Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g026990.1 Solanum lycopersicum HOM05D000242 ORTHO05D000700 1.8e-32 141.7 62 100.0
Solyc10g055820.3 Solanum lycopersicum HOM05D000242 ORTHO05D000700 4.4e-10 67.4 37 75.7
PGSC0003DMG400040317 Solanum tuberosum HOM05D000242 ORTHO05D000700 5.8e-10 67.0 35 80.0
CAN.G996.25 Capsicum annuum HOM05D000242 ORTHO05D000700 7.5e-10 66.6 37 75.7
CAN.G1231.6 Capsicum annuum HOM05D000242 ORTHO05D000700 1.3e-09 65.9 37 75.7
Solyc10g074390.1 Solanum lycopersicum HOM05D000242 ORTHO05D000700 3.7e-09 64.3 35 77.1
Sopen10g026920 Solanum pennellii HOM05D000242 ORTHO05D000700 6.4e-09 63.5 35 77.1
HanXRQChr09g0276701 Helianthus annuus HOM05D000242 ORTHO05D000700 8.3e-09 63.2 37 73.0
Glyma.02G042500 Glycine max HOM05D000242 ORTHO05D000700 1.1e-08 62.8 37 64.9
Solyc10g055810.2 Solanum lycopersicum HOM05D000242 ORTHO05D000700 1.4e-08 62.4 37 70.3
Solyc10g074380.3 Solanum lycopersicum HOM05D000242 ORTHO05D000700 1.4e-08 62.4 35 74.3
Medtr8g074335 Medicago truncatula HOM05D000242 ORTHO05D000700 1.9e-08 62.0 37 70.3
Sopen10g025620 Solanum pennellii HOM05D000242 ORTHO05D000700 1.9e-08 62.0 37 70.3
Sopen10g025630 Solanum pennellii HOM05D000242 ORTHO05D000700 1.9e-08 62.0 37 70.3
PGSC0003DMG400026854 Solanum tuberosum HOM05D000242 ORTHO05D000700 1.9e-08 62.0 37 70.3
Nitab4.5_0002257g0170 Nicotiana tabacum HOM05D000242 ORTHO05D000700 2.4e-08 61.6 50 58.0
Peaxi162Scf00875g00019 Petunia axillaris HOM05D000242 ORTHO05D000700 2.4e-08 61.6 37 67.6
Rhsim05G0049600 Rhododendron simsii HOM05D000242 ORTHO05D000700 2.4e-08 61.6 37 64.9
PGSC0003DMG400008796 Solanum tuberosum HOM05D000242 ORTHO05D000700 2.4e-08 61.6 37 67.6
TPR.G23921 Trifolium pratense HOM05D000242 ORTHO05D000700 2.4e-08 61.6 37 64.9
arahy.Tifrunner.gnm1.ann1.2J0KXT Arachis hypogaea HOM05D000242 ORTHO05D000700 3.2e-08 61.2 37 64.9
HanXRQChr09g0276721 Helianthus annuus HOM05D000242 ORTHO05D000700 3.2e-08 61.2 34 76.5
Medtr8g074330 Medicago truncatula HOM05D000242 ORTHO05D000700 3.2e-08 61.2 37 64.9
Nitab4.5_0001274g0010 Nicotiana tabacum HOM05D000242 ORTHO05D000700 3.2e-08 61.2 37 67.6
Rhsim05G0049500 Rhododendron simsii HOM05D000242 ORTHO05D000700 3.2e-08 61.2 39 59.0
Hma1.2p1_0032F.1_g018930 Hydrangea macrophylla HOM05D000242 ORTHO05D000700 4.1e-08 60.8 35 68.6
Solyc00g500347.1 Solanum lycopersicum HOM05D000242 ORTHO05D000700 4.1e-08 60.8 35 74.3
Solyc10g068350.1 Solanum lycopersicum HOM05D000242 ORTHO05D000700 4.1e-08 60.8 35 74.3
Sopen00g005530 Solanum pennellii HOM05D000242 ORTHO05D000700 4.1e-08 60.8 35 74.3
TPR.G35183 Trifolium pratense HOM05D000242 ORTHO05D000700 4.1e-08 60.8 35 65.7
