Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g008110.4 Solanum lycopersicum HOM05D006183 ORTHO05D007844 0.0e+00 1181.0 629 100.0
Sopen06g002920 Solanum pennellii HOM05D006183 ORTHO05D007844 0.0e+00 1128.2 665 91.7
PGSC0003DMG400014711 Solanum tuberosum HOM05D006183 ORTHO05D007844 0.0e+00 1106.7 666 89.9
Nitab4.5_0009671g0010 Nicotiana tabacum HOM05D006183 ORTHO05D007844 2.7e-296 1021.5 668 83.5
Nitab4.5_0000326g0320 Nicotiana tabacum HOM05D006183 ORTHO05D007844 7.3e-294 1013.4 666 83.6
QL09p042323 Quercus lobata HOM05D006183 ORTHO05D007844 7.6e-259 897.1 662 71.9
Manes.13G038900 Manihot esculenta HOM05D006183 ORTHO05D007844 1.9e-257 892.5 628 73.9
SGA_v2.0_scaffold1G00669 Striga asiatica HOM05D006183 ORTHO05D007844 1.9e-257 892.5 682 72.3
MELO3C012834.2 Cucumis melo HOM05D006183 ORTHO05D007844 1.2e-256 889.8 668 71.0
CsaV3_3G028460 Cucumis sativus L. HOM05D006183 ORTHO05D007844 2.7e-256 888.6 664 71.8
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 7.9e-256 887.1 660 71.8
MSTRG.18360 Avicennia marina HOM05D006183 ORTHO05D007844 1.0e-255 886.7 685 72.4
CSS0020724 Camellia sinensis var. sinensis HOM05D006183 ORTHO05D007844 4.3e-254 881.3 676 72.2
DCAR_018527 Daucus carota HOM05D006183 ORTHO05D007844 9.6e-254 880.2 665 68.9
Rhsim13G0040400 Rhododendron simsii HOM05D006183 ORTHO05D007844 9.6e-254 880.2 678 68.6
Cc01_g17710 Coffea canephora HOM05D006183 ORTHO05D007844 1.3e-253 879.8 673 69.8
Dinv43057 Davidia involucrata HOM05D006183 ORTHO05D007844 3.7e-253 878.2 724 67.3
Peaxi162Scf00499g00067 Petunia axillaris HOM05D006183 ORTHO05D007844 1.1e-252 876.7 659 74.8
Cfa002493 Carpinus fangiana HOM05D006183 ORTHO05D007844 1.8e-252 875.9 675 70.8
vmacro02713 Vaccinium macrocarpon HOM05D006183 ORTHO05D007844 9.0e-252 873.6 673 71.8
CiPaw.04G191000 Carya illinoinensis HOM05D006183 ORTHO05D007844 1.2e-251 873.2 681 70.0
PGR044G1356 Punica granatum HOM05D006183 ORTHO05D007844 2.0e-251 872.5 680 68.4
Lsat_1_v5_gn_5_180141 Lactuca sativa HOM05D006183 ORTHO05D007844 1.0e-250 870.2 660 70.8
arahy.Tifrunner.gnm1.ann1.73B1UV Arachis hypogaea HOM05D006183 ORTHO05D007844 1.7e-250 869.4 662 72.7
ClCG07G001450 Citrullus lanatus HOM05D006183 ORTHO05D007844 3.8e-250 868.2 677 68.8
FAN15G0492 Fragaria x ananassa HOM05D006183 ORTHO05D007844 4.9e-250 867.8 664 69.1
Gorai.001G237200 Gossypium raimondii HOM05D006183 ORTHO05D007844 4.9e-250 867.8 666 70.7
arahy.Tifrunner.gnm1.ann1.P69TYL Arachis hypogaea HOM05D006183 ORTHO05D007844 6.5e-250 867.5 667 72.1
Haze_24717 Corylus avellana HOM05D006183 ORTHO05D007844 6.5e-250 867.5 674 70.9
Migut.D00486 Erythranthe guttata HOM05D006183 ORTHO05D007844 3.2e-249 865.1 680 69.6
Gohir.D07G209800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 2.1e-248 862.4 666 70.0
Prupe.8G213600 Prunus persica HOM05D006183 ORTHO05D007844 4.6e-248 861.3 665 69.0
FvH4_2g20290 Fragaria vesca HOM05D006183 ORTHO05D007844 6.0e-248 860.9 662 69.3
