Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g033900.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 3.1e-63 245.0 123 100.0
Solyc06g033890.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 7.8e-51 203.8 123 86.2
PGSC0003DMG400027588 Solanum tuberosum HOM05D002720 ORTHO05D002901 2.9e-21 105.5 63 85.7
Solyc03g118380.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 3.2e-20 102.1 63 84.1
Sopen02g019870 Solanum pennellii HOM05D002720 ORTHO05D002901 3.2e-20 102.1 68 79.4
Sopen03g037280 Solanum pennellii HOM05D002720 ORTHO05D002901 3.2e-20 102.1 63 84.1
PGSC0003DMG400014251 Solanum tuberosum HOM05D002720 ORTHO05D002901 3.2e-20 102.1 63 84.1
PGSC0003DMG400008310 Solanum tuberosum HOM05D002720 ORTHO05D002901 5.5e-20 101.3 63 84.1
Sopen06g014100 Solanum pennellii HOM05D002720 ORTHO05D002901 1.2e-19 100.1 63 79.4
Nitab4.5_0006814g0010 Nicotiana tabacum HOM05D002720 ORTHO05D002901 3.6e-19 98.6 63 81.0
CAN.G650.21 Capsicum annuum HOM05D002720 ORTHO05D002901 1.0e-18 97.1 63 81.0
Peaxi162Scf00065g00144 Petunia axillaris HOM05D002720 ORTHO05D002901 1.0e-18 97.1 63 79.4
PGSC0003DMG400028430 Solanum tuberosum HOM05D002720 ORTHO05D002901 1.4e-18 96.7 63 81.0
Solyc06g033895.1 Solanum lycopersicum HOM05D002720 ORTHO05D002901 5.1e-18 94.7 63 74.6
Nitab4.5_0000695g0070 Nicotiana tabacum HOM05D002720 ORTHO05D002901 1.5e-17 93.2 73 65.8
Solyc09g048970.3 Solanum lycopersicum HOM05D002720 ORTHO05D002901 1.9e-17 92.8 57 82.5
Dinv44630 Davidia involucrata HOM05D002720 ORTHO05D002901 9.7e-17 90.5 59 71.2
CSS0039978 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 8.2e-16 87.4 58 69.0
Rhsim04G0190900 Rhododendron simsii HOM05D002720 ORTHO05D002901 1.1e-15 87.0 59 67.8
vmacro08613 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 1.1e-15 87.0 59 67.8
Hma1.2p1_0065F.1_g035630 Hydrangea macrophylla HOM05D002720 ORTHO05D002901 2.4e-15 85.9 59 69.5
vmacro08407 Vaccinium macrocarpon HOM05D002720 ORTHO05D002901 2.4e-15 85.9 59 66.1
Rhsim04G0192700 Rhododendron simsii HOM05D002720 ORTHO05D002901 3.1e-15 85.5 59 66.1
Cpa.g.sc2.369 Carica papaya HOM05D002720 ORTHO05D002901 4.1e-15 85.1 59 66.1
Lj6C656T10 Lonicera japonica HOM05D002720 ORTHO05D002901 4.1e-15 85.1 59 66.1
Sed0027773 Sechium edule HOM05D002720 ORTHO05D002901 6.9e-15 84.3 59 64.4
BcaB04g18254 Brassica carinata HOM05D002720 ORTHO05D002901 9.1e-15 84.0 60 65.0
BcaC07g37842 Brassica carinata HOM05D002720 ORTHO05D002901 9.1e-15 84.0 60 65.0
A08p11370 Brassica napus HOM05D002720 ORTHO05D002901 9.1e-15 84.0 60 65.0
BolC8t48229H Brassica oleracea HOM05D002720 ORTHO05D002901 9.1e-15 84.0 60 65.0
BraA08t33130Z Brassica rapa HOM05D002720 ORTHO05D002901 9.1e-15 84.0 60 65.0
MELO3C026776.2 Cucumis melo HOM05D002720 ORTHO05D002901 9.1e-15 84.0 59 62.7