arahy.Tifrunner.gnm1.ann1.AK92GL Arachis hypogaea HOM05D000242 ORTHO05D000700 5.4e-08 60.5 39 61.5
arahy.Tifrunner.gnm1.ann1.DTFP0P Arachis hypogaea HOM05D000242 ORTHO05D000700 5.4e-08 60.5 39 61.5
Nitab4.5_0005898g0010 Nicotiana tabacum HOM05D000242 ORTHO05D000700 5.4e-08 60.5 34 73.5
Nitab4.5_0007206g0030 Nicotiana tabacum HOM05D000242 ORTHO05D000700 5.4e-08 60.5 34 73.5
Solyc10g055780.1 Solanum lycopersicum HOM05D000242 ORTHO05D000700 5.4e-08 60.5 35 68.6
Solyc10g074440.2 Solanum lycopersicum HOM05D000242 ORTHO05D000700 5.4e-08 60.5 35 74.3
Sopen10g025610 Solanum pennellii HOM05D000242 ORTHO05D000700 5.4e-08 60.5 35 68.6
THA.LOC104824946 Tarenaya hassleriana HOM05D000242 ORTHO05D000700 5.4e-08 60.5 40 65.0
Solyc10g055800.2 Solanum lycopersicum HOM05D000242 ORTHO05D000700 7.1e-08 60.1 35 71.4
PGSC0003DMG400026855 Solanum tuberosum HOM05D000242 ORTHO05D000700 7.1e-08 60.1 35 71.4
arahy.Tifrunner.gnm1.ann1.BYM6W0 Arachis hypogaea HOM05D000242 ORTHO05D000700 9.2e-08 59.7 37 62.2
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 9.2e-08 59.7 37 62.2
Nitab4.5_0000009g0510 Nicotiana tabacum HOM05D000242 ORTHO05D000700 9.2e-08 59.7 37 64.9
Peaxi162Scf00078g01219 Petunia axillaris HOM05D000242 ORTHO05D000700 9.2e-08 59.7 37 64.9
Psat4g103520 Pisum sativum HOM05D000242 ORTHO05D000700 9.2e-08 59.7 37 62.2
Solyc10g074360.1 Solanum lycopersicum HOM05D000242 ORTHO05D000700 1.2e-07 59.3 35 71.4
BcaC09g48249 Brassica carinata HOM05D000242 ORTHO05D000700 2.1e-07 58.5 38 65.8
BNapus_Darmor_BZH_scaffold_149p00040 Brassica napus HOM05D000242 ORTHO05D000700 2.1e-07 58.5 38 65.8
BraA01t04131Z Brassica rapa HOM05D000242 ORTHO05D000700 2.1e-07 58.5 38 65.8
Ca_22406_v3 Cicer arietinum L. HOM05D000242 ORTHO05D000700 2.1e-07 58.5 37 59.5
HanXRQChr09g0276691 Helianthus annuus HOM05D000242 ORTHO05D000700 2.1e-07 58.5 34 70.6
A05p36960 Brassica napus HOM05D000242 ORTHO05D000700 2.7e-07 58.2 42 61.9
MD02G1120200 Malus domestica HOM05D000242 ORTHO05D000700 2.7e-07 58.2 34 73.5
RcHm_v2.0_Chr2g0097671 Rosa chinensis HOM05D000242 ORTHO05D000700 2.7e-07 58.2 37 67.6
Manes.04G067520 Manihot esculenta HOM05D000242 ORTHO05D000700 3.5e-07 57.8 41 63.4
Peaxi162Scf00274g00746 Petunia axillaris HOM05D000242 ORTHO05D000700 3.5e-07 57.8 37 64.9
QL02p099632 Quercus lobata HOM05D000242 ORTHO05D000700 3.5e-07 57.8 38 60.5
Sopen10g025650 Solanum pennellii HOM05D000242 ORTHO05D000700 3.5e-07 57.8 35 71.4
BolC5t34207H Brassica oleracea HOM05D000242 ORTHO05D000700 4.6e-07 57.4 42 59.5
Haze_01772 Corylus avellana HOM05D000242 ORTHO05D000700 4.6e-07 57.4 37 64.9
Lsat_1_v5_gn_8_111541 Lactuca sativa HOM05D000242 ORTHO05D000700 4.6e-07 57.4 31 77.4
