Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g008160.3 Solanum lycopersicum HOM05D001486 ORTHO05D004921 0.0e+00 2838.5 1482 100.0
Sopen07g004030 Solanum pennellii HOM05D001486 ORTHO05D004921 0.0e+00 2814.3 1482 98.9
CAN.G149.16 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2704.9 1484 93.7
Lj3A864G85 Lonicera japonica HOM05D001486 ORTHO05D004921 0.0e+00 2343.9 1498 80.2
CAN.G601.2 Capsicum annuum HOM05D001486 ORTHO05D004921 0.0e+00 2329.3 1290 93.3
CSS0037038 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 0.0e+00 2311.2 1492 79.3
Actinidia36627 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2298.1 1497 78.6
QL03p035815 Quercus lobata HOM05D001486 ORTHO05D004921 0.0e+00 2294.2 1494 78.6
Cc04_g10510 Coffea canephora HOM05D001486 ORTHO05D004921 0.0e+00 2280.8 1495 78.5
MSTRG.2128 Avicennia marina HOM05D001486 ORTHO05D004921 0.0e+00 2272.7 1494 77.4
Migut.E00481 Erythranthe guttata HOM05D001486 ORTHO05D004921 0.0e+00 2271.9 1490 77.6
Thecc.02G292500 Theobroma cacao HOM05D001486 ORTHO05D004921 0.0e+00 2271.9 1497 77.2
Atru.chr11.925 Acer truncatum HOM05D001486 ORTHO05D004921 0.0e+00 2270.0 1497 77.2
SalBow2G2685 Salvia bowleyana HOM05D001486 ORTHO05D004921 0.0e+00 2268.0 1533 76.3
Manes.17G083900 Manihot esculenta HOM05D001486 ORTHO05D004921 0.0e+00 2265.0 1497 76.5
Actinidia12394 Actinidia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2260.7 1480 78.3
SGA_v2.0_scaffold23G10214 Striga asiatica HOM05D001486 ORTHO05D004921 0.0e+00 2258.4 1488 77.5
Potri.008G134800 Populus trichocarpa HOM05D001486 ORTHO05D004921 0.0e+00 2251.1 1496 76.1
Gohir.D02G139700 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 2247.2 1497 76.6
Gorai.005G157100 Gossypium raimondii HOM05D001486 ORTHO05D004921 0.0e+00 2247.2 1496 76.6
Prupe.1G333300 Prunus persica HOM05D001486 ORTHO05D004921 0.0e+00 2238.8 1501 75.7
TWI74G0959 Tripterygium wilfordii HOM05D001486 ORTHO05D004921 0.0e+00 2232.6 1499 76.0
Duzib268G0355 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2228.0 1497 76.2
COL.COLO4_16588 Corchorus olitorius HOM05D001486 ORTHO05D004921 0.0e+00 2227.2 1497 76.4
Ciclev10014036m.g Citrus clementina HOM05D001486 ORTHO05D004921 0.0e+00 2222.2 1497 75.3
vmacro10693 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 0.0e+00 2215.7 1553 73.9
Rhsim09G0089500 Rhododendron simsii HOM05D001486 ORTHO05D004921 0.0e+00 2206.0 1568 73.8
CANSAT01G0610 Cannabis sativa HOM05D001486 ORTHO05D004921 0.0e+00 2205.6 1492 75.2
Sabra08G0102800 Salix brachista HOM05D001486 ORTHO05D004921 0.0e+00 2199.9 1532 73.7
arahy.Tifrunner.gnm1.ann1.WZE3XK Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2191.4 1496 75.2
DCAR_007329 Daucus carota HOM05D001486 ORTHO05D004921 0.0e+00 2184.5 1493 74.3
arahy.Tifrunner.gnm1.ann1.FK3VI9 Arachis hypogaea HOM05D001486 ORTHO05D004921 0.0e+00 2182.9 1491 75.1
Duzib251G0538 Durio zibethinus HOM05D001486 ORTHO05D004921 0.0e+00 2181.4 1497 74.7
MD13G1020400 Malus domestica HOM05D001486 ORTHO05D004921 0.0e+00 2181.4 1488 74.8