FAN24G0209 Fragaria x ananassa HOM05D006183 ORTHO05D007844 6.0e-248 860.9 662 69.3
Atru.chr5.1959 Acer truncatum HOM05D006183 ORTHO05D007844 7.9e-248 860.5 666 70.6
Thecc.01G248600 Theobroma cacao HOM05D006183 ORTHO05D007844 1.3e-247 859.8 660 67.9
Ca_08753_v3 Cicer arietinum L. HOM05D006183 ORTHO05D007844 2.3e-247 859.0 660 69.7
Hma1.2p1_2051F.1_g312550 Hydrangea macrophylla HOM05D006183 ORTHO05D007844 2.3e-247 859.0 659 69.2
Gohir.A07G203800 Gossypium hirsutum HOM05D006183 ORTHO05D007844 3.9e-247 858.2 662 69.6
VMungo1383G1346 Vigna mungo HOM05D006183 ORTHO05D007844 3.9e-247 858.2 662 69.8
TAR636G3003 Trochodendron aralioides HOM05D006183 ORTHO05D007844 1.1e-246 856.7 681 68.3
Phvul.001G166600 Phaseolus vulgaris HOM05D006183 ORTHO05D007844 1.9e-246 855.9 660 69.1
Sabra14G0143600 Salix brachista HOM05D006183 ORTHO05D007844 9.6e-246 853.6 664 67.9
Sed0027453 Sechium edule HOM05D006183 ORTHO05D007844 2.8e-245 852.0 667 69.3
Glyma.19G169500 Glycine max HOM05D006183 ORTHO05D007844 3.7e-245 851.7 660 68.5
Cpa.g.sc87.44 Carica papaya HOM05D006183 ORTHO05D007844 6.3e-245 850.9 660 67.7
Lj1A75T45 Lonicera japonica HOM05D006183 ORTHO05D007844 6.3e-245 850.9 672 67.7
MD10G1174900 Malus domestica HOM05D006183 ORTHO05D007844 1.1e-244 850.1 664 66.6
ECA248G2561 Erigeron canadensis HOM05D006183 ORTHO05D007844 1.4e-244 849.7 651 71.4
TPR.G20058 Trifolium pratense HOM05D006183 ORTHO05D007844 1.4e-244 849.7 660 69.4
Psat3g051320 Pisum sativum HOM05D006183 ORTHO05D007844 2.4e-244 849.0 660 68.8
RcHm_v2.0_Chr6g0286091 Rosa chinensis HOM05D006183 ORTHO05D007844 5.3e-244 847.8 668 66.9
ATR0751G065 Amborella trichopoda HOM05D006183 ORTHO05D007844 1.0e-242 843.6 668 65.0
Medtr7g098900 Medicago truncatula HOM05D006183 ORTHO05D007844 1.4e-241 839.7 667 66.0
SalBow4G1671 Salvia bowleyana HOM05D006183 ORTHO05D007844 1.4e-241 839.7 741 65.2
Hund18298 Selenicereus undatus HOM05D006183 ORTHO05D007844 1.9e-241 839.3 659 69.2
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 2.5e-241 839.0 666 68.8
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 9.3e-241 837.0 660 67.7
Potri.014G193500 Populus trichocarpa HOM05D006183 ORTHO05D007844 3.0e-239 832.0 668 70.1
Sc17g0002990 Simmondsia chinensis HOM05D006183 ORTHO05D007844 6.7e-239 830.9 662 66.5
Eucgr.K01415 Eucalyptus grandis HOM05D006183 ORTHO05D007844 4.3e-238 828.2 697 67.1
Ciclev10019299m.g Citrus clementina HOM05D006183 ORTHO05D007844 5.7e-238 827.8 660 67.9
GSVIVG01028442001 Vitis vinifera HOM05D006183 ORTHO05D007844 1.6e-237 826.2 485 82.3
PSO210G4577 Papaver somniferum HOM05D006183 ORTHO05D007844 3.1e-236 822.0 658 67.3
EL10Ac7g17706 Beta vulgaris HOM05D006183 ORTHO05D007844 2.0e-235 819.3 664 66.4
HanXRQChr03g0066991 Helianthus annuus HOM05D006183 ORTHO05D007844 1.7e-234 816.2 663 67.7
AL3G53280 Arabidopsis lyrata HOM05D006183 ORTHO05D007844 6.1e-232 807.7 666 68.3
THA.LOC104814536 Tarenaya hassleriana HOM05D006183 ORTHO05D007844 1.4e-231 806.6 671 65.6
