Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g071460.3 Solanum lycopersicum HOM05D004647 ORTHO05D005349 2.5e-133 478.8 239 100.0
Sopen06g027740 Solanum pennellii HOM05D004647 ORTHO05D005349 7.4e-130 467.2 239 98.7
PGSC0003DMG400027091 Solanum tuberosum HOM05D004647 ORTHO05D005349 8.5e-126 453.8 239 95.8
Nitab4.5_0000003g0580 Nicotiana tabacum HOM05D004647 ORTHO05D005349 6.1e-116 421.0 244 87.3
Nitab4.5_0000866g0170 Nicotiana tabacum HOM05D004647 ORTHO05D005349 2.3e-115 419.1 244 86.5
CAN.G628.78 Capsicum annuum HOM05D004647 ORTHO05D005349 2.0e-114 416.0 241 86.7
DCAR_016485 Daucus carota HOM05D004647 ORTHO05D005349 1.6e-103 379.8 237 78.1
Lj5A124T65 Lonicera japonica HOM05D004647 ORTHO05D005349 5.9e-103 377.9 238 78.6
Ciclev10021986m.g Citrus clementina HOM05D004647 ORTHO05D005349 2.9e-102 375.6 242 76.4
Rhsim12G0164400 Rhododendron simsii HOM05D004647 ORTHO05D005349 3.8e-102 375.2 233 78.5
GSVIVG01007738001 Vitis vinifera HOM05D004647 ORTHO05D005349 3.8e-102 375.2 233 80.3
Cc04_g13970 Coffea canephora HOM05D004647 ORTHO05D005349 6.5e-102 374.4 237 77.6
vmacro16607 Vaccinium macrocarpon HOM05D004647 ORTHO05D005349 1.9e-101 372.9 233 78.1
Hma1.2p1_0701F.1_g205920 Hydrangea macrophylla HOM05D004647 ORTHO05D005349 3.2e-101 372.1 239 76.2
Sabra12G0057400 Salix brachista HOM05D004647 ORTHO05D005349 5.5e-101 371.3 236 76.7
Actinidia19099 Actinidia chinensis HOM05D004647 ORTHO05D005349 4.7e-100 368.2 237 75.9
MSTRG.11448 Avicennia marina HOM05D004647 ORTHO05D005349 4.7e-100 368.2 237 75.9
Potri.012G080300 Populus trichocarpa HOM05D004647 ORTHO05D005349 4.7e-100 368.2 236 76.3
CiPaw.11G026900 Carya illinoinensis HOM05D004647 ORTHO05D005349 2.3e-99 365.9 236 77.1
PGR083G2070 Punica granatum HOM05D004647 ORTHO05D005349 5.2e-99 364.8 238 74.4
TWI15G0781 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 5.2e-99 364.8 235 75.7
Eucgr.B00371 Eucalyptus grandis HOM05D004647 ORTHO05D005349 1.2e-98 363.6 240 75.4
TPR.G14966 Trifolium pratense HOM05D004647 ORTHO05D005349 3.3e-98 362.1 238 75.2
CANSAT64G1060 Cannabis sativa HOM05D004647 ORTHO05D005349 4.4e-98 361.7 237 74.7
Prupe.5G174300 Prunus persica HOM05D004647 ORTHO05D005349 4.4e-98 361.7 236 72.5
Atru.chr9.2461 Acer truncatum HOM05D004647 ORTHO05D005349 1.7e-97 359.8 237 74.7
Gohir.A03G097600 Gossypium hirsutum HOM05D004647 ORTHO05D005349 1.7e-97 359.8 237 75.1
PSO017G4490 Papaver somniferum HOM05D004647 ORTHO05D005349 1.7e-97 359.8 237 75.5
Migut.I00016 Erythranthe guttata HOM05D004647 ORTHO05D005349 2.2e-97 359.4 233 76.0
PSO478G0146 Papaver somniferum HOM05D004647 ORTHO05D005349 2.2e-97 359.4 237 75.5
Glyma.02G112000 Glycine max HOM05D004647 ORTHO05D005349 3.7e-97 358.6 232 74.6
Lj2g0019057 Lotus japonicus HOM05D004647 ORTHO05D005349 3.7e-97 358.6 232 76.7
Lalb_Chr10g0098541 Lupinus albus HOM05D004647 ORTHO05D005349 3.7e-97 358.6 241 74.3
Peaxi162Scf00689g00228 Petunia axillaris HOM05D004647 ORTHO05D005349 3.7e-97 358.6 202 89.1
TWI53G1063 Tripterygium wilfordii HOM05D004647 ORTHO05D005349 4.8e-97 358.2 233 76.0
Gorai.005G137000 Gossypium raimondii HOM05D004647 ORTHO05D005349 6.3e-97 357.8 237 74.7
Medtr5g043110 Medicago truncatula HOM05D004647 ORTHO05D005349 6.3e-97 357.8 238 74.4