Ca_17277_v3 Cicer arietinum L. HOM05D001486 ORTHO05D004921 0.0e+00 2179.1 1497 74.7
Glyma.08G045900 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2175.2 1497 74.2
TPR.G19252 Trifolium pratense HOM05D001486 ORTHO05D004921 0.0e+00 2166.7 1497 74.0
Lj4g0010019 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 2161.3 1495 74.2
Medtr8g105290 Medicago truncatula HOM05D001486 ORTHO05D004921 0.0e+00 2161.0 1497 73.7
Glyma.05G238800 Glycine max HOM05D001486 ORTHO05D004921 0.0e+00 2159.0 1496 73.4
RcHm_v2.0_Chr4g0443061 Rosa chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2157.1 1496 73.7
Nn4g24372 Nelumbo nucifera HOM05D001486 ORTHO05D004921 0.0e+00 2156.3 1453 76.1
FvH4_4g33560 Fragaria vesca HOM05D001486 ORTHO05D004921 0.0e+00 2154.8 1496 73.3
FAN22G2372 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2154.0 1496 73.2
Oeu064208.1 Olea europaea HOM05D001486 ORTHO05D004921 0.0e+00 2154.0 1497 73.5
Psat7g007960 Pisum sativum HOM05D001486 ORTHO05D004921 0.0e+00 2153.3 1496 73.7
Phvul.002G321200 Phaseolus vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2149.4 1496 73.1
VMungo0251G0466 Vigna mungo HOM05D001486 ORTHO05D004921 0.0e+00 2148.6 1497 72.9
ECA233G0786 Erigeron canadensis HOM05D001486 ORTHO05D004921 0.0e+00 2147.9 1475 75.4
PGR142G2431 Punica granatum HOM05D001486 ORTHO05D004921 0.0e+00 2147.1 1495 73.9
FAN12G0503 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2146.7 1496 73.1
FAN17G1739 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2136.7 1496 72.7
HanXRQChr08g0212501 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 2133.6 1489 74.0
Eucgr.G02106 Eucalyptus grandis HOM05D001486 ORTHO05D004921 0.0e+00 2132.1 1495 73.4
Lalb_Chr05g0222211 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2129.0 1486 73.2
Lalb_Chr09g0330891 Lupinus albus HOM05D001486 ORTHO05D004921 0.0e+00 2129.0 1496 72.6
EL10Ac3g06288 Beta vulgaris HOM05D001486 ORTHO05D004921 0.0e+00 2127.1 1493 72.9
Aqoxy3G03310 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2123.2 1480 73.2
Peaxi162Scf00376g00816 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 2123.2 1431 78.3
FAN07G1595 Fragaria x ananassa HOM05D001486 ORTHO05D004921 0.0e+00 2122.8 1491 72.7
Aqoxy7G03241 Aquilegia oxysepala HOM05D001486 ORTHO05D004921 0.0e+00 2114.7 1480 73.3
THA.LOC104823681 Tarenaya hassleriana HOM05D001486 ORTHO05D004921 0.0e+00 2090.8 1489 71.6
Sed0010499 Sechium edule HOM05D001486 ORTHO05D004921 0.0e+00 2074.7 1489 70.7
Ah.13g072990 Amaranthus hybridus HOM05D001486 ORTHO05D004921 0.0e+00 2073.1 1492 71.2
Hund13366 Selenicereus undatus HOM05D001486 ORTHO05D004921 0.0e+00 2059.6 1547 69.1
Cpa.g.sc2.194 Carica papaya HOM05D001486 ORTHO05D004921 0.0e+00 2057.0 1501 71.0
Lsat_1_v5_gn_8_46521 Lactuca sativa HOM05D001486 ORTHO05D004921 0.0e+00 2047.3 1471 72.1
AT1G14850 Arabidopsis thaliana HOM05D001486 ORTHO05D004921 0.0e+00 2043.5 1492 70.7
