Gene: Sopen03g040660
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g040660
- Transcript Identifier Sopen03g040660.1
- Gene Type Coding gene
- Location Spenn-ch03 : 74470230-74476899 : negative
Gene Family Information
- ID HOM05D001027
- #Genes/#Species 591/99
- Phylogenetic origin
- ID ORTHO05D000844
- #Genes/#Species 587/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen03g040660.1
Descriptions
- Description Homeodomain-like/winged-helix DNA-binding family protein | FUNCTIONS IN: sequence-specific DNA binding transcription factor activity | INVOLVED IN: nucleosome assembly, regulation of transcription | LOCATED IN: nucleus | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding , SANT, DNA-binding , Myb, DNA-binding , Homeodomain-like , Histone H1/H5 , Homeodomain-related , HTH transcriptional regulator, Myb-type, DNA-binding | BEST Arabidopsis thaliana protein match is: Homeodomain-like/winged-helix DNA-binding family protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006334 | IEA | InterPro | nucleosome assembly |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003677 | IEA | InterPro | DNA binding | |
GO:0003691 | IEA | InterPro | double-stranded telomeric DNA binding | |
GO:0000976 | ISO | PLAZA Integrative Orthology | transcription cis-regulatory region binding | AT1G17520 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0000786 | IEA | InterPro | nucleosome | |
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G72740 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
35.1 | not assigned.annotated |