TPR.G19928 Trifolium pratense HOM05D004647 ORTHO05D005349 6.3e-97 357.8 238 74.4
arahy.Tifrunner.gnm1.ann1.HI7WIW Arachis hypogaea HOM05D004647 ORTHO05D005349 1.8e-96 356.3 237 73.8
arahy.Tifrunner.gnm1.ann1.T8C5SJ Arachis hypogaea HOM05D004647 ORTHO05D005349 1.8e-96 356.3 237 73.8
Psat2g127400 Pisum sativum HOM05D004647 ORTHO05D005349 1.8e-96 356.3 232 75.4
FAN18G2734 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.1e-96 355.5 232 73.3
Oeu035987.1 Olea europaea HOM05D004647 ORTHO05D005349 3.1e-96 355.5 244 73.4
Gohir.D02G116700 Gossypium hirsutum HOM05D004647 ORTHO05D005349 4.1e-96 355.1 237 74.3
RcHm_v2.0_Chr7g0193601 Rosa chinensis HOM05D004647 ORTHO05D005349 5.3e-96 354.8 232 73.7
Aqoxy3G01032 Aquilegia oxysepala HOM05D004647 ORTHO05D005349 7.0e-96 354.4 233 74.2
Hund09433 Selenicereus undatus HOM05D004647 ORTHO05D005349 1.2e-95 353.6 232 74.6
Phvul.002G091200 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 2.0e-95 352.8 232 73.7
Sc10g0010060 Simmondsia chinensis HOM05D004647 ORTHO05D005349 2.0e-95 352.8 237 73.0
COL.COLO4_30028 Corchorus olitorius HOM05D004647 ORTHO05D005349 2.7e-95 352.4 268 67.5
FAN13G1078 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.5e-95 352.1 232 72.8
ClCG06G016990 Citrullus lanatus HOM05D004647 ORTHO05D005349 4.5e-95 351.7 230 73.5
HPP92_005895 Vanilla planifolia HOM05D004647 ORTHO05D005349 4.5e-95 351.7 230 73.9
Glyma.01G053700 Glycine max HOM05D004647 ORTHO05D005349 5.9e-95 351.3 232 73.7
Phvul.003G111100 Phaseolus vulgaris HOM05D004647 ORTHO05D005349 5.9e-95 351.3 232 73.7
FAN08G1047 Fragaria x ananassa HOM05D004647 ORTHO05D005349 7.7e-95 350.9 232 73.3
FAN04G0366 Fragaria x ananassa HOM05D004647 ORTHO05D005349 1.0e-94 350.5 231 73.2
THA.LOC104807116 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.0e-94 350.5 230 74.8
THA.LOC104824976 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.0e-94 350.5 230 74.8
Ca_06453_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 1.3e-94 350.1 225 76.9
MD06G1174300 Malus domestica HOM05D004647 ORTHO05D005349 2.9e-94 349.0 236 73.7
SGA_v2.0_scaffold90G27942 Striga asiatica HOM05D004647 ORTHO05D005349 2.9e-94 349.0 252 69.0
Carub.0004s0503 Capsella rubella HOM05D004647 ORTHO05D005349 3.8e-94 348.6 236 71.2
CARHR059710 Cardamine hirsuta HOM05D004647 ORTHO05D005349 3.8e-94 348.6 232 70.7
Lsat_1_v5_gn_4_75321 Lactuca sativa HOM05D004647 ORTHO05D005349 3.8e-94 348.6 237 71.3
QL10p011820 Quercus lobata HOM05D004647 ORTHO05D005349 6.5e-94 347.8 236 72.9
Sed0013198 Sechium edule HOM05D004647 ORTHO05D005349 8.5e-94 347.4 232 72.4
ATR0680G372 Amborella trichopoda HOM05D004647 ORTHO05D005349 4.2e-93 345.1 232 71.1
CSS0008435 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 9.4e-93 344.0 237 73.4
AL7G19680 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 1.6e-92 343.2 236 70.8
AUR62030968 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.6e-92 343.2 232 72.4
Manes.14G066300 Manihot esculenta HOM05D004647 ORTHO05D005349 4.7e-92 341.7 214 78.0
Os01g0891400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 4.7e-92 341.7 232 72.4
MBI16_g05634_MAGBIO Magnolia biondii HOM05D004647 ORTHO05D005349 6.1e-92 341.3 239 68.6
EL10Ac5g10752 Beta vulgaris HOM05D004647 ORTHO05D005349 1.0e-91 340.5 227 72.7
