Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g040910.3 Solanum lycopersicum HOM05D001027 ORTHO05D000844 3.4e-59 231.5 120 100.0
Sopen07g019970 Solanum pennellii HOM05D001027 ORTHO05D000844 1.2e-48 196.4 105 99.0
CAN.G52.16 Capsicum annuum HOM05D001027 ORTHO05D000844 6.5e-42 174.1 105 87.6
Nitab4.5_0001519g0120 Nicotiana tabacum HOM05D001027 ORTHO05D000844 1.4e-33 146.4 102 76.5
Peaxi162Scf00494g00102 Petunia axillaris HOM05D001027 ORTHO05D000844 3.2e-33 145.2 102 75.5
Nitab4.5_0003606g0040 Nicotiana tabacum HOM05D001027 ORTHO05D000844 4.2e-33 144.8 102 76.5
vmacro17140 Vaccinium macrocarpon HOM05D001027 ORTHO05D000844 5.9e-27 124.4 104 65.4
Dinv42342 Davidia involucrata HOM05D001027 ORTHO05D000844 1.3e-26 123.2 102 64.7
CSS0030254 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 4.2e-25 118.2 103 64.1
Hma1.2p1_0672F.1_g200980 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 7.2e-25 117.5 102 61.8
Thecc.06G115200 Theobroma cacao HOM05D001027 ORTHO05D000844 2.1e-24 115.9 102 63.7
Actinidia39707 Actinidia chinensis HOM05D001027 ORTHO05D000844 1.4e-23 113.2 102 57.8
Cc06_g11670 Coffea canephora HOM05D001027 ORTHO05D000844 6.7e-23 110.9 102 56.9
Duzib235G1421 Durio zibethinus HOM05D001027 ORTHO05D000844 8.8e-23 110.5 102 60.8
ECA234G4183 Erigeron canadensis HOM05D001027 ORTHO05D000844 8.8e-23 110.5 102 54.9
Rhsim05G0016500 Rhododendron simsii HOM05D001027 ORTHO05D000844 8.8e-23 110.5 104 59.6
TAR624G1250 Trochodendron aralioides HOM05D001027 ORTHO05D000844 8.8e-23 110.5 104 58.7
HanXRQChr12g0354691 Helianthus annuus HOM05D001027 ORTHO05D000844 2.6e-22 109.0 103 57.3
Manes.04G141700 Manihot esculenta HOM05D001027 ORTHO05D000844 2.6e-22 109.0 103 61.2
Gorai.009G143000 Gossypium raimondii HOM05D001027 ORTHO05D000844 5.7e-22 107.8 102 58.8
Gohir.A05G136700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 7.5e-22 107.5 102 58.8
Gohir.D05G138700 Gossypium hirsutum HOM05D001027 ORTHO05D000844 7.5e-22 107.5 102 58.8
QL05p009530 Quercus lobata HOM05D001027 ORTHO05D000844 1.7e-21 106.3 104 56.7
Actinidia39094 Actinidia chinensis HOM05D001027 ORTHO05D000844 4.8e-21 104.8 104 58.7
Actinidia26042 Actinidia chinensis HOM05D001027 ORTHO05D000844 1.1e-20 103.6 104 57.7
Manes.16G099700 Manihot esculenta HOM05D001027 ORTHO05D000844 1.8e-20 102.8 104 57.7
QL02p062075 Quercus lobata HOM05D001027 ORTHO05D000844 1.8e-20 102.8 107 57.9
GSVIVG01015170001 Vitis vinifera HOM05D001027 ORTHO05D000844 4.1e-20 101.7 104 55.8
Oeu055350.2 Olea europaea HOM05D001027 ORTHO05D000844 5.3e-20 101.3 102 56.9
MSTRG.26444 Avicennia marina HOM05D001027 ORTHO05D000844 1.6e-19 99.8 102 55.9
