Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 2.9e-227 791.6 403 100.0
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 5.6e-215 750.7 387 99.0
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 2.0e-159 566.2 390 76.2
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 2.0e-159 566.2 401 74.6
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 1.5e-154 550.1 406 73.4
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 6.4e-150 534.6 401 71.8
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 7.9e-108 394.8 425 54.1
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 9.0e-96 354.8 396 52.3
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 2.1e-92 343.6 387 53.5
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 2.3e-91 340.1 400 52.2
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 2.5e-90 336.7 394 50.3
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 3.3e-90 336.3 412 51.0
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 4.3e-90 335.9 403 52.9
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 1.6e-89 334.0 388 50.3
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 4.8e-89 332.4 394 51.5
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 2.4e-88 330.1 398 51.3
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 1.2e-87 327.8 395 49.1
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 3.4e-87 326.2 449 47.7
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 3.2e-85 319.7 387 51.2
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 5.7e-82 308.9 362 51.1
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 2.2e-81 307.0 396 48.5
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 1.7e-78 297.4 396 47.2
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 1.9e-77 293.9 384 46.6
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 2.8e-73 280.0 395 49.1
Sabra08G0053500 Salix brachista HOM05D004863 ORTHO05D005802 3.1e-72 276.6 398 45.2
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 3.4e-71 273.1 402 44.3
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 1.4e-67 261.2 389 46.3
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 9.7e-66 255.0 411 44.5
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 6.3e-65 252.3 411 43.6
GSVIVG01032766001 Vitis vinifera HOM05D004863 ORTHO05D005802 9.1e-64 248.4 405 45.2
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 1.7e-62 244.2 396 43.2
Atru.chr12.77 Acer truncatum HOM05D004863 ORTHO05D005802 1.9e-61 240.7 387 43.7
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 5.5e-61 239.2 400 41.0
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 2.7e-60 236.9 396 42.2
Sed0025167 Sechium edule HOM05D004863 ORTHO05D005802 2.6e-58 230.3 336 44.6
LjContig00357g0010590 Lotus japonicus HOM05D004863 ORTHO05D005802 5.7e-58 229.2 391 42.2
Sc10g0002560 Simmondsia chinensis HOM05D004863 ORTHO05D005802 2.7e-55 220.3 371 42.6
VMungo0647G0293 Vigna mungo HOM05D004863 ORTHO05D005802 3.5e-55 219.9 385 41.8
FAN13G2483 Fragaria x ananassa HOM05D004863 ORTHO05D005802 5.5e-53 212.6 391 39.6
Aqoxy5G04144 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 7.2e-53 212.2 393 42.5
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 2.7e-52 210.3 395 39.5
THA.LOC104816534 Tarenaya hassleriana HOM05D004863 ORTHO05D005802 3.6e-52 209.9 390 39.7
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.4e-51 208.0 391 39.4
Aqoxy1G01634 Aquilegia oxysepala HOM05D004863 ORTHO05D005802 3.0e-51 206.8 393 42.2