Peaxi162Scf01261g00011 Petunia axillaris HOM05D000242 ORTHO05D000700 4.6e-07 57.4 34 70.6
vmacro17279 Vaccinium macrocarpon HOM05D000242 ORTHO05D000700 4.6e-07 57.4 35 60.0
FvH4_1g10641 Fragaria vesca HOM05D000242 ORTHO05D000700 6.0e-07 57.0 34 70.6
FvH4_1g10643 Fragaria vesca HOM05D000242 ORTHO05D000700 6.0e-07 57.0 34 70.6
FAN19G1187 Fragaria x ananassa HOM05D000242 ORTHO05D000700 6.0e-07 57.0 34 70.6
FAN28G2400 Fragaria x ananassa HOM05D000242 ORTHO05D000700 6.0e-07 57.0 37 67.6
MD02G1120300 Malus domestica HOM05D000242 ORTHO05D000700 6.0e-07 57.0 34 73.5
SEGI_03325 Sequoiadendron giganteum HOM05D000242 ORTHO05D000700 6.0e-07 57.0 38 63.2
CSS0000517 Camellia sinensis var. sinensis HOM05D000242 ORTHO05D000700 7.8e-07 56.6 37 62.2
CSS0049804 Camellia sinensis var. sinensis HOM05D000242 ORTHO05D000700 7.8e-07 56.6 37 62.2
FvH4_1g10660 Fragaria vesca HOM05D000242 ORTHO05D000700 7.8e-07 56.6 37 64.9
Hma1.2p1_0674F.1_g201570 Hydrangea macrophylla HOM05D000242 ORTHO05D000700 7.8e-07 56.6 37 62.2
BcaC05g29261 Brassica carinata HOM05D000242 ORTHO05D000700 1.0e-06 56.2 42 59.5
C05p55410 Brassica napus HOM05D000242 ORTHO05D000700 1.0e-06 56.2 42 59.5
BraA05t22496Z Brassica rapa HOM05D000242 ORTHO05D000700 1.0e-06 56.2 42 59.5
Haze_01774 Corylus avellana HOM05D000242 ORTHO05D000700 1.0e-06 56.2 37 64.9
Glyma.16G119200 Glycine max HOM05D000242 ORTHO05D000700 1.0e-06 56.2 34 64.7
Solyc02g061770.4 Solanum lycopersicum HOM05D000242 ORTHO05D000700 1.0e-06 56.2 39 61.5
Sopen02g012810 Solanum pennellii HOM05D000242 ORTHO05D000700 1.0e-06 56.2 39 61.5
TPR.G30465 Trifolium pratense HOM05D000242 ORTHO05D000700 1.0e-06 56.2 40 60.0
Actinidia32021 Actinidia chinensis HOM05D000242 ORTHO05D000700 1.3e-06 55.8 37 56.8
MELO3C007961.2 Cucumis melo HOM05D000242 ORTHO05D000700 1.3e-06 55.8 37 59.5
CsaV3_6G047720 Cucumis sativus L. HOM05D000242 ORTHO05D000700 1.3e-06 55.8 37 59.5
Thhalv10021149m.g Eutrema salsugineum HOM05D000242 ORTHO05D000700 1.3e-06 55.8 42 57.1
Gohir.D11G170951 Gossypium hirsutum HOM05D000242 ORTHO05D000700 1.3e-06 55.8 35 68.6
SEGI_16241 Sequoiadendron giganteum HOM05D000242 ORTHO05D000700 1.3e-06 55.8 38 60.5
CiPaw.05G050500 Carya illinoinensis HOM05D000242 ORTHO05D000700 1.7e-06 55.5 34 67.6
FAN23G1022 Fragaria x ananassa HOM05D000242 ORTHO05D000700 1.7e-06 55.5 34 70.6
Gohir.D11G177500 Gossypium hirsutum HOM05D000242 ORTHO05D000700 1.7e-06 55.5 34 64.7
Nitab4.5_0001581g0010 Nicotiana tabacum HOM05D000242 ORTHO05D000700 1.7e-06 55.5 39 64.1
SMO174G0181 Selaginella moellendorffii HOM05D000242 ORTHO05D000700 1.7e-06 55.5 34 61.8