SalBow1G6362 Salvia bowleyana HOM05D001027 ORTHO05D000844 1.6e-19 99.8 102 52.9
Ciclev10026245m.g Citrus clementina HOM05D001027 ORTHO05D000844 2.0e-19 99.4 104 56.7
TWI34G0703 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 2.7e-19 99.0 107 53.3
CiPaw.01G222500 Carya illinoinensis HOM05D001027 ORTHO05D000844 5.9e-19 97.8 104 51.0
ClCG07G013890 Citrullus lanatus HOM05D001027 ORTHO05D000844 5.9e-19 97.8 106 54.7
MELO3C013078.2 Cucumis melo HOM05D001027 ORTHO05D000844 5.9e-19 97.8 107 54.2
PGR142G1838 Punica granatum HOM05D001027 ORTHO05D000844 1.0e-18 97.1 110 47.3
Oeu051298.2 Olea europaea HOM05D001027 ORTHO05D000844 1.3e-18 96.7 102 57.8
Hma1.2p1_1128F.1_g259680 Hydrangea macrophylla HOM05D001027 ORTHO05D000844 1.7e-18 96.3 97 55.7
Potri.018G066300 Populus trichocarpa HOM05D001027 ORTHO05D000844 6.5e-18 94.4 104 54.8
COL.COLO4_30692 Corchorus olitorius HOM05D001027 ORTHO05D000844 1.1e-17 93.6 104 51.0
Migut.L01522 Erythranthe guttata HOM05D001027 ORTHO05D000844 1.9e-17 92.8 101 52.5
Glyma.07G007200 Glycine max HOM05D001027 ORTHO05D000844 1.9e-17 92.8 107 50.5
Duzib187G0581 Durio zibethinus HOM05D001027 ORTHO05D000844 3.2e-17 92.0 103 51.5
Haze_25941 Corylus avellana HOM05D001027 ORTHO05D000844 4.2e-17 91.7 102 52.0
TWI32G0968 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 4.2e-17 91.7 102 53.9
Cpa.g.sc25.81 Carica papaya HOM05D001027 ORTHO05D000844 5.5e-17 91.3 105 49.5
Ciclev10009173m.g Citrus clementina HOM05D001027 ORTHO05D000844 5.5e-17 91.3 104 51.0
Glyma.08G189900 Glycine max HOM05D001027 ORTHO05D000844 5.5e-17 91.3 107 49.5
Thecc.09G085000 Theobroma cacao HOM05D001027 ORTHO05D000844 7.2e-17 90.9 102 52.0
Atru.chr7.1631 Acer truncatum HOM05D001027 ORTHO05D000844 9.4e-17 90.5 104 52.9
DCAR_010506 Daucus carota HOM05D001027 ORTHO05D000844 1.2e-16 90.1 103 46.6
HanXRQChr10g0319501 Helianthus annuus HOM05D001027 ORTHO05D000844 1.6e-16 89.7 103 48.5
Phvul.010G136100 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 1.6e-16 89.7 110 49.1
CSS0035646 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 2.1e-16 89.4 104 51.0
CSS0046266 Camellia sinensis var. sinensis HOM05D001027 ORTHO05D000844 2.1e-16 89.4 104 51.0
Lj3g0001508 Lotus japonicus HOM05D001027 ORTHO05D000844 2.1e-16 89.4 108 44.4
Potri.006G147400 Populus trichocarpa HOM05D001027 ORTHO05D000844 2.1e-16 89.4 102 54.9
Prupe.3G045300 Prunus persica HOM05D001027 ORTHO05D000844 2.1e-16 89.4 105 46.7
Lj5g0001171 Lotus japonicus HOM05D001027 ORTHO05D000844 2.7e-16 89.0 108 43.5
Sabra18G0058800 Salix brachista HOM05D001027 ORTHO05D000844 3.6e-16 88.6 103 52.4
SabraUnG0005200 Salix brachista HOM05D001027 ORTHO05D000844 3.6e-16 88.6 103 52.4