AL1G26870 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 0.0e+00 2040.8 1493 70.8
ClCG07G005610 Citrullus lanatus HOM05D001486 ORTHO05D004921 0.0e+00 2040.0 1485 69.8
Dinv10475 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 2039.6 1305 80.5
Thhalv10006562m.g Eutrema salsugineum HOM05D001486 ORTHO05D004921 0.0e+00 2038.1 1491 71.2
MELO3C026441.2 Cucumis melo HOM05D001486 ORTHO05D004921 0.0e+00 2036.9 1494 69.4
Carub.0001s1464 Capsella rubella HOM05D001486 ORTHO05D004921 0.0e+00 2033.8 1491 70.2
Sp1g13290 Schrenkiella parvula HOM05D001486 ORTHO05D004921 0.0e+00 2033.5 1490 70.7
CARHR015390 Cardamine hirsuta HOM05D001486 ORTHO05D004921 0.0e+00 2028.8 1492 70.2
CsaV3_5G015740 Cucumis sativus L. HOM05D001486 ORTHO05D004921 0.0e+00 2026.1 1495 69.2
BcaC05g25406 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2025.8 1488 70.4
C05p12830 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 2022.3 1498 70.2
BcaB02g06554 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2020.0 1487 70.4
BolC5t30028H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 2017.7 1498 70.0
Sc11g0004180 Simmondsia chinensis HOM05D001486 ORTHO05D004921 0.0e+00 2016.5 1495 69.6
AUR62002589 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 2016.1 1479 70.1
BcaC07g41534 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 2003.0 1490 69.7
BraA06t24267Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 2001.5 1497 69.5
C08p45360 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1999.9 1500 69.5
BraA09t41545Z Brassica rapa HOM05D001486 ORTHO05D004921 0.0e+00 1999.6 1503 69.5
BolC8t52091H Brassica oleracea HOM05D001486 ORTHO05D004921 0.0e+00 1998.4 1498 69.5
A09p61750 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1995.7 1499 69.5
BcaB08g34420 Brassica carinata HOM05D001486 ORTHO05D004921 0.0e+00 1993.8 1488 69.3
PSO782G0822 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1989.2 1489 68.6
Dinv07730 Davidia involucrata HOM05D001486 ORTHO05D004921 0.0e+00 1986.8 1276 79.6
PSO063G3102 Papaver somniferum HOM05D001486 ORTHO05D004921 0.0e+00 1977.6 1492 68.0
AUR62030013 Chenopodium quinoa HOM05D001486 ORTHO05D004921 0.0e+00 1963.7 1573 65.9
Aa31LG1G260 Aethionema arabicum HOM05D001486 ORTHO05D004921 0.0e+00 1957.2 1461 69.6
CiPaw.06G051900 Carya illinoinensis HOM05D001486 ORTHO05D004921 0.0e+00 1922.5 1304 76.2
Gohir.A03G115400 Gossypium hirsutum HOM05D001486 ORTHO05D004921 0.0e+00 1907.9 1308 75.5
ATR0753G157 Amborella trichopoda HOM05D001486 ORTHO05D004921 0.0e+00 1893.6 1504 65.7
Hma1.2p1_0277F.1_g111740 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1879.4 1383 72.5
Haze_10881 Corylus avellana HOM05D001486 ORTHO05D004921 0.0e+00 1872.1 1586 65.0
HPP92_002282 Vanilla planifolia HOM05D001486 ORTHO05D004921 0.0e+00 1851.3 1477 64.2
Hma1.2p1_0705F.1_g206910 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 0.0e+00 1838.9 1224 77.5
Os06g0305200 Oryza sativa ssp. japonica HOM05D001486 ORTHO05D004921 0.0e+00 1798.1 1481 62.2
