Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g120280.1 Solanum lycopersicum HOM05D003909 ORTHO05D004478 1.2e-221 773.1 450 100.0
Sopen03g039170 Solanum pennellii HOM05D003909 ORTHO05D004478 1.3e-204 716.5 450 88.7
PGSC0003DMG400002641 Solanum tuberosum HOM05D003909 ORTHO05D004478 5.5e-195 684.5 448 85.9
CAN.G438.59 Capsicum annuum HOM05D003909 ORTHO05D004478 8.3e-175 617.5 450 82.9
Peaxi162Scf00015g10039 Petunia axillaris HOM05D003909 ORTHO05D004478 2.6e-168 595.9 452 79.0
Nitab4.5_0006801g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 5.1e-164 581.6 450 78.7
Nitab4.5_0000671g0020 Nicotiana tabacum HOM05D003909 ORTHO05D004478 6.4e-151 538.1 452 75.2
Nitab4.5_0000351g0150 Nicotiana tabacum HOM05D003909 ORTHO05D004478 9.9e-136 487.6 457 64.6
CAN.G395.16 Capsicum annuum HOM05D003909 ORTHO05D004478 4.2e-134 482.3 455 63.3
Nitab4.5_0002327g0010 Nicotiana tabacum HOM05D003909 ORTHO05D004478 4.6e-133 478.8 454 63.2
Sopen06g025020 Solanum pennellii HOM05D003909 ORTHO05D004478 5.1e-132 475.3 457 63.5
Solyc06g066740.3 Solanum lycopersicum HOM05D003909 ORTHO05D004478 7.1e-126 454.9 457 65.0
Dinv30518 Davidia involucrata HOM05D003909 ORTHO05D004478 1.2e-120 437.6 454 57.9
CSS0044508 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 1.0e-116 424.5 448 61.2
PGSC0003DMG400016510 Solanum tuberosum HOM05D003909 ORTHO05D004478 3.0e-116 422.9 455 59.6
Lj9P507T43 Lonicera japonica HOM05D003909 ORTHO05D004478 3.8e-111 406.0 453 56.7
Lj5C61T11 Lonicera japonica HOM05D003909 ORTHO05D004478 1.6e-109 400.6 453 56.3
Manes.11G048200 Manihot esculenta HOM05D003909 ORTHO05D004478 8.8e-108 394.8 464 56.9
Hma1.2p1_0682F.1_g202710 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 2.8e-106 389.8 453 57.6
Thecc.06G085100 Theobroma cacao HOM05D003909 ORTHO05D004478 8.2e-106 388.3 471 55.4
Dinv38052 Davidia involucrata HOM05D003909 ORTHO05D004478 2.4e-105 386.7 450 55.1
Rhsim12G0197200 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.1e-105 386.3 449 54.3
CSS0004276 Camellia sinensis var. sinensis HOM05D003909 ORTHO05D004478 7.0e-105 385.2 451 55.0
Actinidia01799 Actinidia chinensis HOM05D001315 ORTHO05D001618 4.5e-104 382.5 450 56.9
QL05p024883 Quercus lobata HOM05D003909 ORTHO05D004478 7.7e-104 381.7 451 53.0
QL05p024997 Quercus lobata HOM05D003909 ORTHO05D004478 7.7e-104 381.7 451 53.0
Atru.chr1.3248 Acer truncatum HOM05D003909 ORTHO05D004478 2.2e-103 380.2 477 53.7
Actinidia32764 Actinidia chinensis HOM05D003909 ORTHO05D004478 8.5e-103 378.3 453 56.7
Cc04_g03530 Coffea canephora HOM05D003909 ORTHO05D004478 1.1e-102 377.9 454 52.4
Duzib160G0939 Durio zibethinus HOM05D003909 ORTHO05D004478 5.5e-102 375.6 466 50.9
Actinidia08971 Actinidia chinensis HOM05D003909 ORTHO05D004478 1.2e-101 374.4 449 55.0
MSTRG.22695 Avicennia marina HOM05D003909 ORTHO05D004478 3.0e-100 369.8 484 50.2
