Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc04g054700.3 Solanum lycopersicum HOM05D006124 ORTHO05D007854 1.7e-246 855.5 415 100.0
Nitab4.5_0000214g0090 Nicotiana tabacum HOM05D006124 ORTHO05D007854 6.6e-235 817.0 416 95.2
CAN.G219.5 Capsicum annuum HOM05D006124 ORTHO05D007854 1.8e-232 808.9 416 95.0
Nitab4.5_0004386g0010 Nicotiana tabacum HOM05D006124 ORTHO05D007854 6.4e-230 800.4 414 94.7
Peaxi162Scf00876g00022 Petunia axillaris HOM05D006124 ORTHO05D007854 3.9e-227 791.2 416 92.5
Peaxi162Scf00272g00827 Petunia axillaris HOM05D006124 ORTHO05D007854 6.6e-227 790.4 416 92.3
Cc01_g01430 Coffea canephora HOM05D006124 ORTHO05D007854 2.2e-206 722.2 420 83.6
Migut.D02195 Erythranthe guttata HOM05D006124 ORTHO05D007854 4.3e-202 708.0 412 82.8
MSTRG.21138 Avicennia marina HOM05D006124 ORTHO05D007854 6.2e-201 704.1 410 83.4
Dinv30520 Davidia involucrata HOM05D006124 ORTHO05D007854 1.4e-197 693.0 421 81.0
Rhsim08G0043400 Rhododendron simsii HOM05D006124 ORTHO05D007854 4.2e-197 691.4 419 80.4
CSS0017090 Camellia sinensis var. sinensis HOM05D006124 ORTHO05D007854 9.3e-197 690.3 428 79.0
Hma1.2p1_0002F.1_g001970 Hydrangea macrophylla HOM05D006124 ORTHO05D007854 1.2e-196 689.9 424 79.7
Actinidia07118 Actinidia chinensis HOM05D006124 ORTHO05D007854 1.8e-195 686.0 399 82.0
QL01p023235 Quercus lobata HOM05D006124 ORTHO05D007854 7.4e-194 680.6 421 78.4
Sopen04g024450 Solanum pennellii HOM05D006124 ORTHO05D007854 7.4e-194 680.6 324 99.1
Duzib150G0641 Durio zibethinus HOM05D006124 ORTHO05D007854 4.8e-193 677.9 398 80.7
vmacro03179 Vaccinium macrocarpon HOM05D006124 ORTHO05D007854 6.3e-193 677.6 419 79.0
Cfa012640 Carpinus fangiana HOM05D006124 ORTHO05D007854 8.2e-193 677.2 422 78.0
SGA_v2.0_scaffold61G21160 Striga asiatica HOM05D006124 ORTHO05D007854 8.2e-193 677.2 435 76.6
Cpa.g.sc139.77 Carica papaya HOM05D006124 ORTHO05D007854 4.1e-192 674.9 424 78.3
HanXRQChr02g0055911 Helianthus annuus HOM05D006124 ORTHO05D007854 5.3e-192 674.5 415 77.8
CANSAT54G1697 Cannabis sativa HOM05D006124 ORTHO05D007854 6.9e-192 674.1 419 76.8
Haze_08019 Corylus avellana HOM05D006124 ORTHO05D007854 1.2e-191 673.3 429 76.5
FAN25G1144 Fragaria x ananassa HOM05D006124 ORTHO05D007854 3.4e-191 671.8 410 78.5
Lsat_1_v5_gn_6_46340 Lactuca sativa HOM05D006124 ORTHO05D007854 7.6e-191 670.6 397 80.1
Ciclev10005033m.g Citrus clementina HOM05D006124 ORTHO05D007854 1.0e-190 670.2 417 77.9
GSVIVG01025154001 Vitis vinifera HOM05D006124 ORTHO05D007854 1.3e-190 669.8 401 80.3
RcHm_v2.0_Chr5g0060301 Rosa chinensis HOM05D006124 ORTHO05D007854 1.7e-190 669.5 410 78.0
Prupe.6G097100 Prunus persica HOM05D006124 ORTHO05D007854 2.2e-190 669.1 411 78.1
FAN21G3497 Fragaria x ananassa HOM05D006124 ORTHO05D007854 3.8e-190 668.3 410 78.3
FvH4_3g32970 Fragaria vesca HOM05D006124 ORTHO05D007854 5.0e-190 667.9 410 77.8