HanXRQChr12g0363231 Helianthus annuus HOM05D001486 ORTHO05D004921 0.0e+00 1782.3 1661 59.4
A06p10890 Brassica napus HOM05D001486 ORTHO05D004921 0.0e+00 1779.6 1367 68.5
Peaxi162Scf01391g00116 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1758.8 1406 69.3
Zm00001eb009110 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1695.2 1440 60.8
Nitab4.5_0004576g0040 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1657.5 1378 68.2
Nitab4.5_0010421g0010 Nicotiana tabacum HOM05D001486 ORTHO05D004921 0.0e+00 1597.4 1364 66.9
Mapoly0035s0137 Marchantia polymorpha HOM05D001486 ORTHO05D004921 0.0e+00 1586.6 1513 55.9
Pp3c8_3720 Physcomitrium patens HOM05D001486 ORTHO05D004921 0.0e+00 1568.5 1524 55.3
TAR629G0611 Trochodendron aralioides HOM05D001486 ORTHO05D004921 0.0e+00 1553.9 988 78.9
Lj1g0014898 Lotus japonicus HOM05D001486 ORTHO05D004921 0.0e+00 1377.8 1087 67.0
Peaxi162Scf01152g00010 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1346.6 1278 61.6
Zm00001eb399840 Zea mays HOM05D001486 ORTHO05D004921 0.0e+00 1333.2 1213 57.5
AagrBONN_evm.TU.Sc2ySwM_362.1455 Anthoceros agrestis HOM05D001486 ORTHO05D004921 0.0e+00 1313.9 1298 54.9
GSVIVG01011662001 Vitis vinifera HOM05D001486 ORTHO05D004921 0.0e+00 1136.7 738 79.3
Peaxi162Scf00047g00710 Petunia axillaris HOM05D001486 ORTHO05D004921 0.0e+00 1077.0 774 74.5
Peaxi162Scf01152g00113 Petunia axillaris HOM05D001486 ORTHO05D004921 2.3e-306 1056.2 920 65.4
SEGI_07920 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 2.0e-297 1026.5 846 62.9
MD16G1018500 Malus domestica HOM05D001486 ORTHO05D004921 3.8e-293 1012.3 748 68.6
unitig_27.g25159 Utricularia gibba HOM05D001486 ORTHO05D004921 1.0e-261 907.9 705 66.7
CDE06G1861 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.6e-230 804.3 578 68.9
unitig_27.g25160 Utricularia gibba HOM05D001486 ORTHO05D004921 7.9e-206 722.2 613 62.0
CDE06G1153 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.1e-194 683.7 598 60.7
Carub.0127s0003 Capsella rubella HOM05D001486 ORTHO05D004921 4.8e-179 633.3 892 43.5
GSVIVG01011661001 Vitis vinifera HOM05D001486 ORTHO05D004921 1.1e-170 605.5 379 78.4
TAR629G0795 Trochodendron aralioides HOM05D001486 ORTHO05D004921 1.8e-170 604.7 442 74.7
ECA247G0951 Erigeron canadensis HOM05D001486 ORTHO05D004921 4.1e-170 603.6 742 47.7
MD16G1018600 Malus domestica HOM05D001486 ORTHO05D004921 5.0e-160 570.1 474 65.6
AL1G32070 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 7.5e-148 529.6 473 60.5
RcHm_v2.0_Chr2g0167011 Rosa chinensis HOM05D001486 ORTHO05D004921 1.1e-135 489.2 570 51.1
CDE07G1854 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 1.2e-113 416.0 774 37.1
MCO15G435 Micromonas commoda HOM05D001486 ORTHO05D004921 5.1e-104 384.0 1845 25.2
CDE07G0203 Ceratophyllum demersum HOM05D001486 ORTHO05D004921 3.3e-95 354.8 434 47.7
MD16G1018800 Malus domestica HOM05D001486 ORTHO05D004921 9.6e-95 353.2 218 82.1
PRCOL_00002396 Prasinoderma coloniale HOM05D001486 ORTHO05D004921 1.1e-93 349.7 1570 26.7