BcaC01g01036 Brassica carinata HOM05D004647 ORTHO05D005349 1.0e-91 340.5 236 71.2
A08p18330 Brassica napus HOM05D004647 ORTHO05D005349 1.0e-91 340.5 236 71.2
BraA08t33790Z Brassica rapa HOM05D004647 ORTHO05D005349 1.0e-91 340.5 236 71.2
HanXRQChr16g0504011 Helianthus annuus HOM05D004647 ORTHO05D005349 1.4e-91 340.1 240 69.6
Sp7g29960 Schrenkiella parvula HOM05D004647 ORTHO05D005349 1.4e-91 340.1 236 72.0
Os01g0661400 Oryza sativa ssp. japonica HOM05D004647 ORTHO05D005349 2.3e-91 339.3 232 71.6
AT4G32175 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.0e-91 339.0 232 72.4
unitig_52.g17486 Utricularia gibba HOM05D004647 ORTHO05D005349 1.2e-90 337.0 232 71.6
AT2G25355 Arabidopsis thaliana HOM05D004647 ORTHO05D005349 3.4e-90 335.5 236 67.8
BolC3t21057H Brassica oleracea HOM05D004647 ORTHO05D005349 3.4e-90 335.5 236 70.3
AL4G16790 Arabidopsis lyrata HOM05D004647 ORTHO05D005349 4.4e-90 335.1 236 67.8
ECA232G2959 Erigeron canadensis HOM05D004647 ORTHO05D005349 7.5e-90 334.3 233 69.5
Thecc.03G011300 Theobroma cacao HOM05D004647 ORTHO05D005349 7.5e-90 334.3 216 76.9
BcaB03g12733 Brassica carinata HOM05D004647 ORTHO05D005349 1.3e-89 333.6 231 71.4
SalBow3G4197 Salvia bowleyana HOM05D004647 ORTHO05D005349 2.8e-89 332.4 270 64.1
Thhalv10026115m.g Eutrema salsugineum HOM05D004647 ORTHO05D005349 6.3e-89 331.3 236 69.9
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 6.3e-89 331.3 240 68.3
FvH4_5g05270 Fragaria vesca HOM05D004647 ORTHO05D005349 3.1e-88 328.9 215 73.5
FAN18G2015 Fragaria x ananassa HOM05D004647 ORTHO05D005349 3.1e-88 328.9 287 59.2
DCAR_028017 Daucus carota HOM05D004647 ORTHO05D005349 5.4e-88 328.2 202 79.2
AUR62008215 Chenopodium quinoa HOM05D004647 ORTHO05D005349 1.2e-87 327.0 257 65.0
QL02p100995 Quercus lobata HOM05D004647 ORTHO05D005349 2.0e-87 326.2 335 53.4
TAR374G0909 Trochodendron aralioides HOM05D004647 ORTHO05D005349 2.0e-87 326.2 194 80.9
Zm00001eb157720 Zea mays HOM05D004647 ORTHO05D005349 4.5e-87 325.1 232 70.3
Cpa.g.sc124.56 Carica papaya HOM05D004647 ORTHO05D005349 3.6e-84 315.5 194 78.9
CARHR240100 Cardamine hirsuta HOM05D004647 ORTHO05D005349 1.8e-83 313.2 236 64.0
MD06G1174500 Malus domestica HOM05D004647 ORTHO05D005349 1.8e-83 313.2 238 66.8
Haze_07464 Corylus avellana HOM05D004647 ORTHO05D005349 2.0e-79 299.7 237 65.8
Zm00001eb157740 Zea mays HOM05D004647 ORTHO05D005349 3.5e-79 298.9 203 72.9
CDE11G0116 Ceratophyllum demersum HOM05D004647 ORTHO05D005349 4.5e-79 298.5 209 69.4
Carub.0007s0838 Capsella rubella HOM05D004647 ORTHO05D005349 4.7e-76 288.5 194 71.6
Aa31LG2G17760 Aethionema arabicum HOM05D004647 ORTHO05D005349 1.7e-73 280.0 236 60.6
Dinv02900 Davidia involucrata HOM05D004647 ORTHO05D005349 7.8e-71 271.2 172 75.6
Mapoly0033s0011 Marchantia polymorpha HOM05D004647 ORTHO05D005349 5.0e-70 268.5 232 54.7
Pp3c9_4960 Physcomitrium patens HOM05D004647 ORTHO05D005349 8.6e-70 267.7 230 57.8
CsaV3_1G001530 Cucumis sativus L. HOM05D004647 ORTHO05D005349 1.2e-66 257.3 167 73.1
SMO358G0755 Selaginella moellendorffii HOM05D004647 ORTHO05D005349 1.3e-65 253.8 224 54.5
THA.LOC104801749 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 9.2e-64 247.7 157 75.2