FAN11G0357 Fragaria x ananassa HOM05D006124 ORTHO05D007854 1.1e-189 666.8 410 77.6
MD03G1112800 Malus domestica HOM05D006124 ORTHO05D007854 4.2e-189 664.8 411 77.6
Thecc.09G259100 Theobroma cacao HOM05D006124 ORTHO05D007854 5.5e-189 664.5 390 81.0
MBI18_g17017_MAGBIO Magnolia biondii HOM05D006124 ORTHO05D007854 2.1e-188 662.5 396 79.8
Eucgr.J00945 Eucalyptus grandis HOM05D006124 ORTHO05D007854 7.9e-188 660.6 412 78.2
THA.LOC104801004 Tarenaya hassleriana HOM05D006124 ORTHO05D007854 1.8e-187 659.4 423 75.4
MELO3C005421.2 Cucumis melo HOM05D006124 ORTHO05D007854 3.0e-187 658.7 415 76.9
Aqoxy5G00340 Aquilegia oxysepala HOM05D006124 ORTHO05D007854 5.1e-187 657.9 420 77.1
Sed0018571 Sechium edule HOM05D006124 ORTHO05D007854 8.7e-187 657.1 418 76.1
Gohir.A09G106200 Gossypium hirsutum HOM05D006124 ORTHO05D007854 1.1e-186 656.8 387 79.6
Gorai.006G120700 Gossypium raimondii HOM05D006124 ORTHO05D007854 1.1e-186 656.8 387 79.6
Gohir.D09G102900 Gossypium hirsutum HOM05D006124 ORTHO05D007854 1.5e-186 656.4 400 77.5
ClCG01G004970 Citrullus lanatus HOM05D006124 ORTHO05D007854 2.5e-186 655.6 423 75.9
ECA233G1948 Erigeron canadensis HOM05D006124 ORTHO05D007854 2.5e-186 655.6 390 79.5
unitig_21.g20322 Utricularia gibba HOM05D006124 ORTHO05D007854 3.3e-186 655.2 422 75.4
COL.COLO4_05187 Corchorus olitorius HOM05D006124 ORTHO05D007854 4.3e-186 654.8 393 78.9
Lalb_Chr22g0357551 Lupinus albus HOM05D006124 ORTHO05D007854 4.3e-186 654.8 404 75.5
CsaV3_5G005370 Cucumis sativus L. HOM05D006124 ORTHO05D007854 5.7e-186 654.4 421 75.3
Atru.chr3.3681 Acer truncatum HOM05D006124 ORTHO05D007854 2.2e-185 652.5 417 76.0
Ciclev10011800m.g Citrus clementina HOM05D006124 ORTHO05D007854 2.8e-185 652.1 419 76.6
Manes.04G024500 Manihot esculenta HOM05D006124 ORTHO05D007854 6.3e-185 651.0 411 76.4
Lj1g0025688 Lotus japonicus HOM05D006124 ORTHO05D007854 8.2e-185 650.6 406 74.6
Glyma.19G129000 Glycine max HOM05D006124 ORTHO05D007854 3.1e-184 648.7 415 73.3
Glyma.11G073900 Glycine max HOM05D006124 ORTHO05D007854 9.0e-184 647.1 414 72.7
SalBow3G1513 Salvia bowleyana HOM05D006124 ORTHO05D007854 9.0e-184 647.1 364 87.1
Nn7g36111 Nelumbo nucifera HOM05D006124 ORTHO05D007854 1.2e-183 646.7 390 79.2
Sp1g03920 Schrenkiella parvula HOM05D006124 ORTHO05D007854 2.6e-183 645.6 424 74.3
Ca_08379_v3 Cicer arietinum L. HOM05D006124 ORTHO05D007854 5.9e-183 644.4 406 74.9
PSO541G0641 Papaver somniferum HOM05D006124 ORTHO05D007854 7.7e-183 644.0 420 74.5
PSO384G4530 Papaver somniferum HOM05D006124 ORTHO05D007854 1.0e-182 643.7 420 74.5
Thhalv10007730m.g Eutrema salsugineum HOM05D006124 ORTHO05D007854 1.3e-182 643.3 422 74.6
PSO339G3674 Papaver somniferum HOM05D006124 ORTHO05D007854 8.5e-182 640.6 420 74.3
A08p36590 Brassica napus HOM05D006124 ORTHO05D007854 1.9e-181 639.4 423 73.3