CsaV3_2G013070 Cucumis sativus L. HOM05D002720 ORTHO05D002901 9.1e-15 84.0 59 62.7
GSVIVG01018108001 Vitis vinifera HOM05D002720 ORTHO05D002901 9.1e-15 84.0 59 64.4
Actinidia40090 Actinidia chinensis HOM05D002720 ORTHO05D002901 1.2e-14 83.6 59 64.4
Manes.07G037400 Manihot esculenta HOM05D002720 ORTHO05D002901 1.2e-14 83.6 59 66.1
Aa31LG9G2670 Aethionema arabicum HOM05D002720 ORTHO05D002901 2.6e-14 82.4 58 65.5
CSS0035657 Camellia sinensis var. sinensis HOM05D002720 ORTHO05D002901 2.6e-14 82.4 58 67.2
Duzib114G1034 Durio zibethinus HOM05D002720 ORTHO05D002901 2.6e-14 82.4 59 64.4
Sp7g12770 Schrenkiella parvula HOM05D002720 ORTHO05D002901 3.4e-14 82.0 60 63.3
Oeu030668.1 Olea europaea HOM05D002720 ORTHO05D002901 4.5e-14 81.6 59 66.1
Potri.008G161700 Populus trichocarpa HOM05D002720 ORTHO05D002901 4.5e-14 81.6 59 61.0
CAN.G2602.2 Capsicum annuum HOM05D002720 ORTHO05D002901 5.9e-14 81.3 58 70.7
Potri.010G077300 Populus trichocarpa HOM05D002720 ORTHO05D002901 7.7e-14 80.9 59 61.0
QL09p012558 Quercus lobata HOM05D002720 ORTHO05D002901 7.7e-14 80.9 60 58.3
Thecc.10G145800 Theobroma cacao HOM05D002720 ORTHO05D002901 7.7e-14 80.9 59 66.1
SGA_v2.0_scaffold88G27291 Striga asiatica HOM05D002720 ORTHO05D002901 1.0e-13 80.5 59 62.7
Thecc.10G145600 Theobroma cacao HOM05D002720 ORTHO05D002901 1.7e-13 79.7 59 64.4
Thecc.10G146200 Theobroma cacao HOM05D002720 ORTHO05D002901 1.7e-13 79.7 59 64.4
MSTRG.4098 Avicennia marina HOM05D002720 ORTHO05D002901 2.2e-13 79.3 59 62.7
QL09p012554 Quercus lobata HOM05D002720 ORTHO05D002901 2.9e-13 79.0 59 59.3
Carub.0007s2754 Capsella rubella HOM05D002720 ORTHO05D002901 3.8e-13 78.6 60 60.0
Duzib114G0436 Durio zibethinus HOM05D002720 ORTHO05D002901 3.8e-13 78.6 59 61.0
Eucgr.H03255 Eucalyptus grandis HOM05D002720 ORTHO05D002901 3.8e-13 78.6 59 59.3
Eucgr.L02850 Eucalyptus grandis HOM05D002720 ORTHO05D002901 3.8e-13 78.6 59 59.3
Gohir.A05G283100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 6.5e-13 77.8 59 61.0
Gohir.D05G284100 Gossypium hirsutum HOM05D002720 ORTHO05D002901 6.5e-13 77.8 59 61.0
Gorai.009G298700 Gossypium raimondii HOM05D002720 ORTHO05D002901 6.5e-13 77.8 59 61.0
RcHm_v2.0_Chr4g0390271 Rosa chinensis HOM05D002720 ORTHO05D002901 6.5e-13 77.8 59 59.3
Atru.chr4.2236 Acer truncatum HOM05D002720 ORTHO05D002901 8.5e-13 77.4 59 61.0
AL7G41430 Arabidopsis lyrata HOM05D002720 ORTHO05D002901 8.5e-13 77.4 60 60.0
Lalb_Chr06g0169331 Lupinus albus HOM05D002720 ORTHO05D002901 8.5e-13 77.4 58 63.8
SalBow6G3689 Salvia bowleyana HOM05D002720 ORTHO05D002901 8.5e-13 77.4 59 54.2
SHI00593 Sapria himalayana HOM05D002720 ORTHO05D002901 1.1e-12 77.0 59 57.6
Actinidia04482 Actinidia chinensis HOM05D000264 ORTHO05D000152 1.4e-12 76.6 53 64.2