THA.LOC104815465 Tarenaya hassleriana HOM05D004647 ORTHO05D005349 1.1e-61 240.7 150 77.3
Nn3g16872 Nelumbo nucifera HOM05D004647 ORTHO05D005349 6.6e-54 214.9 137 73.7
SEGI_17588 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.6e-54 214.9 142 74.6
SEGI_39775 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 6.6e-54 214.9 142 74.6
AagrBONN_evm.TU.Sc2ySwM_117.3294 Anthoceros agrestis HOM05D004647 ORTHO05D005349 1.1e-53 214.2 194 55.7
Cre07.g319900 Chlamydomonas reinhardtii HOM05D004647 ORTHO05D005349 2.0e-50 203.4 232 45.7
CSS0025503 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 5.8e-50 201.8 127 79.5
Zm00001eb359590 Zea mays HOM05D004647 ORTHO05D005349 6.4e-49 198.4 131 72.5
MELO3C026290.2 Cucumis melo HOM05D004647 ORTHO05D005349 8.4e-49 198.0 131 71.0
Sed0007118 Sechium edule HOM05D004647 ORTHO05D005349 4.1e-48 195.7 185 55.7
QL02p101061 Quercus lobata HOM05D004647 ORTHO05D005349 1.9e-45 186.8 119 77.3
QL02p101105 Quercus lobata HOM05D004647 ORTHO05D005349 5.6e-45 185.3 119 76.5
VMungo1215G3307 Vigna mungo HOM05D004647 ORTHO05D005349 9.6e-45 184.5 121 72.7
VMungo1215G1703 Vigna mungo HOM05D004647 ORTHO05D005349 4.7e-44 182.2 117 73.5
PSO384G3338 Papaver somniferum HOM05D004647 ORTHO05D005349 9.0e-43 177.9 167 57.5
Medtr5g009430 Medicago truncatula HOM05D004647 ORTHO05D005349 5.8e-42 175.3 120 71.7
CAN.G110.1 Capsicum annuum HOM05D004647 ORTHO05D005349 3.2e-40 169.5 132 68.9
CBR_g61059 Chara braunii HOM05D004647 ORTHO05D005349 2.7e-39 166.4 233 42.9
Ca_07701_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.0e-34 150.2 129 62.8
Glyma.19G045000 Glycine max HOM05D004647 ORTHO05D005349 8.4e-33 144.8 121 62.0
SEGI_00924 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.7e-31 139.8 101 71.3
CSS0039197 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 3.5e-31 139.4 111 65.8
Oeu005668.1 Olea europaea HOM05D004647 ORTHO05D005349 6.0e-31 138.7 85 76.5
PRCOL_00002933 Prasinoderma coloniale HOM05D004647 ORTHO05D005349 9.6e-29 131.3 178 41.6
PGSC0003DMG400042364 Solanum tuberosum HOM05D004647 ORTHO05D005349 8.1e-28 128.3 94 70.2
SEGI_26695 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 1.2e-26 124.4 144 40.3
Cc00_g25260 Coffea canephora HOM05D004647 ORTHO05D005349 6.4e-25 118.6 84 71.4
Cc00_g18100 Coffea canephora HOM05D004647 ORTHO05D005349 5.5e-24 115.5 92 64.1
Cfa024128 Carpinus fangiana HOM05D004647 ORTHO05D005349 7.1e-24 115.2 237 34.2
Ca_22423_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 2.3e-22 110.2 100 64.0
Ca_24957_v3 Cicer arietinum L. HOM05D004647 ORTHO05D005349 3.3e-21 106.3 106 51.9
Potri.015G075400 Populus trichocarpa HOM05D004647 ORTHO05D005349 1.8e-19 100.5 72 66.7
CSS0048825 Camellia sinensis var. sinensis HOM05D004647 ORTHO05D005349 6.5e-17 92.0 54 79.6
MCO01G631 Micromonas commoda HOM05D004647 ORTHO05D005349 1.6e-15 87.4 156 31.4
Cc00_g33640 Coffea canephora HOM05D004647 ORTHO05D005349 1.8e-14 84.0 54 74.1
SEGI_09107 Sequoiadendron giganteum HOM05D004647 ORTHO05D005349 2.3e-14 83.6 63 65.1
MD14G1181100 Malus domestica HOM05D004647 ORTHO05D005349 4.8e-12 75.9 162 35.8
QL02p027014 Quercus lobata HOM05D004647 ORTHO05D005349 2.7e-07 60.1 34 79.4


User provided reference genes

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