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 6.8e-51 205.7 394 39.8
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.5e-50 204.5 405 37.5
TAR357G0004 Trochodendron aralioides HOM05D004863 ORTHO05D005802 2.0e-50 204.1 390 38.7
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 2.6e-50 203.8 397 40.1
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 9.8e-50 201.8 397 39.8
Phvul.008G221700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 2.7e-47 193.7 363 41.3
Ca_05985_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 5.9e-47 192.6 401 38.2
Phvul.007G217900 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.0e-46 191.8 389 40.1
Psat2g030120 Pisum sativum HOM05D004863 ORTHO05D005802 1.3e-46 191.4 404 38.1
EL10Ac2g04883 Beta vulgaris HOM05D004863 ORTHO05D005802 2.3e-46 190.7 404 37.9
Lj4g0013997 Lotus japonicus HOM05D004863 ORTHO05D005802 3.8e-46 189.9 395 39.2
Glyma.14G057200 Glycine max HOM05D004863 ORTHO05D005802 1.9e-45 187.6 385 39.0
PSO017G6293 Papaver somniferum HOM05D004863 ORTHO05D005802 5.5e-45 186.0 408 39.7
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 2.1e-44 184.1 333 39.9
FAN08G0290 Fragaria x ananassa HOM05D004863 ORTHO05D005802 6.1e-44 182.6 391 35.8
arahy.Tifrunner.gnm1.ann1.SVWC8K Arachis hypogaea HOM05D004863 ORTHO05D005802 1.8e-43 181.0 377 36.9
PSO170G5836 Papaver somniferum HOM05D004863 ORTHO05D005802 1.8e-43 181.0 447 37.1
Thhalv10013002m.g Eutrema salsugineum HOM05D004863 ORTHO05D005802 8.9e-43 178.7 401 38.4
Glyma.02G263700 Glycine max HOM05D004863 ORTHO05D005802 1.2e-42 178.3 395 37.0
ClCG07G004460 Citrullus lanatus HOM05D004863 ORTHO05D005802 7.5e-42 175.6 353 39.4
Nn2g10959 Nelumbo nucifera HOM05D004863 ORTHO05D005802 7.5e-42 175.6 416 36.5
arahy.Tifrunner.gnm1.ann1.U87T4F Arachis hypogaea HOM05D004863 ORTHO05D005802 9.8e-42 175.3 372 35.8
Phvul.001G192700 Phaseolus vulgaris HOM05D004863 ORTHO05D005802 1.3e-41 174.9 395 36.7
ECA234G2111 Erigeron canadensis HOM05D004863 ORTHO05D005802 2.2e-41 174.1 410 37.1
Ah.16g103820 Amaranthus hybridus HOM05D004863 ORTHO05D005802 1.8e-40 171.0 403 33.3
AUR62012290 Chenopodium quinoa HOM05D004863 ORTHO05D005802 3.1e-40 170.2 382 36.4
ECA233G5735 Erigeron canadensis HOM05D000718 ORTHO05D005802 5.4e-40 169.5 400 36.8
AL6G15380 Arabidopsis lyrata HOM05D004863 ORTHO05D005802 7.0e-40 169.1 403 36.0
EL10Ac8g19300 Beta vulgaris HOM05D004863 ORTHO05D005802 7.0e-40 169.1 451 33.9
Cpa.g.sc19.141 Carica papaya HOM05D004863 ORTHO05D005802 1.2e-39 168.3 446 34.3
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.0e-39 167.5 222 45.5
Aa31LG11G6560 Aethionema arabicum HOM05D004863 ORTHO05D005802 3.5e-39 166.8 423 33.8
Medtr5g083120 Medicago truncatula HOM05D004863 ORTHO05D005802 4.5e-39 166.4 379 38.3
AT5G05490 Arabidopsis thaliana HOM05D004863 ORTHO05D005802 5.9e-39 166.0 403 35.7
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 2.3e-38 164.1 219 45.2
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 3.8e-38 163.3 391 35.5
Sp6g37360 Schrenkiella parvula HOM05D004863 ORTHO05D005802 3.8e-38 163.3 398 35.4
Ah.16g108070 Amaranthus hybridus HOM05D004863 ORTHO05D005802 4.3e-37 159.8 406 32.3
Gorai.012G078600 Gossypium raimondii HOM05D004863 ORTHO05D005802 4.3e-37 159.8 361 35.2
Gohir.D04G070101 Gossypium hirsutum HOM05D004863 ORTHO05D005802 5.6e-37 159.5 361 35.2
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 7.3e-37 159.1 402 34.6
BraA10t45119Z Brassica rapa HOM05D004863 ORTHO05D005297 4.7e-36 156.4 400 35.5