SMO296G0034 Selaginella moellendorffii HOM05D000242 ORTHO05D000700 1.7e-06 55.5 34 61.8
PGSC0003DMG400008673 Solanum tuberosum HOM05D000242 ORTHO05D000700 1.7e-06 55.5 39 61.5
TAR099G0003 Trochodendron aralioides HOM05D000242 ORTHO05D000700 1.7e-06 55.5 37 62.2
TAR628G0983 Trochodendron aralioides HOM05D000242 ORTHO05D000700 1.7e-06 55.5 37 62.2
CsaV3_6G047730 Cucumis sativus L. HOM05D000242 ORTHO05D000700 2.3e-06 55.1 37 56.8
Dinv41891 Davidia involucrata HOM05D000242 ORTHO05D000700 2.3e-06 55.1 35 65.7
MBI08_g04320_MAGBIO Magnolia biondii HOM05D000242 ORTHO05D000700 2.3e-06 55.1 37 62.2
Nitab4.5_0003207g0080 Nicotiana tabacum HOM05D000242 ORTHO05D000700 2.3e-06 55.1 31 71.0
Thecc.01G008200 Theobroma cacao HOM05D000242 ORTHO05D000700 2.3e-06 55.1 34 67.6
ATR0661G037 Amborella trichopoda HOM05D000242 ORTHO05D000700 3.0e-06 54.7 55 43.6
BcaB06g25534 Brassica carinata HOM05D000242 ORTHO05D000700 3.0e-06 54.7 34 67.6
C01p52700 Brassica napus HOM05D000242 ORTHO05D000700 3.0e-06 54.7 38 63.2
BolC1t05207H Brassica oleracea HOM05D000242 ORTHO05D000700 3.0e-06 54.7 38 63.2
Cfa023498 Carpinus fangiana HOM05D000242 ORTHO05D000700 3.0e-06 54.7 37 62.2
ClCG01G020770 Citrullus lanatus HOM05D000242 ORTHO05D000700 3.0e-06 54.7 43 53.5
Sabra04G0122700 Salix brachista HOM05D000242 ORTHO05D000700 3.0e-06 54.7 41 58.5
Sed0006062 Sechium edule HOM05D000242 ORTHO05D000700 3.0e-06 54.7 37 59.5
Aa31LG3G150 Aethionema arabicum HOM05D000242 ORTHO05D000700 3.9e-06 54.3 37 59.5
Cfa014933 Carpinus fangiana HOM05D000242 ORTHO05D000700 3.9e-06 54.3 37 62.2
Haze_01770 Corylus avellana HOM05D000242 ORTHO05D000700 3.9e-06 54.3 37 62.2
Haze_01771 Corylus avellana HOM05D000242 ORTHO05D000700 3.9e-06 54.3 37 62.2
DCAR_006241 Daucus carota HOM05D000242 ORTHO05D000700 3.9e-06 54.3 34 64.7
DCAR_015207 Daucus carota HOM05D000242 ORTHO05D000700 3.9e-06 54.3 31 71.0
FvH4_1g10661 Fragaria vesca HOM05D000242 ORTHO05D000700 3.9e-06 54.3 37 64.9
FAN19G1568 Fragaria x ananassa HOM05D000242 ORTHO05D000700 3.9e-06 54.3 37 64.9
FAN26G3246 Fragaria x ananassa HOM05D000242 ORTHO05D000700 3.9e-06 54.3 34 67.6
Manes.04G067900 Manihot esculenta HOM05D000242 ORTHO05D000700 3.9e-06 54.3 40 60.0
Nitab4.5_0004103g0030 Nicotiana tabacum HOM05D000242 ORTHO05D000700 3.9e-06 54.3 37 62.2
Prupe.7G178500 Prunus persica HOM05D000242 ORTHO05D000700 3.9e-06 54.3 34 70.6
TAR099G0002 Trochodendron aralioides HOM05D000242 ORTHO05D000700 3.9e-06 54.3 31 71.0
AT3G12500 Arabidopsis thaliana HOM05D000242 ORTHO05D000700 5.1e-06 53.9 34 64.7
BcaB04g21074 Brassica carinata HOM05D000242 ORTHO05D000700 5.1e-06 53.9 37 62.2
Carub.0003s1183 Capsella rubella HOM05D000242 ORTHO05D000700 5.1e-06 53.9 34 64.7