MSTRG.4728 Avicennia marina HOM05D003909 ORTHO05D004478 2.0e-99 367.1 458 55.5
CiPaw.01G240200 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.6e-99 366.7 450 51.8
Duzib192G0576 Durio zibethinus HOM05D003909 ORTHO05D004478 4.4e-99 365.9 479 50.5
Prupe.3G072500 Prunus persica HOM05D003909 ORTHO05D004478 1.3e-98 364.4 452 54.9
CiPaw.02G151900 Carya illinoinensis HOM05D003909 ORTHO05D004478 2.2e-98 363.6 451 53.2
Sabra01G0147800 Salix brachista HOM05D003909 ORTHO05D004478 2.2e-98 363.6 510 50.4
COL.COLO4_30356 Corchorus olitorius HOM05D003909 ORTHO05D004478 6.3e-98 362.1 473 53.1
TAR626G0719 Trochodendron aralioides HOM05D003909 ORTHO05D004478 8.2e-98 361.7 456 52.2
Aa31LG8G3120 Aethionema arabicum HOM05D003909 ORTHO05D004478 7.0e-97 358.6 471 50.1
MD09G1214400 Malus domestica HOM05D003909 ORTHO05D004478 1.2e-96 357.8 454 53.1
Eucgr.F02948 Eucalyptus grandis HOM05D003909 ORTHO05D004478 2.6e-96 356.7 463 50.3
Potri.001G179100 Populus trichocarpa HOM05D003909 ORTHO05D004478 5.9e-96 355.5 516 51.4
vmacro18921 Vaccinium macrocarpon HOM05D003909 ORTHO05D004478 5.9e-96 355.5 449 51.9
Manes.04G122500 Manihot esculenta HOM05D003909 ORTHO05D004478 3.8e-95 352.8 466 54.1
TAR383G0140 Trochodendron aralioides HOM05D003909 ORTHO05D004478 1.1e-94 351.3 465 50.5
MD17G1196800 Malus domestica HOM05D003909 ORTHO05D004478 2.5e-94 350.1 455 54.9
TAR636G1173 Trochodendron aralioides HOM05D003909 ORTHO05D004478 3.2e-94 349.7 463 51.2
Haze_16447 Corylus avellana HOM05D003909 ORTHO05D004478 7.2e-94 348.6 456 51.3
MELO3C024224.2 Cucumis melo HOM05D003909 ORTHO05D004478 7.2e-94 348.6 489 51.1
Cfa002057 Carpinus fangiana HOM05D003909 ORTHO05D004478 1.2e-93 347.8 458 50.4
Aqoxy7G01805 Aquilegia oxysepala HOM05D003909 ORTHO05D004478 1.6e-93 347.4 455 51.0
CsaV3_7G033090 Cucumis sativus L. HOM05D003909 ORTHO05D004478 2.1e-93 347.1 489 49.9
THA.LOC104810518 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 3.6e-93 346.3 465 54.2
Ciclev10025626m.g Citrus clementina HOM05D003909 ORTHO05D004478 2.3e-92 343.6 469 48.6
FvH4_6g31000 Fragaria vesca HOM05D003909 ORTHO05D004478 2.3e-92 343.6 466 48.7
PGR102G2609 Punica granatum HOM05D003909 ORTHO05D004478 3.0e-92 343.2 474 50.6
Gohir.D03G074300 Gossypium hirsutum HOM05D003909 ORTHO05D004478 4.0e-92 342.8 467 55.5
TWI75G1291 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 5.2e-92 342.4 455 49.2
TWI18G1146 Tripterygium wilfordii HOM05D003909 ORTHO05D004478 6.8e-92 342.0 468 53.0
Gorai.002G058700 Gossypium raimondii HOM05D003909 ORTHO05D004478 2.0e-91 340.5 467 54.2
FAN02G1452 Fragaria x ananassa HOM05D003909 ORTHO05D004478 3.4e-91 339.7 448 54.5
Cpa.g.c31444.1 Carica papaya HOM05D003909 ORTHO05D004478 4.4e-91 339.3 496 47.2
Hma1.2p1_0323F.1_g125230 Hydrangea macrophylla HOM05D003909 ORTHO05D004478 4.4e-91 339.3 452 54.4