Carub.0006s0439 Capsella rubella HOM05D004863 ORTHO05D005802 6.1e-36 156.0 410 34.1
CARHR207780 Cardamine hirsuta HOM05D004863 ORTHO05D005802 8.0e-36 155.6 402 35.1
A10p30780 Brassica napus HOM05D004863 ORTHO05D005297 1.4e-35 154.8 400 35.5
BcaC06g32260 Brassica carinata HOM05D004863 ORTHO05D005297 5.2e-35 152.9 401 34.9
Gohir.A05G331501 Gossypium hirsutum HOM05D004863 ORTHO05D005802 5.2e-35 152.9 362 35.1
Lalb_Chr10g0105231 Lupinus albus HOM05D004863 ORTHO05D005802 2.0e-34 151.0 250 40.0
C09p71270 Brassica napus HOM05D004863 ORTHO05D005297 3.4e-34 150.2 401 35.7
BolC9t59888H Brassica oleracea HOM05D004863 ORTHO05D005802 3.4e-34 150.2 401 35.7
RcHm_v2.0_Chr5g0049691 Rosa chinensis HOM05D004863 ORTHO05D005802 5.8e-34 149.4 269 41.3
DCAR_011837 Daucus carota HOM05D004863 ORTHO05D001062 5.4e-32 142.9 419 31.7
Ca_05983_v3 Cicer arietinum L. HOM05D004863 ORTHO05D005802 3.5e-31 140.2 344 35.8
RcHm_v2.0_Chr7g0230601 Rosa chinensis HOM05D004863 ORTHO05D005802 8.6e-30 135.6 249 40.2
RcHm_v2.0_Chr7g0236461 Rosa chinensis HOM05D004863 ORTHO05D005802 4.7e-28 129.8 233 42.1
RcHm_v2.0_Chr7g0236501 Rosa chinensis HOM05D004863 ORTHO05D005802 4.7e-28 129.8 233 42.1
TPR.G38454 Trifolium pratense HOM05D004863 ORTHO05D005802 2.3e-27 127.5 422 30.8
AUR62022930 Chenopodium quinoa HOM05D004863 ORTHO05D005802 2.6e-26 124.0 374 32.6
MBI03_g10782_MAGBIO Magnolia biondii HOM05D004863 ORTHO05D005802 4.4e-26 123.2 318 37.1
TPR.G25338 Trifolium pratense HOM05D004863 ORTHO05D005802 2.5e-21 107.5 311 33.1
Medtr5g081260 Medicago truncatula HOM05D004863 ORTHO05D005802 2.8e-20 104.0 109 47.7
unitig_46.g18609 Utricularia gibba HOM05D004863 ORTHO05D005802 6.2e-20 102.8 117 50.4
CAN.G1001.50 Capsicum annuum HOM05D004863 ORTHO05D005802 5.2e-19 99.8 52 92.3
PSO017G2966 Papaver somniferum HOM05D004863 ORTHO05D005802 2.4e-16 90.9 408 29.9
PSO170G1093 Papaver somniferum HOM05D004863 ORTHO05D005802 3.9e-14 83.6 412 29.4
RcHm_v2.0_Chr7g0231171 Rosa chinensis HOM05D004863 ORTHO05D005802 2.5e-13 80.9 147 39.5
PSO478G0733 Papaver somniferum HOM05D000294 ORTHO05D000177 5.2e-11 73.2 121 38.8
HPP92_003692 Vanilla planifolia HOM05D004863 ORTHO05D005802 7.6e-10 69.3 309 27.5
RcHm_v2.0_Chr7g0236431 Rosa chinensis HOM05D004863 ORTHO05D005802 1.3e-09 68.6 76 44.7
PSO063G5055 Papaver somniferum HOM05D003057 ORTHO05D003904 1.7e-09 68.2 180 31.1
FvH4_5g27761 Fragaria vesca HOM05D004863 ORTHO05D005802 1.1e-08 65.5 138 36.2
RcHm_v2.0_Chr0c11g0499571 Rosa chinensis HOM05D004863 ORTHO05D005802 1.9e-08 64.7 76 47.4
Oeu041939.1 Olea europaea HOM05D004863 ORTHO05D005802 2.4e-08 64.3 55 54.5
Lalb_Chr10g0105241 Lupinus albus HOM05D004863 ORTHO05D005802 5.4e-08 63.2 86 50.0
Ca_05986_v3 Cicer arietinum L. HOM05D001661 ORTHO05D001575 9.2e-08 62.4 98 42.9
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 1.2e-07 62.0 178 35.4
TAR362G0045 Trochodendron aralioides HOM05D004863 ORTHO05D005802 1.2e-07 62.0 81 50.6
PSO170G4809 Papaver somniferum HOM05D003057 ORTHO05D003904 2.1e-07 61.2 136 33.1
PSO339G1811 Papaver somniferum HOM05D000294 ORTHO05D000177 2.1e-07 61.2 136 33.1
PSO832G1972 Papaver somniferum HOM05D000294 ORTHO05D000177 2.1e-07 61.2 136 33.1
PSO832G3441 Papaver somniferum HOM05D000294 ORTHO05D000177 2.1e-07 61.2 136 33.1
MD04G1165800 Malus domestica HOM05D004863 ORTHO05D005802 3.9e-06 57.0 105 40.0
Medtr5g081270 Medicago truncatula HOM05D004863 ORTHO05D005802 5.1e-06 56.6 79 44.3


User provided reference genes

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