Hund25996 Selenicereus undatus HOM05D001027 ORTHO05D000844 6.1e-16 87.8 104 51.9
VMungo0331G0967 Vigna mungo HOM05D001027 ORTHO05D000844 6.1e-16 87.8 112 46.4
PGR119G1880 Punica granatum HOM05D001027 ORTHO05D000844 8.0e-16 87.4 100 52.0
Duzib150G0469 Durio zibethinus HOM05D001027 ORTHO05D000844 1.0e-15 87.0 95 56.8
SalBow6G3916 Salvia bowleyana HOM05D001027 ORTHO05D000844 1.4e-15 86.7 88 54.5
Cfa003055 Carpinus fangiana HOM05D001027 ORTHO05D000844 4.0e-15 85.1 102 48.0
Sabra06G0116400 Salix brachista HOM05D001027 ORTHO05D000844 5.2e-15 84.7 94 57.4
Gohir.D07G012300 Gossypium hirsutum HOM05D001027 ORTHO05D000844 6.8e-15 84.3 103 50.5
Eucgr.C00865 Eucalyptus grandis HOM05D001027 ORTHO05D000844 8.8e-15 84.0 108 49.1
Nitab4.5_0005003g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 8.8e-15 84.0 95 51.6
CsaV3_3G043700 Cucumis sativus L. HOM05D000250 ORTHO05D000625 1.5e-14 83.2 102 51.0
CiPaw.04G147800 Carya illinoinensis HOM05D001027 ORTHO05D000844 2.6e-14 82.4 102 46.1
Atru.chr1.3799 Acer truncatum HOM05D001027 ORTHO05D006918 4.4e-14 81.6 96 52.1
Nitab4.5_0009641g0020 Nicotiana tabacum HOM05D001027 ORTHO05D000844 4.4e-14 81.6 95 51.6
Phvul.010G136000 Phaseolus vulgaris HOM05D001027 ORTHO05D000844 4.4e-14 81.6 114 43.9
Gohir.A07G012500 Gossypium hirsutum HOM05D001027 ORTHO05D000844 5.7e-14 81.3 103 48.5
Peaxi162Scf00207g01353 Petunia axillaris HOM05D001027 ORTHO05D000844 5.7e-14 81.3 63 69.8
CDE06G2372 Ceratophyllum demersum HOM05D001027 ORTHO05D000844 9.8e-14 80.5 106 44.3
MBI01_g16596_MAGBIO Magnolia biondii HOM05D001027 ORTHO05D000844 1.3e-13 80.1 104 49.0
MD09G1188600 Malus domestica HOM05D001027 ORTHO05D000844 3.7e-13 78.6 103 44.7
Lj9A520T93 Lonicera japonica HOM05D001027 ORTHO05D000844 6.3e-13 77.8 99 49.5
PSO832G4508 Papaver somniferum HOM05D001027 ORTHO05D000844 6.3e-13 77.8 102 45.1
RcHm_v2.0_Chr2g0093821 Rosa chinensis HOM05D001027 ORTHO05D000844 8.3e-13 77.4 125 40.8
Sc18g0002280 Simmondsia chinensis HOM05D001027 ORTHO05D000844 8.3e-13 77.4 100 46.0
TWI36G1153 Tripterygium wilfordii HOM05D001027 ORTHO05D000844 8.3e-13 77.4 103 46.6
Prupe.7G205700 Prunus persica HOM05D001027 ORTHO05D000844 1.1e-12 77.0 102 44.1
SGA_v2.0_scaffold21G09416 Striga asiatica HOM05D001027 ORTHO05D000844 1.1e-12 77.0 101 42.6
Cc04_g01670 Coffea canephora HOM05D001027 ORTHO05D000844 1.8e-12 76.3 104 45.2
COL.COLO4_18172 Corchorus olitorius HOM05D001027 ORTHO05D000844 1.8e-12 76.3 101 48.5
FvH4_1g07940 Fragaria vesca HOM05D001027 ORTHO05D000844 1.8e-12 76.3 63 61.9
FAN19G0620 Fragaria x ananassa HOM05D001027 ORTHO05D000844 1.8e-12 76.3 63 61.9
FAN23G0537 Fragaria x ananassa HOM05D001027 ORTHO05D000844 1.8e-12 76.3 63 61.9