Thhalv10020773m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 1.3e-90 337.8 460 47.8
FAN05G4496 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.3e-90 337.8 452 53.3
Gohir.A02G122200 Gossypium hirsutum HOM05D003909 ORTHO05D004478 1.4e-89 334.3 465 53.5
Potri.003G056400 Populus trichocarpa HOM05D003909 ORTHO05D004478 1.8e-89 334.0 548 45.4
Migut.I00858 Erythranthe guttata HOM05D003909 ORTHO05D004478 3.1e-89 333.2 457 53.0
Sabra03G0031800 Salix brachista HOM05D003909 ORTHO05D004478 3.1e-89 333.2 521 47.0
Glyma.15G013600 Glycine max HOM05D003909 ORTHO05D004478 9.1e-89 331.6 466 54.1
ClCG09G002210 Citrullus lanatus HOM05D003909 ORTHO05D004478 1.2e-88 331.3 503 50.5
Sp3g14320 Schrenkiella parvula HOM05D003909 ORTHO05D004478 4.5e-88 329.3 441 49.4
SGA_v2.0_scaffold5G02599 Striga asiatica HOM05D003909 ORTHO05D004478 4.5e-88 329.3 466 52.6
Oeu033481.1 Olea europaea HOM05D003909 ORTHO05D004478 5.9e-88 328.9 461 54.0
ATR1120G115 Amborella trichopoda HOM05D003909 ORTHO05D004478 7.7e-88 328.6 471 50.7
Phvul.005G172100 Phaseolus vulgaris HOM05D003909 ORTHO05D004478 3.8e-87 326.2 473 52.6
PSO782G4639 Papaver somniferum HOM05D003909 ORTHO05D004478 6.5e-87 325.5 458 53.1
VMungo1080G0623 Vigna mungo HOM05D003909 ORTHO05D004478 1.5e-86 324.3 475 50.1
PSO063G3399 Papaver somniferum HOM05D003909 ORTHO05D004478 1.9e-86 323.9 456 52.2
Rhsim08G0220400 Rhododendron simsii HOM05D003909 ORTHO05D004478 3.2e-86 323.2 416 51.4
Sed0003438 Sechium edule HOM05D003909 ORTHO05D004478 9.4e-86 321.6 496 46.0
CARHR091100 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.2e-85 321.2 466 44.4
ECA247G1970 Erigeron canadensis HOM05D003909 ORTHO05D004478 1.2e-85 321.2 452 47.6
GSVIVG01017123001 Vitis vinifera HOM05D003909 ORTHO05D004478 1.6e-85 320.9 450 48.2
AT1G52380 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 2.7e-85 320.1 484 44.4
Carub.0001s4138 Capsella rubella HOM05D003909 ORTHO05D004478 3.6e-85 319.7 468 46.6
Glyma.13G360300 Glycine max HOM05D003909 ORTHO05D004478 3.6e-85 319.7 470 51.5
HanXRQChr10g0314961 Helianthus annuus HOM05D003909 ORTHO05D004478 8.0e-85 318.5 474 47.7
Lj3g0018129 Lotus japonicus HOM05D003909 ORTHO05D004478 1.0e-84 318.2 455 49.2
DCAR_026310 Daucus carota HOM05D003909 ORTHO05D004478 6.8e-84 315.5 477 50.5
AL1G60630 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 8.8e-84 315.1 468 48.5
AT3G15970 Arabidopsis thaliana HOM05D003909 ORTHO05D004478 1.2e-83 314.7 480 45.8
Lsat_1_v5_gn_1_34841 Lactuca sativa HOM05D003909 ORTHO05D004478 2.6e-83 313.5 461 48.6
Carub.0003s1570 Capsella rubella HOM05D003909 ORTHO05D004478 9.8e-83 311.6 476 45.4
arahy.Tifrunner.gnm1.ann1.63P8XR Arachis hypogaea HOM05D003909 ORTHO05D004478 1.3e-82 311.2 461 48.6
CARHR042530 Cardamine hirsuta HOM05D003909 ORTHO05D004478 1.3e-82 311.2 459 46.4
AL3G28620 Arabidopsis lyrata HOM05D003909 ORTHO05D004478 2.2e-82 310.5 489 45.2
