 7.1e-82 307.8 182 84.1
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 9.2e-82 307.4 200 73.5
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 9.2e-82 307.4 181 77.9
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 3.5e-81 305.4 199 72.4
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 3.5e-81 305.4 199 72.4
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 3.5e-81 305.4 199 72.4
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 3.5e-81 305.4 199 72.4
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 3.5e-81 305.4 199 72.4
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 3.5e-81 305.4 182 79.1
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 4.6e-81 305.1 200 73.5
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 3.9e-80 302.0 199 71.4
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 1.5e-79 300.1 181 77.9
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 2.5e-79 299.3 150 97.3
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 4.3e-79 298.5 181 77.3
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 5.6e-79 298.1 175 78.3
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 3.6e-78 295.4 175 80.0
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 4.7e-78 295.0 181 77.3
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 6.2e-78 294.7 199 70.9
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 8.1e-78 294.3 184 74.5
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 5.2e-77 291.6 196 73.5
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 2.6e-76 289.3 181 72.4
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 3.4e-76 288.9 182 73.1
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 8.1e-70 267.7 182 66.5
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 1.1e-69 267.3 181 68.5
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 7.1e-66 254.6 200 58.5
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 9.3e-66 254.2 182 60.4
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 2.3e-64 249.6 137 90.5
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 1.7e-59 233.4 175 59.4
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 1.5e-52 210.3 202 48.0
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 6.4e-51 204.9 123 78.9
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 5.5e-50 201.8 148 69.6
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 2.5e-47 193.0 183 48.1
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 2.5e-42 176.4 184 46.7
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 4.6e-33 145.6 183 39.9
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 4.3e-31 139.0 194 38.7
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 2.2e-22 110.2 74 66.2
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 1.7e-14 84.0 88 51.1
ECA233G1860 Erigeron canadensis HOM05D000013 ORTHO05D000011 1.4e-08 64.3 88 44.3
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 4.4e-07 59.3 38 68.4


User provided reference genes

Program Settings