FAN26G1071 Fragaria x ananassa HOM05D001027 ORTHO05D000844 2.4e-12 75.9 63 61.9
FAN26G3240 Fragaria x ananassa HOM05D001027 ORTHO05D000844 2.4e-12 75.9 63 61.9
Lalb_Chr14g0372681 Lupinus albus HOM05D001027 ORTHO05D000844 2.4e-12 75.9 104 41.3
Cfa003557 Carpinus fangiana HOM05D001027 ORTHO05D000844 3.1e-12 75.5 104 42.3
VMungo0331G0759 Vigna mungo HOM05D001027 ORTHO05D000844 4.1e-12 75.1 114 39.5
PSO063G4045 Papaver somniferum HOM05D001027 ORTHO05D000844 7.0e-12 74.3 102 43.1
Sed0025250 Sechium edule HOM05D001027 ORTHO05D000844 1.2e-11 73.6 104 44.2
MD02G1083400 Malus domestica HOM05D001027 ORTHO05D000844 2.0e-11 72.8 105 41.0
SGA_v2.0_scaffold23G10037 Striga asiatica HOM05D006688 ORTHO05D008550 2.0e-11 72.8 108 39.8
Lsat_1_v5_gn_5_143181 Lactuca sativa HOM05D001027 ORTHO05D000844 3.5e-11 72.0 100 42.0
Ca_23343_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 4.5e-11 71.6 100 41.0
Gorai.001G013000 Gossypium raimondii HOM05D001027 ORTHO05D000844 4.5e-11 71.6 96 46.9
Lalb_Chr24g0396531 Lupinus albus HOM05D001027 ORTHO05D000844 4.5e-11 71.6 104 38.5
TPR.G7889 Trifolium pratense HOM05D000208 ORTHO05D000130 4.5e-11 71.6 98 43.9
AUR62033931 Chenopodium quinoa HOM05D001027 ORTHO05D000844 7.7e-11 70.9 103 40.8
HPP92_006477 Vanilla planifolia HOM05D001027 ORTHO05D000844 7.7e-11 70.9 60 56.7
THA.LOC104815633 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 2.3e-10 69.3 106 42.5
PSO832G0706 Papaver somniferum HOM05D001027 ORTHO05D000844 3.8e-10 68.6 102 39.2
THA.LOC104813296 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 5.0e-10 68.2 107 44.9
SGA_v2.0_scaffold4G02052 Striga asiatica HOM05D001027 ORTHO05D000844 6.6e-10 67.8 95 44.2
COL.COLO4_11825 Corchorus olitorius HOM05D051575 ORTHO05D000844 1.1e-09 67.0 85 49.4
Sp5g27800 Schrenkiella parvula HOM05D001027 ORTHO05D000844 1.1e-09 67.0 103 42.7
FAN28G1607 Fragaria x ananassa HOM05D000250 ORTHO05D000625 1.5e-09 66.6 58 60.3
Psat4g184920 Pisum sativum HOM05D001027 ORTHO05D000844 1.5e-09 66.6 99 39.4
RcHm_v2.0_Chr2g0144441 Rosa chinensis HOM05D001027 ORTHO05D000844 1.5e-09 66.6 90 46.7
PSO173G0140 Papaver somniferum HOM05D001027 ORTHO05D000844 1.9e-09 66.2 104 40.4
Sed0000203 Sechium edule HOM05D001027 ORTHO05D000844 1.9e-09 66.2 105 41.9
Aa31LG4G3090 Aethionema arabicum HOM05D001027 ORTHO05D000844 2.5e-09 65.9 107 39.3
THA.LOC104808049 Tarenaya hassleriana HOM05D001027 ORTHO05D000844 2.5e-09 65.9 63 57.1
Cpa.g.sc106.31 Carica papaya HOM05D001027 ORTHO05D000844 3.3e-09 65.5 96 46.9
AUR62029031 Chenopodium quinoa HOM05D001027 ORTHO05D000844 7.2e-09 64.3 96 41.7
Ah.13g077930 Amaranthus hybridus HOM05D001027 ORTHO05D000844 1.6e-08 63.2 68 48.5