TPR.G24152 Trifolium pratense HOM05D003909 ORTHO05D004478 3.7e-82 309.7 451 53.0
Medtr4g011930 Medicago truncatula HOM05D003909 ORTHO05D004478 6.3e-82 308.9 462 49.4
Ah.01g006030 Amaranthus hybridus HOM05D003909 ORTHO05D004478 1.1e-81 308.1 476 46.8
BcaB02g10997 Brassica carinata HOM05D003909 ORTHO05D004478 1.4e-81 307.8 463 45.8
CANSAT56G2173 Cannabis sativa HOM05D003909 ORTHO05D004478 3.1e-81 306.6 452 46.2
Ah.01g021220 Amaranthus hybridus HOM05D003909 ORTHO05D004478 9.1e-81 305.1 463 49.9
MBI04_g18158_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.6e-80 304.3 459 46.8
A05p19040 Brassica napus HOM05D003909 ORTHO05D004478 3.5e-80 303.1 467 45.2
BcaC08g43991 Brassica carinata HOM05D003909 ORTHO05D004478 7.7e-80 302.0 474 45.4
C06p13960 Brassica napus HOM05D003909 ORTHO05D004478 7.7e-80 302.0 474 45.4
BolC6t36574H Brassica oleracea HOM05D001315 ORTHO05D001618 7.7e-80 302.0 474 45.4
BraA05t20804Z Brassica rapa HOM05D003909 ORTHO05D004478 7.7e-80 302.0 467 45.0
Sc15g0001250 Simmondsia chinensis HOM05D003909 ORTHO05D004478 1.0e-79 301.6 466 48.5
AUR62016436 Chenopodium quinoa HOM05D003909 ORTHO05D004478 1.3e-79 301.2 455 45.9
Lalb_Chr22g0351201 Lupinus albus HOM05D003909 ORTHO05D004478 1.3e-79 301.2 464 51.5
Sed0010123 Sechium edule HOM05D003909 ORTHO05D004478 2.9e-79 300.1 497 46.5
SEGI_39159 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 1.1e-78 298.1 494 45.7
EL10Ac9g21982 Beta vulgaris HOM05D003909 ORTHO05D004478 1.9e-78 297.4 469 47.8
AUR62011621 Chenopodium quinoa HOM05D003909 ORTHO05D004478 2.5e-78 297.0 453 45.5
unitig_21.g20517 Utricularia gibba HOM05D003909 ORTHO05D004478 7.2e-78 295.4 462 44.6
Ca_20399_v3 Cicer arietinum L. HOM05D003909 ORTHO05D004478 4.7e-77 292.7 454 49.1
Sp1g38990 Schrenkiella parvula HOM05D003909 ORTHO05D004478 6.1e-77 292.4 457 45.5
SalBow2G1612 Salvia bowleyana HOM05D003909 ORTHO05D004478 8.0e-77 292.0 399 49.9
Psat7g253000 Pisum sativum HOM05D003909 ORTHO05D004478 2.3e-76 290.4 450 47.3
Lalb_Chr24g0395791 Lupinus albus HOM05D003909 ORTHO05D004478 3.0e-76 290.0 471 47.8
Thhalv10011504m.g Eutrema salsugineum HOM05D003909 ORTHO05D004478 6.8e-76 288.9 457 46.4
A06p01850 Brassica napus HOM05D003909 ORTHO05D004478 8.9e-76 288.5 459 44.0
BolC6t35869H Brassica oleracea HOM05D003909 ORTHO05D004478 1.2e-75 288.1 454 44.1
THA.LOC104818004 Tarenaya hassleriana HOM05D003909 ORTHO05D004478 2.0e-75 287.3 474 47.0
HanXRQChr02g0032691 Helianthus annuus HOM05D003909 ORTHO05D004478 3.4e-75 286.6 460 51.1
BraA06t23402Z Brassica rapa HOM05D003909 ORTHO05D004478 4.4e-75 286.2 458 43.9
C06p07830 Brassica napus HOM05D003909 ORTHO05D004478 2.8e-74 283.5 455 44.0
Aa31LG10G2540 Aethionema arabicum HOM05D003909 ORTHO05D004478 1.8e-73 280.8 464 44.4
Lalb_Chr14g0373481 Lupinus albus HOM05D003909 ORTHO05D004478 3.9e-71 273.1 465 46.7