Sp3g33570 Schrenkiella parvula HOM05D006183 ORTHO05D007844 3.9e-231 805.1 667 65.4
Oeu015440.1 Olea europaea HOM05D006183 ORTHO05D007844 5.1e-231 804.7 718 63.4
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 8.8e-231 803.9 666 65.5
BcaB03g16820 Brassica carinata HOM05D006183 ORTHO05D007844 1.3e-229 800.0 660 66.8
CARHR110860 Cardamine hirsuta HOM05D006183 ORTHO05D007844 2.6e-227 792.3 661 67.8
Aa31LG8G17320 Aethionema arabicum HOM05D006183 ORTHO05D007844 5.9e-227 791.2 651 65.0
Lalb_Chr20g0113511 Lupinus albus HOM05D006183 ORTHO05D007844 7.7e-227 790.8 658 63.2
A07p00380 Brassica napus HOM05D006183 ORTHO05D007844 1.3e-226 790.0 660 65.5
BraA07t27830Z Brassica rapa HOM05D006183 ORTHO05D007844 3.8e-226 788.5 660 65.6
SEGI_33423 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 8.5e-226 787.3 693 62.0
AT2G20330 Arabidopsis thaliana HOM05D006183 ORTHO05D007844 1.1e-225 786.9 664 64.3
BcaC06g36716 Brassica carinata HOM05D006183 ORTHO05D007844 1.4e-225 786.6 661 65.2
BolC7t40519H Brassica oleracea HOM05D006183 ORTHO05D007844 1.4e-225 786.6 661 65.2
CDE02G0751 Ceratophyllum demersum HOM05D006183 ORTHO05D007844 2.5e-225 785.8 630 66.5
Carub.0003s3467 Capsella rubella HOM05D006183 ORTHO05D007844 4.2e-225 785.0 667 67.2
AUR62008815 Chenopodium quinoa HOM05D006183 ORTHO05D007844 9.4e-225 783.9 661 61.0
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 6.1e-224 781.2 489 76.3
SHI26778 Sapria himalayana HOM05D006183 ORTHO05D007844 3.0e-223 778.9 664 64.6
Zm00001eb222270 Zea mays HOM05D006183 ORTHO05D007844 9.7e-222 773.9 482 76.8
MBI10_g16795_MAGBIO Magnolia biondii HOM05D006183 ORTHO05D007844 1.3e-221 773.5 852 52.1
C07p00800 Brassica napus HOM05D006183 ORTHO05D007844 1.4e-220 770.0 657 63.8
Lj1A75T44 Lonicera japonica HOM05D006183 ORTHO05D007844 1.5e-217 760.0 621 66.5
AUR62025425 Chenopodium quinoa HOM05D006183 ORTHO05D007844 2.7e-216 755.7 670 59.9
HPP92_025390 Vanilla planifolia HOM05D006183 ORTHO05D007844 4.7e-216 755.0 602 64.0
FAN27G0957 Fragaria x ananassa HOM05D006183 ORTHO05D007844 1.9e-209 733.0 443 77.9
AagrBONN_evm.TU.Sc2ySwM_228.230 Anthoceros agrestis HOM05D006183 ORTHO05D007844 3.0e-207 725.7 661 57.5
COL.COLO4_20954 Corchorus olitorius HOM05D006183 ORTHO05D007844 5.9e-203 711.4 673 58.2
Actinidia37559 Actinidia chinensis HOM05D006183 ORTHO05D007844 6.5e-202 708.0 565 70.4
Mapoly0020s0160 Marchantia polymorpha HOM05D006183 ORTHO05D007844 1.9e-180 636.7 675 55.0
CBR_g29722 Chara braunii HOM05D006183 ORTHO05D007844 1.7e-178 630.2 501 62.3
SMO117G0187 Selaginella moellendorffii HOM05D006183 ORTHO05D007844 1.1e-177 627.5 655 52.7
Pp3c3_26410 Physcomitrium patens HOM05D006183 ORTHO05D007844 3.6e-176 622.5 673 54.1
Actinidia30118 Actinidia chinensis HOM05D006183 ORTHO05D007844 4.1e-172 609.0 648 56.3
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 6.7e-146 521.9 423 70.0
SEGI_26680 Sequoiadendron giganteum HOM05D006183 ORTHO05D007844 9.9e-142 508.1 542 54.4
MD05G1186900 Malus domestica HOM05D006183 ORTHO05D007844 7.4e-137 491.9 557 51.0
Cre04.g217750 Chlamydomonas reinhardtii HOM05D006183 ORTHO05D007844 9.4e-116 421.8 515 44.9
unitig_22.g6309 Utricularia gibba HOM05D006183 ORTHO05D007844 1.3e-109 401.4 386 59.6
MCO16G174 Micromonas commoda HOM05D006183 ORTHO05D007844 1.2e-102 378.3 495 43.0
BcaNung04798 Brassica carinata HOM05D006183 ORTHO05D007844 1.4e-95 354.8 286 64.0
C09p15190 Brassica napus HOM05D006183 ORTHO05D007844 1.4e-95 354.8 286 64.0
BolC9t54425H Brassica oleracea HOM05D006183 ORTHO05D007844 1.4e-95 354.8 286 64.0
Rhsim08G0025400 Rhododendron simsii HOM05D006183 ORTHO05D007844 2.2e-88 330.9 345 52.8
AagrBONN_evm.TU.Sc2ySwM_117.1688 Anthoceros agrestis HOM05D006183 ORTHO05D007844 2.0e-73 281.2 166 79.5
PRCOL_00006356 Prasinoderma coloniale HOM05D006183 ORTHO05D007844 1.5e-57 228.4 539 34.0
unitig_22.g6310 Utricularia gibba HOM05D006183 ORTHO05D007844 2.7e-54 217.6 109 90.8
SHI26811 Sapria himalayana HOM05D006183 ORTHO05D007844 8.6e-53 212.6 321 43.0
Cfa024676 Carpinus fangiana HOM05D006183 ORTHO05D007844 5.6e-52 209.9 484 31.4
AagrBONN_evm.TU.Sc2ySwM_117.1686 Anthoceros agrestis HOM05D006183 ORTHO05D007844 1.6e-38 165.2 106 73.6
RcHm_v2.0_Chr6g0286201 Rosa chinensis HOM05D006183 ORTHO05D007844 2.3e-29 134.8 86 75.6
QL09p042264 Quercus lobata HOM05D006183 ORTHO05D007844 1.9e-12 78.6 220 34.5
HanXRQChr13g0404811 Helianthus annuus HOM05D006183 ORTHO05D007844 3.3e-12 77.8 60 60.0
Dinv36951 Davidia involucrata HOM05D006183 ORTHO05D007844 4.3e-12 77.4 59 67.8
HanXRQChr14g0442591 Helianthus annuus HOM05D006183 ORTHO05D007844 5.7e-12 77.0 60 58.3
BcaB07g31601 Brassica carinata HOM05D006183 ORTHO05D007844 3.1e-10 71.2 44 77.3
HPP92_028272 Vanilla planifolia HOM05D006183 ORTHO05D007844 2.0e-09 68.6 39 74.4
Psat6g019720 Pisum sativum HOM05D003913 ORTHO05D004803 5.9e-09 67.0 189 29.6
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 5.0e-08 63.9 214 28.0
Psat6g188560 Pisum sativum HOM05D000168 ORTHO05D004803 1.4e-07 62.4 224 26.8
Zm00001eb326820 Zea mays HOM05D005508 ORTHO05D006882 1.2e-06 59.3 236 25.0
C07p31890 Brassica napus HOM05D000992 ORTHO05D001928 4.6e-06 57.4 235 23.8
SEGI_06199 Sequoiadendron giganteum HOM05D005323 ORTHO05D006820 4.6e-06 57.4 108 28.7
BcaB05g22415 Brassica carinata HOM05D000347 ORTHO05D001997 6.1e-06 57.0 216 24.1
MBI16_g15538_MAGBIO Magnolia biondii HOM05D005280 ORTHO05D006253 6.1e-06 57.0 174 24.1
Oeu052089.1 Olea europaea HOM05D000700 ORTHO05D000397 6.1e-06 57.0 93 38.7
MSTRG.9861 Avicennia marina HOM05D003335 ORTHO05D003853 7.9e-06 56.6 265 24.5
Migut.N03056 Erythranthe guttata HOM05D005323 ORTHO05D006820 7.9e-06 56.6 108 28.7
Migut.O00692 Erythranthe guttata HOM05D005323 ORTHO05D006820 7.9e-06 56.6 108 28.7
TPR.G24009 Trifolium pratense HOM05D003335 ORTHO05D003853 7.9e-06 56.6 265 22.6


User provided reference genes

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