BraA08t35561Z Brassica rapa HOM05D006124 ORTHO05D007854 1.9e-181 639.4 423 73.3
Lalb_Chr14g0365721 Lupinus albus HOM05D006124 ORTHO05D007854 1.9e-181 639.4 407 73.7
CiPaw.05G171100 Carya illinoinensis HOM05D006124 ORTHO05D007854 2.5e-181 639.0 400 76.8
VMungo1383G3228 Vigna mungo HOM05D006124 ORTHO05D007854 2.5e-181 639.0 414 72.2
TPR.G16093 Trifolium pratense HOM05D006124 ORTHO05D007854 3.2e-181 638.6 409 73.3
TWI39G0794 Tripterygium wilfordii HOM05D006124 ORTHO05D007854 3.2e-181 638.6 413 75.3
arahy.Tifrunner.gnm1.ann1.63AZS3 Arachis hypogaea HOM05D006124 ORTHO05D007854 4.2e-181 638.3 417 73.1
AT1G05055 Arabidopsis thaliana HOM05D006124 ORTHO05D007854 7.2e-181 637.5 422 73.7
arahy.Tifrunner.gnm1.ann1.M1WJK6 Arachis hypogaea HOM05D006124 ORTHO05D007854 1.2e-180 636.7 417 73.1
BcaB03g13459 Brassica carinata HOM05D006124 ORTHO05D007854 1.2e-180 636.7 423 72.8
C08p01730 Brassica napus HOM05D006124 ORTHO05D007854 1.6e-180 636.3 423 72.8
BolC8t46973H Brassica oleracea HOM05D006124 ORTHO05D007854 1.6e-180 636.3 423 72.8
Aa31LG1G19730 Aethionema arabicum HOM05D006124 ORTHO05D007854 2.1e-180 636.0 421 74.8
AL1G14800 Arabidopsis lyrata HOM05D006124 ORTHO05D007854 3.6e-180 635.2 422 73.5
Oeu035057.1 Olea europaea HOM05D006124 ORTHO05D007854 3.6e-180 635.2 367 85.6
CARHR004500 Cardamine hirsuta HOM05D006124 ORTHO05D007854 7.9e-180 634.0 423 73.0
Carub.0001s0430 Capsella rubella HOM05D006124 ORTHO05D007854 8.8e-179 630.6 422 72.5
Medtr7g089440 Medicago truncatula HOM05D006124 ORTHO05D007854 2.0e-178 629.4 410 72.4
Potri.004G113700 Populus trichocarpa HOM05D006124 ORTHO05D007854 3.3e-178 628.6 390 76.7
EL10Ac5g12347 Beta vulgaris HOM05D006124 ORTHO05D007854 9.7e-178 627.1 422 72.7
Sabra04G0071700 Salix brachista HOM05D006124 ORTHO05D007854 3.1e-176 622.1 411 74.0
Peaxi162Scf00106g02220 Petunia axillaris HOM05D006124 ORTHO05D007854 2.1e-172 609.4 404 78.0
DCAR_015555 Daucus carota HOM05D006124 ORTHO05D007854 1.4e-171 606.7 347 83.3
Zm00001eb077790 Zea mays HOM05D006124 ORTHO05D007854 7.0e-168 594.3 396 73.2
SEGI_32950 Sequoiadendron giganteum HOM05D006124 ORTHO05D007854 2.6e-167 592.4 407 69.5
Os04g0508900 Oryza sativa ssp. japonica HOM05D006124 ORTHO05D007854 2.9e-166 589.0 396 71.5
PGR119G0371 Punica granatum HOM05D006124 ORTHO05D007854 1.6e-164 583.2 370 77.8
CiPaw.13G108300 Carya illinoinensis HOM05D006124 ORTHO05D007854 1.4e-163 580.1 373 76.1
AUR62021039 Chenopodium quinoa HOM05D006124 ORTHO05D007854 1.1e-160 570.5 348 78.4
AUR62018404 Chenopodium quinoa HOM05D006124 ORTHO05D007854 5.3e-160 568.2 347 78.7
CDE04G2680 Ceratophyllum demersum HOM05D006124 ORTHO05D007854 7.5e-154 547.7 326 80.1
TAR369G0666 Trochodendron aralioides HOM05D006124 ORTHO05D007854 4.8e-153 545.0 335 77.0
Mapoly0005s0033 Marchantia polymorpha HOM05D006124 ORTHO05D007854 1.3e-150 537.0 411 63.0