Eucgr.H03254 Eucalyptus grandis HOM05D002720 ORTHO05D002901 1.4e-12 76.6 59 55.9
BolC1t02790H Brassica oleracea HOM05D002720 ORTHO05D002901 1.9e-12 76.3 60 60.0
Lalb_Chr16g0384831 Lupinus albus HOM05D002720 ORTHO05D002901 1.9e-12 76.3 59 61.0
AT4G14660 Arabidopsis thaliana HOM05D002720 ORTHO05D002901 3.2e-12 75.5 60 56.7
Thhalv10026369m.g Eutrema salsugineum HOM05D002720 ORTHO05D002901 3.2e-12 75.5 60 58.3
Glyma.20G204700 Glycine max HOM05D002720 ORTHO05D002901 3.2e-12 75.5 59 61.0
CARHR221020 Cardamine hirsuta HOM05D002720 ORTHO05D002901 4.2e-12 75.1 58 58.6
CiPaw.12G002900 Carya illinoinensis HOM05D002720 ORTHO05D002901 4.2e-12 75.1 59 62.7
SHI27528 Sapria himalayana HOM05D002720 ORTHO05D002901 4.2e-12 75.1 59 55.9
Prupe.1G030000 Prunus persica HOM05D002720 ORTHO05D002901 5.5e-12 74.7 59 57.6
unitig_899.g14889 Utricularia gibba HOM05D002720 ORTHO05D002901 5.5e-12 74.7 59 55.9
C01p28630 Brassica napus HOM05D002720 ORTHO05D002901 7.2e-12 74.3 60 58.3
COL.COLO4_20716 Corchorus olitorius HOM05D002720 ORTHO05D002901 7.2e-12 74.3 47 70.2
MD16G1207700 Malus domestica HOM05D002720 ORTHO05D002901 7.2e-12 74.3 59 57.6
PGR004G0769 Punica granatum HOM05D002720 ORTHO05D002901 1.2e-11 73.6 59 55.9
BcaC09g50136 Brassica carinata HOM05D002720 ORTHO05D002901 1.6e-11 73.2 60 58.3
Lj5g0020726 Lotus japonicus HOM05D002720 ORTHO05D002901 1.6e-11 73.2 59 55.9
Phvul.L002059 Phaseolus vulgaris HOM05D002720 ORTHO05D002901 1.6e-11 73.2 59 57.6
Sabra10G0031500 Salix brachista HOM05D002720 ORTHO05D002901 1.6e-11 73.2 69 50.7
FvH4_4g12050 Fragaria vesca HOM05D002720 ORTHO05D002901 2.1e-11 72.8 58 55.2
FAN12G1351 Fragaria x ananassa HOM05D002720 ORTHO05D002901 2.1e-11 72.8 59 57.6
FAN12G2103 Fragaria x ananassa HOM05D002720 ORTHO05D002901 2.1e-11 72.8 58 55.2
FAN12G3038 Fragaria x ananassa HOM05D002720 ORTHO05D002901 2.1e-11 72.8 58 55.2
THA.LOC104808579 Tarenaya hassleriana HOM05D002720 ORTHO05D002901 2.7e-11 72.4 61 50.8
Actinidia08293 Actinidia chinensis HOM05D000264 ORTHO05D000152 3.6e-11 72.0 47 66.0
AUR62019525 Chenopodium quinoa HOM05D002720 ORTHO05D002901 3.6e-11 72.0 58 56.9
AUR62036114 Chenopodium quinoa HOM05D002720 ORTHO05D002901 3.6e-11 72.0 58 56.9
Nn1g02586 Nelumbo nucifera HOM05D002720 ORTHO05D002901 3.6e-11 72.0 58 53.4
Ciclev10006012m.g Citrus clementina HOM05D002720 ORTHO05D002901 4.7e-11 71.6 59 55.9
FAN17G1273 Fragaria x ananassa HOM05D002720 ORTHO05D002901 4.7e-11 71.6 58 55.2
Sopen06g014110 Solanum pennellii HOM05D000002 ORTHO05D000001 4.7e-11 71.6 37 89.2
TAR633G1171 Trochodendron aralioides HOM05D002720 ORTHO05D002901 6.1e-11 71.2 59 52.5
VMungo0720G2991 Vigna mungo HOM05D002720 ORTHO05D002901 6.1e-11 71.2 59 52.5
