Gene: Sopen10g025630

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen10g025630
  • Transcript Identifier Sopen10g025630.1
  • Gene Type Coding gene
  • Location Spenn-ch10 : 68368132-68369276 : negative

Gene Family Information

  • ID HOM05D000242
  • #Genes/#Species 1731/97
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen10g025630.1

Descriptions

  • Description Endochitinase 3 precursor (EC 3.2.1.14) (Fragment) - Solanum tuberosum (Potato), encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | basic chitinase (HCHIB) | FUNCTIONS IN: chitinase activity | INVOLVED IN: response to cadmium ion, defense response to fungus, jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway | LOCATED IN: plasma membrane, vacuole | EXPRESSED IN: 10 plant structures | EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage | CONTAINS InterPro DOMAIN/s: Chitin-binding, type 1, conserved site , Glycoside hydrolase, family 19 , Chitin-binding, type 1 , Glycoside hydrolase, family 19, catalytic | BEST Arabidopsis thaliana protein match is: Chitinase family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006032
IEA
InterProchitin catabolic process
GO:0016998
IEA
InterProcell wall macromolecule catabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0009871
ISO
PLAZA Integrative Orthologyjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway AT3G12500
GO:0006040
ISO
PLAZA Integrative Orthologyamino sugar metabolic process Os03g0418000
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT3G12500
GO:0050832
ISO
PLAZA Integrative Orthologydefense response to fungus AT3G12500

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008061
IEA
InterProchitin binding
GO:0004568
IEA
InterProchitinase activity
GO:0016231
ISO
PLAZA Integrative Orthologybeta-N-acetylglucosaminidase activity Os03g0418000
GO:0008843
ISO
PLAZA Integrative Orthologyendochitinase activity Os03g0418000

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G12500
GO:0005774
ISO
PLAZA Integrative Orthologyvacuolar membrane AT3G12500
GO:0005773
ISO
PLAZA Integrative Orthologyvacuole AT3G12500
GO:0005622
ISO
PLAZA Integrative Orthologyintracellular anatomical structure AT3G12500

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001002 Chitin-binding, type 1
IPR036861 Endochitinase-like superfamily
IPR000726 Glycoside hydrolase, family 19, catalytic
IPR023346 Lysozyme-like domain superfamily
IPR016283 Glycoside hydrolase, family 19
Mapman id Description
35.1 not assigned.annotated