Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g021205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.0e-36 155.2 75 100.0
CSS0028306 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 6.1e-22 107.1 72 70.8
arahy.Tifrunner.gnm1.ann1.YJD706 Arachis hypogaea HOM05D000216 ORTHO05D000634 5.9e-17 90.5 70 60.0
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 2.2e-16 88.6 73 61.6
Solyc12g062563.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 8.0e-14 80.1 41 87.8
Lsat_1_v5_gn_1_96161 Lactuca sativa HOM05D000216 ORTHO05D000634 8.8e-13 76.6 57 63.2
Lsat_1_v5_gn_8_1820 Lactuca sativa HOM05D000216 ORTHO05D000634 8.8e-13 76.6 57 63.2
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 2.0e-12 75.5 57 59.6
BolSC49t61197H Brassica oleracea HOM05D000216 ORTHO05D000634 2.8e-11 71.6 60 55.0
Sed0024913 Sechium edule HOM05D000216 ORTHO05D000634 6.3e-11 70.5 57 59.6
Sed0025165 Sechium edule HOM05D000216 ORTHO05D000634 6.3e-11 70.5 57 59.6
Medtr3g062770 Medicago truncatula HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 67.4
Medtr3g062790 Medicago truncatula HOM05D000216 ORTHO05D000634 1.4e-10 69.3 43 67.4
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 1.4e-10 69.3 43 67.4
CAN.G2141.5 Capsicum annuum HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
CAN.G481.11 Capsicum annuum HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
MELO3C027102.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
DCAR_032475 Daucus carota HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
FAN17G2339 Fragaria x ananassa HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
LjContig00318g0019842 Lotus japonicus HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
Nn082s42673 Nelumbo nucifera HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
PSO548G0054 Papaver somniferum HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
PGR111G0082 Punica granatum HOM05D000216 ORTHO05D000634 1.8e-10 68.9 41 70.7
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 3.1e-10 68.2 43 65.1
Gohir.D13G173125 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.1e-10 67.8 41 68.3
Gorai.005G167700 Gossypium raimondii HOM05D000216 ORTHO05D001131 4.1e-10 67.8 41 68.3
Potri.013G140850 Populus trichocarpa HOM05D000216 ORTHO05D000634 4.1e-10 67.8 41 68.3
Potri.019G027860 Populus trichocarpa HOM05D000216 ORTHO05D000634 4.1e-10 67.8 41 68.3
Atru.chr13.1918 Acer truncatum HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
ATCG00180 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 5.3e-10 67.4 41 68.3
BNapus_Darmor_BZH_scaffold_253p00070 Brassica napus HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
BolC7t41733H Brassica oleracea HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
BolSC37t60766H Brassica oleracea HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
BolSC44t60848H Brassica oleracea HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
BolSC45t60875H Brassica oleracea HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
BolSC45t60939H Brassica oleracea HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
BraSC140t45586Z Brassica rapa HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
BraSC151t45702Z Brassica rapa HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
BraSC58t46407Z Brassica rapa HOM05D000216 ORTHO05D000634 5.3e-10 67.4 41 68.3
CAN.G219.18 Capsicum annuum HOM05D000216 ORTHO05D000634 9.1e-10 66.6 41 70.7
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 9.1e-10 66.6 43 65.1
LjContig00489g0016986 Lotus japonicus HOM05D000216 ORTHO05D000634 1.6e-09 65.9 41 68.3
Lalb_Chr09g0335401 Lupinus albus HOM05D000216 ORTHO05D000634 1.6e-09 65.9 41 68.3
Lalb_Chr24g0400921 Lupinus albus HOM05D000216 ORTHO05D000634 1.6e-09 65.9 41 68.3
GSVIVG01000405001 Vitis vinifera HOM05D000216 ORTHO05D000634 1.6e-09 65.9 41 63.4
Hund27655 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.5e-09 64.7 41 65.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.5e-09 64.7 41 65.9
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 4.5e-09 64.3 41 65.9
Psat7g026840 Pisum sativum HOM05D000216 ORTHO05D001131 4.5e-09 64.3 41 65.9
RcHm_v2.0_Chr2g0102161 Rosa chinensis HOM05D000216 ORTHO05D000634 7.7e-09 63.5 35 74.3
HanXRQChr00c0823g0577611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-08 62.8 48 60.4
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.3e-08 62.8 48 60.4
Hund21335 Selenicereus undatus HOM05D000216 ORTHO05D000634 1.7e-08 62.4 39 64.1
Sopen07g010180 Solanum pennellii HOM05D001133 ORTHO05D000941 2.2e-08 62.0 34 88.2
HanXRQChr13g0417241 Helianthus annuus HOM05D000216 ORTHO05D001131 5.0e-08 60.8 43 62.8
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.5e-07 59.3 39 66.7
Sed0020606 Sechium edule HOM05D000216 ORTHO05D000634 1.5e-07 59.3 34 67.6
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.5e-07 59.3 37 75.7
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.5e-07 59.3 37 75.7
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.5e-07 59.3 37 75.7
Gorai.013G187400 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.9e-07 58.9 32 75.0
Solyc12g035870.3 Solanum lycopersicum HOM05D000216 ORTHO05D001131 7.2e-07 57.0 33 69.7
BraSC140t45599Z Brassica rapa HOM05D000216 ORTHO05D000634 9.4e-07 56.6 32 68.8
CAN.G648.7 Capsicum annuum HOM05D001133 ORTHO05D000941 2.1e-06 55.5 32 81.2
Migut.K00995 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.7e-06 55.1 41 58.5


User provided reference genes

Program Settings