PGR119G0175 Punica granatum HOM05D002720 ORTHO05D002901 7.9e-11 70.9 59 54.2
DCAR_027272 Daucus carota HOM05D002720 ORTHO05D002901 1.0e-10 70.5 58 55.2
FAN07G0794 Fragaria x ananassa HOM05D002720 ORTHO05D002901 1.0e-10 70.5 58 53.4
Nn3g19523 Nelumbo nucifera HOM05D002720 ORTHO05D002901 1.4e-10 70.1 58 53.4
Migut.G00434 Erythranthe guttata HOM05D002720 ORTHO05D002901 1.8e-10 69.7 59 54.2
DCAR_002773 Daucus carota HOM05D002117 ORTHO05D002151 2.3e-10 69.3 58 53.4
EL10Ac9g20857 Beta vulgaris HOM05D002720 ORTHO05D002901 3.0e-10 68.9 58 55.2
PSO339G3626 Papaver somniferum HOM05D002720 ORTHO05D002901 3.9e-10 68.6 58 53.4
PSO384G2822 Papaver somniferum HOM05D002720 ORTHO05D002901 3.9e-10 68.6 58 53.4
TWI73G0137 Tripterygium wilfordii HOM05D002720 ORTHO05D002901 3.9e-10 68.6 56 55.4
Hund05271 Selenicereus undatus HOM05D002720 ORTHO05D002901 5.1e-10 68.2 58 53.4
Cc02_g21580 Coffea canephora HOM05D002720 ORTHO05D002901 6.7e-10 67.8 58 56.9
FvH4_4g02560 Fragaria vesca HOM05D002720 ORTHO05D002901 6.7e-10 67.8 47 63.8
Psat6g128440 Pisum sativum HOM05D002720 ORTHO05D002901 6.7e-10 67.8 61 52.5
Sc19g0003810 Simmondsia chinensis HOM05D002720 ORTHO05D002901 8.8e-10 67.4 58 55.2
Aqoxy5G00329 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 1.1e-09 67.0 58 46.6
MSTRG.9927 Avicennia marina HOM05D002720 ORTHO05D002901 1.1e-09 67.0 59 55.9
Peaxi162Scf00065g00145 Petunia axillaris HOM05D002720 ORTHO05D002901 1.1e-09 67.0 63 55.6
RcHm_v2.0_Chr4g0390261 Rosa chinensis HOM05D002720 ORTHO05D002901 1.5e-09 66.6 60 53.3
Cfa018743 Carpinus fangiana HOM05D002720 ORTHO05D002901 2.0e-09 66.2 59 57.6
Haze_07193 Corylus avellana HOM05D002720 ORTHO05D002901 2.0e-09 66.2 59 57.6
Ca_09830_v3 Cicer arietinum L. HOM05D002720 ORTHO05D002901 2.6e-09 65.9 59 54.2
Medtr1g475140 Medicago truncatula HOM05D002720 ORTHO05D002901 2.6e-09 65.9 59 54.2
SalBow2G1684 Salvia bowleyana HOM05D002720 ORTHO05D002901 2.6e-09 65.9 63 52.4
Ah.09g233110 Amaranthus hybridus HOM05D002720 ORTHO05D002901 3.3e-09 65.5 47 59.6
Aqoxy3G01073 Aquilegia oxysepala HOM05D002720 ORTHO05D002901 5.7e-09 64.7 58 43.1
CARHR098840 Cardamine hirsuta HOM05D002720 ORTHO05D002901 5.7e-09 64.7 58 51.7
CDE09G0699 Ceratophyllum demersum HOM05D002720 ORTHO05D002901 9.7e-09 63.9 59 49.2
COL.COLO4_15784 Corchorus olitorius HOM05D002720 ORTHO05D002901 1.3e-08 63.5 59 44.1
DCAR_024224 Daucus carota HOM05D002492 ORTHO05D002621 1.3e-08 63.5 58 50.0
Prupe.1G029900 Prunus persica HOM05D002720 ORTHO05D002901 1.3e-08 63.5 60 48.3
TPR.G28896 Trifolium pratense HOM05D002720 ORTHO05D002901 1.3e-08 63.5 59 52.5
MBI04_g39240_MAGBIO Magnolia biondii HOM05D002720 ORTHO05D002901 1.7e-08 63.2 58 50.0
COL.COLO4_19737 Corchorus olitorius HOM05D003328 ORTHO05D003722 4.8e-08 61.6 59 45.8