Cfa005501 Carpinus fangiana HOM05D000242 ORTHO05D000700 5.1e-06 53.9 37 62.2
Haze_01799 Corylus avellana HOM05D000242 ORTHO05D000700 5.1e-06 53.9 37 54.1
Gohir.D01G164000 Gossypium hirsutum HOM05D000242 ORTHO05D000700 5.1e-06 53.9 31 71.0
Gorai.002G203600 Gossypium raimondii HOM05D000242 ORTHO05D000700 5.1e-06 53.9 31 71.0
Hma1.2p1_0552F.1_g177590 Hydrangea macrophylla HOM05D000242 ORTHO05D000700 5.1e-06 53.9 34 61.8
MD15G1234400 Malus domestica HOM05D000242 ORTHO05D000700 5.1e-06 53.9 34 70.6
Nitab4.5_0000188g0340 Nicotiana tabacum HOM05D000242 ORTHO05D000700 5.1e-06 53.9 31 64.5
Os06g0726200 Oryza sativa ssp. japonica HOM05D000242 ORTHO05D000700 5.1e-06 53.9 37 62.2
AagrBONN_evm.TU.Sc2ySwM_228.5631 Anthoceros agrestis HOM05D000242 ORTHO05D000700 6.6e-06 53.5 32 65.6
arahy.Tifrunner.gnm1.ann1.62YWNW Arachis hypogaea HOM05D000242 ORTHO05D000700 6.6e-06 53.5 37 59.5
arahy.Tifrunner.gnm1.ann1.A4EZ90 Arachis hypogaea HOM05D000242 ORTHO05D000700 6.6e-06 53.5 37 59.5
CAN.G890.60 Capsicum annuum HOM05D000242 ORTHO05D000700 6.6e-06 53.5 31 64.5
DCAR_006242 Daucus carota HOM05D000242 ORTHO05D000700 6.6e-06 53.5 34 61.8
Gohir.A11G170400 Gossypium hirsutum HOM05D000242 ORTHO05D000700 6.6e-06 53.5 34 64.7
Lj4g0000585 Lotus japonicus HOM05D000242 ORTHO05D000700 6.6e-06 53.5 31 67.7
Phvul.003G268500 Phaseolus vulgaris HOM05D000242 ORTHO05D000700 6.6e-06 53.5 34 61.8
RcHm_v2.0_Chr2g0097821 Rosa chinensis HOM05D000242 ORTHO05D000700 6.6e-06 53.5 37 64.9
AL3G24130 Arabidopsis lyrata HOM05D000242 ORTHO05D000700 8.6e-06 53.1 34 64.7
COL.COLO4_22526 Corchorus olitorius HOM05D000242 ORTHO05D000700 8.6e-06 53.1 34 67.6
MELO3C007962.2 Cucumis melo HOM05D000242 ORTHO05D000700 8.6e-06 53.1 37 56.8
Dinv41892 Davidia involucrata HOM05D000242 ORTHO05D000700 8.6e-06 53.1 35 60.0
Duzib132G0831 Durio zibethinus HOM05D000242 ORTHO05D000700 8.6e-06 53.1 31 71.0
FvH4_1g10640 Fragaria vesca HOM05D000242 ORTHO05D000700 8.6e-06 53.1 34 67.6
FvH4_1g10642 Fragaria vesca HOM05D000242 ORTHO05D000700 8.6e-06 53.1 34 67.6
FvH4_1g10650 Fragaria vesca HOM05D000242 ORTHO05D000700 8.6e-06 53.1 34 67.6
MBI08_g04933_MAGBIO Magnolia biondii HOM05D000242 ORTHO05D000700 8.6e-06 53.1 37 56.8
Nitab4.5_0001310g0010 Nicotiana tabacum HOM05D000242 ORTHO05D000700 8.6e-06 53.1 31 64.5
Os06g0726100 Oryza sativa ssp. japonica HOM05D000242 ORTHO05D000700 8.6e-06 53.1 37 59.5
Peaxi162Scf00274g00749 Petunia axillaris HOM05D000242 ORTHO05D000700 8.6e-06 53.1 37 59.5
Sed0008976 Sechium edule HOM05D000242 ORTHO05D000700 8.6e-06 53.1 48 52.1


User provided reference genes

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