Cre09.g394350 Chlamydomonas reinhardtii HOM05D001486 ORTHO05D004921 4.1e-93 347.8 1593 25.4
SEGI_12334 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 1.5e-84 319.3 397 50.9
CAN.G601.1 Capsicum annuum HOM05D001486 ORTHO05D004921 6.7e-80 303.9 152 95.4
SEGI_06977 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.4e-76 291.6 224 64.7
vmacro04889 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 1.2e-73 283.1 237 62.0
AL1G32080 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 1.4e-72 279.6 230 63.9
vmacro09906 Vaccinium macrocarpon HOM05D001486 ORTHO05D004921 2.4e-69 268.9 265 55.8
FvH4_1g18130 Fragaria vesca HOM05D001486 ORTHO05D004921 7.2e-66 257.3 155 72.9
Zm00001eb255180 Zea mays HOM05D001486 ORTHO05D004921 1.6e-65 256.1 195 64.6
Cfa024881 Carpinus fangiana HOM05D005623 ORTHO05D007130 2.4e-45 189.1 1363 23.3
SGA_v2.0_scaffold23G10209 Striga asiatica HOM05D001486 ORTHO05D004921 4.5e-44 184.9 102 82.4
Pp3c3_36410 Physcomitrium patens HOM05D001486 ORTHO05D004921 1.0e-43 183.7 190 53.2
CSS0012816 Camellia sinensis var. sinensis HOM05D001486 ORTHO05D004921 3.8e-43 181.8 188 58.0
RcHm_v2.0_Chr2g0167021 Rosa chinensis HOM05D001486 ORTHO05D004921 1.7e-38 166.4 223 49.8
CARHR227050 Cardamine hirsuta HOM05D001486 ORTHO05D004921 1.8e-37 162.9 155 52.9
Zm00001eb235300 Zea mays HOM05D001486 ORTHO05D004921 3.1e-32 145.6 125 56.0
Zm00001eb201400 Zea mays HOM05D001486 ORTHO05D004921 8.9e-32 144.1 131 58.0
AL2G18360 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 3.2e-29 135.6 343 32.1
Rhsim12G0118300 Rhododendron simsii HOM05D001486 ORTHO05D004921 2.5e-26 125.9 101 64.4
BcaC01g04114 Brassica carinata HOM05D001486 ORTHO05D012131 1.8e-24 119.8 91 62.6
BcaC09g49263 Brassica carinata HOM05D001486 ORTHO05D012131 1.8e-24 119.8 96 60.4
ClCG01G015310 Citrullus lanatus HOM05D001486 ORTHO05D004921 2.6e-23 115.9 56 87.5
SEGI_12550 Sequoiadendron giganteum HOM05D001486 ORTHO05D004921 3.2e-21 109.0 58 79.3
ClCG09G011850 Citrullus lanatus HOM05D004959 ORTHO05D005961 2.3e-19 102.8 67 70.1
AL3G34910 Arabidopsis lyrata HOM05D001486 ORTHO05D004921 2.1e-17 96.3 136 44.1
GSVIVG01026805001 Vitis vinifera HOM05D001486 ORTHO05D004921 5.2e-16 91.7 70 64.3
GSVIVG01001572001 Vitis vinifera HOM05D001486 ORTHO05D004921 2.6e-15 89.4 112 49.1
Hma1.2p1_0277F.1_g111730 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 4.9e-14 85.1 53 75.5
Hma1.2p1_0705F.1_g206905 Hydrangea macrophylla HOM05D001486 ORTHO05D004921 4.9e-14 85.1 53 75.5
SMO306G0002 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 8.4e-14 84.3 459 24.8
CSS0014875 Camellia sinensis var. sinensis HOM05D014252 ORTHO05D004921 1.4e-08 67.0 40 82.5
Zm00001eb334690 Zea mays HOM05D001486 ORTHO05D037216 6.9e-08 64.7 51 60.8
FvH4_4g10520 Fragaria vesca HOM05D002057 ORTHO05D004921 1.3e-06 60.5 34 73.5
SMO270G0006 Selaginella moellendorffii HOM05D065592 ORTHO05D004921 4.9e-06 58.5 130 29.2


User provided reference genes

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