Sc13g0004980 Simmondsia chinensis HOM05D002720 ORTHO05D002901 4.8e-08 61.6 60 46.7
HanXRQChr03g0092471 Helianthus annuus HOM05D002720 ORTHO05D002901 6.3e-08 61.2 59 52.5
Duzib151G0174 Durio zibethinus HOM05D002720 ORTHO05D002901 8.2e-08 60.8 59 39.0
Duzib151G1214 Durio zibethinus HOM05D002720 ORTHO05D002901 1.1e-07 60.5 59 37.3
HanXRQChr13g0424551 Helianthus annuus HOM05D002720 ORTHO05D002901 1.4e-07 60.1 59 54.2
Lsat_1_v5_gn_3_125620 Lactuca sativa HOM05D002720 ORTHO05D002901 1.4e-07 60.1 59 54.2
ATR0665G044 Amborella trichopoda HOM05D002720 ORTHO05D002901 1.8e-07 59.7 59 47.5
Carub.0003s2303 Capsella rubella HOM05D002720 ORTHO05D002901 1.8e-07 59.7 50 54.0
Thecc.04G245600 Theobroma cacao HOM05D002720 ORTHO05D002901 1.8e-07 59.7 59 42.4
AL3G37250 Arabidopsis lyrata HOM05D002720 ORTHO05D002901 2.4e-07 59.3 56 50.0
CANSAT78G0519 Cannabis sativa HOM05D002720 ORTHO05D002901 2.4e-07 59.3 60 45.0
Lj5g0005689 Lotus japonicus HOM05D002720 ORTHO05D002901 2.4e-07 59.3 61 47.5
MD13G1206600 Malus domestica HOM05D002720 ORTHO05D002901 3.1e-07 58.9 63 42.9
Sopen07g013650 Solanum pennellii HOM05D002720 ORTHO05D002901 3.1e-07 58.9 81 45.7
Atru.chr4.2235 Acer truncatum HOM05D002720 ORTHO05D002901 5.3e-07 58.2 64 42.2
Gohir.A09G222701 Gossypium hirsutum HOM05D002720 ORTHO05D002901 7.0e-07 57.8 59 37.3
Gohir.D09G224800 Gossypium hirsutum HOM05D002720 ORTHO05D002901 7.0e-07 57.8 59 37.3
Gorai.006G246300 Gossypium raimondii HOM05D002720 ORTHO05D002901 7.0e-07 57.8 59 37.3
Sopen08g015260 Solanum pennellii HOM05D002720 ORTHO05D002901 9.1e-07 57.4 35 80.0
AT3G22900 Arabidopsis thaliana HOM05D002720 ORTHO05D002901 1.2e-06 57.0 56 46.4
CiPaw.02G116800 Carya illinoinensis HOM05D002720 ORTHO05D002901 1.2e-06 57.0 65 43.1
Os05g0157100 Oryza sativa ssp. japonica HOM05D002720 ORTHO05D002901 1.2e-06 57.0 56 48.2
Os05g0224700 Oryza sativa ssp. japonica HOM05D002720 ORTHO05D002901 1.2e-06 57.0 56 46.4
BraA01t03351Z Brassica rapa HOM05D002720 ORTHO05D002901 2.0e-06 56.2 56 53.6
Migut.G00425 Erythranthe guttata HOM05D002720 ORTHO05D002901 2.0e-06 56.2 59 50.8
Prupe.1G030200 Prunus persica HOM05D002720 ORTHO05D002901 2.6e-06 55.8 62 41.9
ECA240G3546 Erigeron canadensis HOM05D002720 ORTHO05D002901 3.4e-06 55.5 59 50.8
QL06p015591 Quercus lobata HOM05D002720 ORTHO05D002901 3.4e-06 55.5 63 44.4
unitig_899.g14887 Utricularia gibba HOM05D002720 ORTHO05D002901 3.4e-06 55.5 57 49.1
QL05p049332 Quercus lobata HOM05D002720 ORTHO05D002901 4.5e-06 55.1 33 66.7
PSO541G3791 Papaver somniferum HOM05D002720 ORTHO05D002901 5.9e-06 54.7 58 43.1
Nitab4.5_0000525g0180 Nicotiana tabacum HOM05D002720 ORTHO05D002901 7.7e-06 54.3 104 32.7


User provided reference genes

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