Pp3c24_6530 Physcomitrium patens HOM05D006124 ORTHO05D007854 8.5e-150 534.3 410 61.5
Peaxi162Scf00876g00023 Petunia axillaris HOM05D006124 ORTHO05D007854 3.2e-149 532.3 293 87.4
Ah.13g077240 Amaranthus hybridus HOM05D006124 ORTHO05D007854 7.2e-149 531.2 320 77.2
Sc06g0010480 Simmondsia chinensis HOM05D006124 ORTHO05D007854 7.2e-149 531.2 320 76.9
MD11G1132000 Malus domestica HOM05D006124 ORTHO05D007854 1.5e-146 523.5 313 78.3
Phvul.001G121400 Phaseolus vulgaris HOM05D006124 ORTHO05D007854 1.7e-145 520.0 313 75.4
SMO141G0040 Selaginella moellendorffii HOM05D006124 ORTHO05D007854 5.4e-144 515.0 392 59.9
ATR0580G285 Amborella trichopoda HOM05D006124 ORTHO05D007854 2.9e-142 509.2 321 72.9
Lj1C682G4 Lonicera japonica HOM05D006124 ORTHO05D007854 8.6e-142 507.7 283 85.5
CBR_g21234 Chara braunii HOM05D006124 ORTHO05D007854 6.1e-140 501.5 404 58.9
PGSC0003DMG401027913 Solanum tuberosum HOM05D006124 ORTHO05D007854 1.9e-128 463.4 241 97.9
CAN.G1136.1 Capsicum annuum HOM05D006124 ORTHO05D007854 6.4e-121 438.3 230 90.9
Psat3g079640 Pisum sativum HOM05D006124 ORTHO05D007854 1.4e-120 437.2 267 76.4
Cre03.g179550 Chlamydomonas reinhardtii HOM05D006124 ORTHO05D007854 1.8e-107 393.7 416 47.1
Solyc08g028693.1 Solanum lycopersicum HOM05D006124 ORTHO05D007854 1.9e-101 373.6 182 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4431 Anthoceros agrestis HOM05D006124 ORTHO05D007854 1.8e-99 367.1 274 60.2
BolC5t29103H Brassica oleracea HOM05D006124 ORTHO05D007854 8.4e-97 358.2 283 64.0
MCO11G183 Micromonas commoda HOM05D006124 ORTHO05D007854 5.6e-93 345.5 421 43.0
Haze_26481 Corylus avellana HOM05D006124 ORTHO05D007854 2.1e-79 300.4 399 41.9
Cfa026643 Carpinus fangiana HOM05D006124 ORTHO05D007854 4.8e-68 262.7 443 34.5
PRCOL_00001395 Prasinoderma coloniale HOM05D006124 ORTHO05D007854 1.7e-65 254.2 357 39.8
Lj1A187G25 Lonicera japonica HOM05D006124 ORTHO05D007854 9.1e-59 231.9 324 42.0
Peaxi162Scf00876g00016 Petunia axillaris HOM05D006124 ORTHO05D007854 9.5e-32 142.1 88 88.6
HPP92_015146 Vanilla planifolia HOM05D006124 ORTHO05D007854 8.8e-30 135.6 83 74.7
Psat6g235520 Pisum sativum HOM05D006124 ORTHO05D001516 4.0e-22 110.2 74 66.2
BcaC09g51580 Brassica carinata HOM05D006124 ORTHO05D007854 2.9e-20 104.0 93 63.4
Lj1A682T15 Lonicera japonica HOM05D006124 ORTHO05D007854 4.6e-18 96.7 54 72.2
ClCG03G002310 Citrullus lanatus HOM05D006124 ORTHO05D150439 1.1e-14 85.5 129 38.8
ECA247G2464 Erigeron canadensis HOM05D011992 ORTHO05D008321 3.1e-14 84.0 88 51.1
HPP92_015147 Vanilla planifolia HOM05D006124 ORTHO05D007854 6.4e-12 76.3 59 67.8
ECA233G1860 Erigeron canadensis HOM05D000013 ORTHO05D000011 2.5e-08 64.3 88 44.3
RcHm_v2.0_Chr5g0060231 Rosa chinensis HOM05D006124 ORTHO05D007854 3.3e-08 63.9 54 55.6


User provided reference genes

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