Gene: FAN09G2071
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN09G2071
- Transcript Identifier FAN09G2071.1
- Gene Type Coding gene
- Location Fvb6-2 : 2780537-2787154 : positive
Gene Family Information
- ID HOM05D000250
- #Genes/#Species 1697/100
- Phylogenetic origin
- ID ORTHO05D000625
- #Genes/#Species 728/100
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb6-2-augustus-gene-27.53.v1.0.a1
- pacid 50470604
Descriptions
- Description PTHR24031//PTHR24031:SF322 - RNA HELICASE // SUBFAMILY NOT NAMED
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006334 | IEA | InterPro | nucleosome assembly | |
| GO:0016070 | ISO | PLAZA Integrative Orthology | RNA metabolic process | Solyc06g062800.4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G13920 |
| GO:0003724 | ISO | PLAZA Integrative Orthology | RNA helicase activity | Solyc06g062800.4 |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT3G13920 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000786 | IEA | InterPro | nucleosome | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | Os02g0146600 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | Os02g0146600 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G72730 |
| GO:0009505 | ISO | PLAZA Integrative Orthology | plant-type cell wall | AT1G72730 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT1G72730 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR014001 | Helicase superfamily 1/2, ATP-binding domain |
| IPR017930 | Myb domain |
| IPR011545 | DEAD/DEAH box helicase domain |
| IPR005818 | Linker histone H1/H5, domain H15 |
| IPR001650 | Helicase, C-terminal |
| IPR009057 | Homeobox-like domain superfamily |
| IPR036390 | Winged helix DNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 17.4.2.1 | Protein biosynthesis.translation initiation.mRNA loading.mRNA unwinding factor (eIF4A) |