Gene: Sopen03g040660

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g040660
  • Transcript Identifier Sopen03g040660.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 74470230-74476899 : negative

Gene Family Information

  • ID HOM05D001027
  • #Genes/#Species 591/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g040660.1

Descriptions

  • Description Homeodomain-like/winged-helix DNA-binding family protein | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: nucleosome assembly, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , SANT, DNA-binding , Myb, DNA-binding , Homeodomain-like , Histone H1/H5 , Homeodomain-related , HTH transcriptional regulator, Myb-type, DNA-binding | BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006334
IEA
InterPronucleosome assembly

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003677
IEA
InterProDNA binding
GO:0003691
IEA
InterProdouble-stranded telomeric DNA binding
GO:0000976
ISO
PLAZA Integrative Orthologytranscription cis-regulatory region binding AT1G17520

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000786
IEA
InterPronucleosome
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT1G72740

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005818 Linker histone H1/H5, domain H15
IPR044597 Single myb histone 1-6
IPR009057 Homeobox-like domain superfamily
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR001005 SANT/Myb domain
IPR017930 Myb domain
IPR036390 Winged helix DNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated