Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g015210.4 Solanum lycopersicum HOM05D005380 ORTHO05D006601 8.3e-252 873.2 444 100.0
Sopen05g010460 Solanum pennellii HOM05D005380 ORTHO05D006601 9.2e-227 790.0 407 98.5
CAN.G890.49 Capsicum annuum HOM05D005380 ORTHO05D006601 9.6e-208 726.9 407 90.9
Nitab4.5_0002174g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 9.0e-198 693.7 412 87.6
Nitab4.5_0005179g0030 Nicotiana tabacum HOM05D005380 ORTHO05D006601 1.0e-193 680.2 412 86.4
Peaxi162Scf00128g01143 Petunia axillaris HOM05D005380 ORTHO05D006601 2.8e-191 672.2 414 84.5
Dinv01434 Davidia involucrata HOM05D005380 ORTHO05D006601 1.1e-174 617.1 407 77.6
Hma1.2p1_1380F.1_g279310 Hydrangea macrophylla HOM05D005380 ORTHO05D006601 8.5e-164 580.9 407 73.2
Cc09_g06540 Coffea canephora HOM05D005380 ORTHO05D006601 2.5e-163 579.3 405 73.3
GSVIVG01013627001 Vitis vinifera HOM05D005380 ORTHO05D006601 2.1e-162 576.2 407 73.5
Migut.M01950 Erythranthe guttata HOM05D005380 ORTHO05D006601 2.6e-160 569.3 409 72.1
Potri.003G148700 Populus trichocarpa HOM05D005380 ORTHO05D006601 2.2e-159 566.2 405 71.4
CSS0002209 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 1.4e-158 563.5 407 72.2
QL11p017903 Quercus lobata HOM05D005380 ORTHO05D006601 1.4e-158 563.5 409 70.7
Manes.11G052180 Manihot esculenta HOM05D005380 ORTHO05D006601 4.1e-158 562.0 407 72.0
Nn1g01426 Nelumbo nucifera HOM05D005380 ORTHO05D006601 4.1e-158 562.0 407 70.8
Prupe.4G105500 Prunus persica HOM05D005380 ORTHO05D006601 5.3e-158 561.6 407 71.3
RcHm_v2.0_Chr5g0019211 Rosa chinensis HOM05D005380 ORTHO05D006601 9.1e-158 560.8 407 70.5
Rhsim13G0198600 Rhododendron simsii HOM05D005380 ORTHO05D006601 1.2e-157 560.5 408 70.3
CiPaw.10G065000 Carya illinoinensis HOM05D005380 ORTHO05D006601 2.7e-157 559.3 407 71.0
Manes.16G057200 Manihot esculenta HOM05D005380 ORTHO05D006601 4.5e-157 558.5 407 71.7
FvH4_3g11790 Fragaria vesca HOM05D005380 ORTHO05D006601 5.9e-157 558.1 407 70.3
MD10G1238900 Malus domestica HOM05D005380 ORTHO05D006601 7.7e-157 557.8 407 70.3
Potri.001G081900 Populus trichocarpa HOM05D005380 ORTHO05D006601 1.0e-156 557.4 407 70.5
Cfa000719 Carpinus fangiana HOM05D005380 ORTHO05D006601 1.7e-156 556.6 405 71.6
FAN16G1170 Fragaria x ananassa HOM05D005380 ORTHO05D006601 5.0e-156 555.1 407 70.3
Thecc.06G135400 Theobroma cacao HOM05D005380 ORTHO05D006601 6.5e-156 554.7 407 70.8
MSTRG.12176 Avicennia marina HOM05D005380 ORTHO05D006601 8.5e-156 554.3 409 69.9
COL.COLO4_30926 Corchorus olitorius HOM05D005380 ORTHO05D006601 8.5e-156 554.3 408 71.3
FAN21G3255 Fragaria x ananassa HOM05D005380 ORTHO05D006601 8.5e-156 554.3 407 70.0
TAR365G0677 Trochodendron aralioides HOM05D005380 ORTHO05D006601 1.5e-155 553.5 407 70.5
Atru.chr10.626 Acer truncatum HOM05D005380 ORTHO05D006601 1.9e-155 553.1 407 70.5
Sabra03G0108200 Salix brachista HOM05D005380 ORTHO05D006601 1.9e-155 553.1 405 70.1
Atru.chr10.630_Atru.chr10.631 Acer truncatum HOM05D005380 ORTHO05D006601 2.5e-155 552.7 407 70.5
DCAR_003768 Daucus carota HOM05D005380 ORTHO05D006601 9.4e-155 550.8 408 68.9
Medtr8g012560 Medicago truncatula HOM05D005380 ORTHO05D006601 9.4e-155 550.8 407 70.3
Duzib192G0856 Durio zibethinus HOM05D005380 ORTHO05D006601 1.2e-154 550.4 407 71.0
Ciclev10014143m.g Citrus clementina HOM05D005380 ORTHO05D006601 2.1e-154 549.7 407 71.5
TPR.G31565 Trifolium pratense HOM05D005380 ORTHO05D006601 3.6e-154 548.9 407 69.8
CANSAT80G1059 Cannabis sativa HOM05D005380 ORTHO05D006601 4.7e-154 548.5 407 68.8
Ca_23214_v3 Cicer arietinum L. HOM05D005380 ORTHO05D006601 4.7e-154 548.5 407 69.3
FAN25G3771 Fragaria x ananassa HOM05D005380 ORTHO05D006601 3.0e-153 545.8 410 69.0
TWI09G1549 Tripterygium wilfordii HOM05D005380 ORTHO05D006601 5.2e-153 545.0 407 69.8
MBI10_g16336_MAGBIO Magnolia biondii HOM05D005380 ORTHO05D006601 6.8e-153 544.7 407 69.0
Duzib235G1486 Durio zibethinus HOM05D005380 ORTHO05D006601 8.8e-153 544.3 404 69.8
Lalb_Chr07g0194321 Lupinus albus HOM05D005380 ORTHO05D006601 3.4e-152 542.3 407 68.8
Eucgr.E02010 Eucalyptus grandis HOM05D005380 ORTHO05D006601 4.4e-152 542.0 406 70.2
Haze_06032 Corylus avellana HOM05D005380 ORTHO05D006601 5.7e-152 541.6 426 67.1
Gorai.011G051400 Gossypium raimondii HOM05D005380 ORTHO05D006601 9.8e-152 540.8 407 69.0
Lsat_1_v5_gn_4_38401 Lactuca sativa HOM05D005380 ORTHO05D006601 9.8e-152 540.8 407 69.0
Gohir.D10G048301 Gossypium hirsutum HOM05D005380 ORTHO05D006601 2.8e-151 539.3 407 68.8
VMungo0331G1684 Vigna mungo HOM05D005380 ORTHO05D006601 1.1e-150 537.3 407 68.3
Glyma.03G103900 Glycine max HOM05D005380 ORTHO05D006601 1.8e-150 536.6 407 68.1
MD05G1259300 Malus domestica HOM05D005380 ORTHO05D006601 1.8e-150 536.6 460 63.3
Phvul.010G053600 Phaseolus vulgaris HOM05D005380 ORTHO05D006601 1.8e-150 536.6 407 68.3
PGR083G1975 Punica granatum HOM05D005380 ORTHO05D006601 1.8e-150 536.6 406 69.2
Sc10g0009350 Simmondsia chinensis HOM05D005380 ORTHO05D006601 5.4e-150 535.0 407 68.3
Glyma.07G119900 Glycine max HOM05D005380 ORTHO05D006601 1.6e-149 533.5 407 68.3
Oeu000486.1 Olea europaea HOM05D005380 ORTHO05D006601 2.0e-149 533.1 390 70.5
Lj3g0005152 Lotus japonicus HOM05D005380 ORTHO05D006601 4.5e-149 531.9 407 68.1
HanXRQChr14g0457361 Helianthus annuus HOM05D005380 ORTHO05D006601 2.3e-148 529.6 407 67.8
SGA_v2.0_scaffold223G42899 Striga asiatica HOM05D005380 ORTHO05D006601 2.3e-148 529.6 408 66.9
arahy.Tifrunner.gnm1.ann1.UEF6CF Arachis hypogaea HOM05D005380 ORTHO05D006601 3.8e-148 528.9 407 67.8
ECA247G3537 Erigeron canadensis HOM05D005380 ORTHO05D006601 3.8e-148 528.9 407 68.1
arahy.Tifrunner.gnm1.ann1.GT0B0E Arachis hypogaea HOM05D005380 ORTHO05D006601 5.0e-148 528.5 410 67.6
ECA234G0325 Erigeron canadensis HOM05D005380 ORTHO05D006601 5.0e-148 528.5 407 67.8
Psat4g204440 Pisum sativum HOM05D005380 ORTHO05D006601 6.6e-148 528.1 421 66.7
Hund06739 Selenicereus undatus HOM05D005380 ORTHO05D006601 8.6e-148 527.7 406 65.8
AUR62042012 Chenopodium quinoa HOM05D005380 ORTHO05D006601 7.2e-147 524.6 406 66.5
vmacro04057 Vaccinium macrocarpon HOM05D005380 ORTHO05D006601 1.2e-144 517.3 510 56.7
CsaV3_1G046710 Cucumis sativus L. HOM05D005380 ORTHO05D006601 8.3e-143 511.1 407 64.6
MELO3C021785.2 Cucumis melo HOM05D005380 ORTHO05D006601 1.8e-142 510.0 407 63.9
PSO170G0871 Papaver somniferum HOM05D005380 ORTHO05D006601 7.0e-142 508.1 407 64.6
PSO357G0674 Papaver somniferum HOM05D005380 ORTHO05D006601 2.7e-141 506.1 407 64.1
THA.LOC104810347 Tarenaya hassleriana HOM05D005380 ORTHO05D006601 1.0e-140 504.2 407 65.4
Aqoxy5G03588 Aquilegia oxysepala HOM05D005380 ORTHO05D006601 2.3e-140 503.1 406 65.3
Thhalv10006692m.g Eutrema salsugineum HOM05D005380 ORTHO05D006601 5.0e-140 501.9 406 64.0
Sed0014613 Sechium edule HOM05D005380 ORTHO05D006601 5.0e-140 501.9 407 63.1
BraA09t39678Z Brassica rapa HOM05D005380 ORTHO05D006601 1.9e-139 500.0 406 64.5
A09p41900 Brassica napus HOM05D005380 ORTHO05D006601 5.6e-139 498.4 406 64.5
BolC5t30892H Brassica oleracea HOM05D003679 ORTHO05D004265 5.6e-139 498.4 406 64.3
Sp1g20340 Schrenkiella parvula HOM05D005380 ORTHO05D006601 5.6e-139 498.4 406 64.0
BcaB07g32281 Brassica carinata HOM05D005380 ORTHO05D006601 9.5e-139 497.7 406 64.3
CSS0007558 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 9.5e-139 497.7 407 66.3
ATR0743G092 Amborella trichopoda HOM05D005380 ORTHO05D006601 1.2e-138 497.3 400 64.5
BcaC05g26192 Brassica carinata HOM05D005380 ORTHO05D006601 1.2e-138 497.3 406 64.0
Ah.14g085840 Amaranthus hybridus HOM05D005380 ORTHO05D006601 8.0e-138 494.6 439 59.9
C05p21950 Brassica napus HOM05D005380 ORTHO05D006601 1.0e-137 494.2 406 63.8
Carub.0001s2236 Capsella rubella HOM05D005380 ORTHO05D006601 3.1e-137 492.7 408 62.7
AT1G22860 Arabidopsis thaliana HOM05D005380 ORTHO05D006601 5.8e-136 488.4 406 61.8
Os05g0104100 Oryza sativa ssp. japonica HOM05D005380 ORTHO05D006601 1.1e-134 484.2 409 61.6
AL1G36400 Arabidopsis lyrata HOM05D005380 ORTHO05D006601 2.4e-134 483.0 407 61.7
CARHR023210 Cardamine hirsuta HOM05D005380 ORTHO05D006601 2.4e-134 483.0 406 61.6
Aa31LG7G6850 Aethionema arabicum HOM05D005380 ORTHO05D006601 2.0e-133 479.9 420 61.0
HPP92_023728 Vanilla planifolia HOM05D005380 ORTHO05D006601 2.0e-133 479.9 406 61.6
Zm00001eb267510 Zea mays HOM05D005380 ORTHO05D006601 1.6e-130 470.3 406 60.8
CDE02G1822 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 1.2e-128 464.2 409 60.9
EL10Ac8g19470 Beta vulgaris HOM05D005380 ORTHO05D006601 2.6e-128 463.0 407 60.9
AUR62043348 Chenopodium quinoa HOM05D005380 ORTHO05D006601 1.4e-126 457.2 406 59.6
ClCG01G008980 Citrullus lanatus HOM05D005380 ORTHO05D006601 1.2e-120 437.6 410 56.8
SalBow8G2602 Salvia bowleyana HOM05D005380 ORTHO05D006601 5.8e-120 435.3 297 73.7
SalBow8G4959 Salvia bowleyana HOM05D005380 ORTHO05D006601 5.8e-120 435.3 297 73.7
CSS0038991 Camellia sinensis var. sinensis HOM05D005380 ORTHO05D006601 5.4e-110 402.1 251 79.7
unitig_747.g21990 Utricularia gibba HOM05D005380 ORTHO05D006601 9.3e-110 401.4 380 58.2
SEGI_33229 Sequoiadendron giganteum HOM05D005380 ORTHO05D006601 1.3e-106 391.0 389 53.7
QL05p013204 Quercus lobata HOM05D005380 ORTHO05D006601 9.3e-86 321.6 229 69.4
BcaNung06594 Brassica carinata HOM05D005380 ORTHO05D006601 2.5e-83 313.5 405 49.6
CDE04G2683 Ceratophyllum demersum HOM05D005380 ORTHO05D006601 8.4e-79 298.5 320 54.7
Mapoly0029s0138 Marchantia polymorpha HOM05D005380 ORTHO05D006601 4.8e-74 282.7 375 42.9
Pp3c6_25240 Physcomitrium patens HOM05D005380 ORTHO05D006601 5.9e-72 275.8 418 38.0
Lj1A1141T72 Lonicera japonica HOM05D005380 ORTHO05D006601 9.4e-70 268.5 157 82.2
AagrBONN_evm.TU.Sc2ySwM_362.853 Anthoceros agrestis HOM05D005380 ORTHO05D006601 2.4e-57 227.3 400 36.5
Actinidia12893 Actinidia chinensis HOM05D005380 ORTHO05D006601 6.7e-52 209.1 229 53.3
Lj1A1141T73 Lonicera japonica HOM05D005380 ORTHO05D006601 7.4e-51 205.7 179 63.1
CBR_g10913 Chara braunii HOM05D005380 ORTHO05D006601 4.7e-45 186.4 397 33.8
SMO146G0159 Selaginella moellendorffii HOM05D005380 ORTHO05D006601 4.7e-37 159.8 372 30.9
QL05p013201 Quercus lobata HOM05D005380 ORTHO05D006601 7.7e-32 142.5 117 65.8
Cpa.g.sc21.92 Carica papaya HOM05D005380 ORTHO05D006601 1.9e-30 137.9 72 84.7
Cpa.g.sc21.91 Carica papaya HOM05D005380 ORTHO05D006601 4.2e-30 136.7 120 62.5
QL10p043084 Quercus lobata HOM05D005380 ORTHO05D006601 1.4e-25 121.7 76 75.0
Actinidia22434 Actinidia chinensis HOM05D002462 ORTHO05D002893 7.0e-25 119.4 78 75.6
Actinidia22453 Actinidia chinensis HOM05D005380 ORTHO05D006601 2.7e-24 117.5 78 74.4
QL10p044954 Quercus lobata HOM05D004535 ORTHO05D005341 2.3e-23 114.4 138 47.8
QL09p040316 Quercus lobata HOM05D005380 ORTHO05D006601 8.9e-20 102.4 66 74.2
Actinidia22440 Actinidia chinensis HOM05D005380 ORTHO05D006601 6.0e-16 89.7 60 73.3
Cpa.g.sc21.90 Carica papaya HOM05D005380 ORTHO05D006601 6.2e-13 79.7 88 55.7
arahy.Tifrunner.gnm1.ann1.BZI3ML Arachis hypogaea HOM05D005380 ORTHO05D006601 1.1e-06 58.9 89 41.6


User provided reference genes

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