MSTRG.9507 Avicennia marina HOM05D001027 ORTHO05D000844 2.1e-08 62.8 92 47.8
CARHR065660 Cardamine hirsuta HOM05D001027 ORTHO05D000844 2.8e-08 62.4 85 48.2
MSTRG.4780 Avicennia marina HOM05D001027 ORTHO05D000844 3.6e-08 62.0 95 46.3
Carub.0002s1959 Capsella rubella HOM05D001027 ORTHO05D000844 3.6e-08 62.0 105 39.0
TPR.G6579 Trifolium pratense HOM05D001027 ORTHO05D000844 3.6e-08 62.0 102 38.2
EL10Ac8g19173 Beta vulgaris HOM05D001027 ORTHO05D000844 6.1e-08 61.2 105 40.0
FvH4_6g34130 Fragaria vesca HOM05D001027 ORTHO05D000844 6.1e-08 61.2 89 41.6
FAN14G2106 Fragaria x ananassa HOM05D001027 ORTHO05D000844 6.1e-08 61.2 89 41.6
Lj1g0021826 Lotus japonicus HOM05D001027 ORTHO05D000844 8.0e-08 60.8 46 56.5
unitig_699.g19292 Utricularia gibba HOM05D001606 ORTHO05D002266 1.0e-07 60.5 85 45.9
MSTRG.22565 Avicennia marina HOM05D001027 ORTHO05D000844 1.4e-07 60.1 78 52.6
AT1G17520 Arabidopsis thaliana HOM05D001027 ORTHO05D000844 1.8e-07 59.7 103 35.9
unitig_32.g11570 Utricularia gibba HOM05D001027 ORTHO05D000844 1.8e-07 59.7 103 35.9
Peaxi162Scf00038g01737 Petunia axillaris HOM05D001027 ORTHO05D000844 2.3e-07 59.3 95 43.2
Thhalv10018950m.g Eutrema salsugineum HOM05D001027 ORTHO05D000844 4.0e-07 58.5 106 35.8
Medtr2g099610 Medicago truncatula HOM05D001027 ORTHO05D000844 4.0e-07 58.5 106 38.7
Oeu009687.1 Olea europaea HOM05D001027 ORTHO05D000844 4.0e-07 58.5 94 39.4
Psat5g289920 Pisum sativum HOM05D001027 ORTHO05D000844 4.0e-07 58.5 102 35.3
Ca_01220_v3 Cicer arietinum L. HOM05D001027 ORTHO05D000844 5.2e-07 58.2 100 37.0
Medtr8g018410 Medicago truncatula HOM05D001027 ORTHO05D000844 5.2e-07 58.2 109 34.9
Zm00001eb155280 Zea mays HOM05D001027 ORTHO05D000844 5.2e-07 58.2 109 38.5
Eucgr.J02841 Eucalyptus grandis HOM05D001027 ORTHO05D000844 1.2e-06 57.0 106 37.7
MD15G1211100 Malus domestica HOM05D001027 ORTHO05D000844 1.2e-06 57.0 63 42.9
Migut.L01532 Erythranthe guttata HOM05D001027 ORTHO05D000844 2.0e-06 56.2 59 52.5
Os01g0708000 Oryza sativa ssp. japonica HOM05D001027 ORTHO05D000844 3.4e-06 55.5 108 36.1
Aa31LG7G2330 Aethionema arabicum HOM05D001027 ORTHO05D000844 4.4e-06 55.1 98 36.7
FAN09G2071 Fragaria x ananassa HOM05D000250 ORTHO05D000625 4.4e-06 55.1 84 39.3
AL2G32420 Arabidopsis lyrata HOM05D001027 ORTHO05D000844 5.7e-06 54.7 103 41.7
Oeu039945.2 Olea europaea HOM05D001027 ORTHO05D000844 5.7e-06 54.7 98 35.7
Sopen03g040660 Solanum pennellii HOM05D001027 ORTHO05D000844 5.7e-06 54.7 62 50.0
PGSC0003DMG400002489 Solanum tuberosum HOM05D001027 ORTHO05D000844 9.8e-06 53.9 62 48.4
Zm00001eb361200 Zea mays HOM05D001027 ORTHO05D000844 9.8e-06 53.9 106 35.8


User provided reference genes

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