Nn8g39239 Nelumbo nucifera HOM05D003909 ORTHO05D004478 1.0e-68 265.0 402 51.5
Os05g0349500 Oryza sativa ssp. japonica HOM05D003909 ORTHO05D004478 1.8e-68 264.2 491 45.0
HanXRQChr04g0096531 Helianthus annuus HOM05D003909 ORTHO05D004478 2.2e-66 257.3 484 43.8
RcHm_v2.0_Chr2g0137631 Rosa chinensis HOM05D003909 ORTHO05D004478 1.2e-64 251.5 468 40.8
MBI01_g16632_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.7e-64 250.4 437 45.3
HPP92_019977 Vanilla planifolia HOM05D003909 ORTHO05D004478 4.6e-64 249.6 468 41.7
Nn2g11803 Nelumbo nucifera HOM05D003909 ORTHO05D004478 7.8e-64 248.8 393 51.1
BcaC01g03847 Brassica carinata HOM05D003909 ORTHO05D004478 1.2e-59 235.0 459 41.0
C03p47980 Brassica napus HOM05D003909 ORTHO05D004478 1.2e-59 235.0 459 41.0
BolC3t17078H Brassica oleracea HOM05D003909 ORTHO05D004478 3.4e-59 233.4 459 40.7
SEGI_02359 Sequoiadendron giganteum HOM05D003909 ORTHO05D004478 4.4e-59 233.0 473 41.2
Mapoly0073s0079 Marchantia polymorpha HOM05D003909 ORTHO05D004478 1.0e-55 221.9 480 40.2
Zm00001eb360880 Zea mays HOM05D003909 ORTHO05D004478 5.1e-55 219.5 465 44.3
BcaC08g43418 Brassica carinata HOM05D003909 ORTHO05D004478 1.1e-54 218.4 461 42.5
SHI24405 Sapria himalayana HOM05D003909 ORTHO05D004478 3.2e-49 200.3 459 36.4
Zm00001eb155830 Zea mays HOM05D003909 ORTHO05D004478 7.1e-49 199.1 461 38.8
MBI04_g40091_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 1.6e-48 198.0 365 43.3
BcaC08g43420 Brassica carinata HOM05D003909 ORTHO05D004478 3.0e-47 193.7 152 66.4
unitig_744.g24336 Utricularia gibba HOM05D003909 ORTHO05D004478 4.3e-38 163.3 364 39.6
AagrBONN_evm.TU.Sc2ySwM_228.3069 Anthoceros agrestis HOM05D003909 ORTHO05D004478 7.3e-38 162.5 481 39.3
Pp3c3_6080 Physcomitrium patens HOM05D003909 ORTHO05D004478 1.3e-37 161.8 472 37.9
CDE06G1609 Ceratophyllum demersum HOM05D003909 ORTHO05D004478 2.8e-37 160.6 372 38.4
SMO351G0411 Selaginella moellendorffii HOM05D003848 ORTHO05D004616 1.2e-35 155.2 452 33.6
MBI04_g43353_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.0e-35 154.5 175 53.1
Actinidia14363 Actinidia chinensis HOM05D003909 ORTHO05D004478 4.5e-27 126.7 86 72.1
A06p01830 Brassica napus HOM05D003909 ORTHO05D004478 4.2e-25 120.2 101 65.3
BcaC01g01324 Brassica carinata HOM05D003909 ORTHO05D004478 2.5e-22 110.9 138 48.6
BraA06t23400Z Brassica rapa HOM05D003909 ORTHO05D004478 2.2e-18 97.8 87 64.4
C03p90640 Brassica napus HOM05D003909 ORTHO05D004478 2.9e-18 97.4 131 45.0
BolC3t21386H Brassica oleracea HOM05D001315 ORTHO05D001618 2.9e-18 97.4 131 45.0
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 8.4e-18 95.9 95 62.1
CBR_g38869 Chara braunii HOM05D003909 ORTHO05D004478 9.3e-17 92.4 481 32.2
arahy.Tifrunner.gnm1.ann1.HH7TIC Arachis hypogaea HOM05D003909 ORTHO05D004478 3.9e-15 87.0 86 60.5
Medtr1g112060 Medicago truncatula HOM05D003909 ORTHO05D004478 2.5e-14 84.3 114 48.2
unitig_744.g24337 Utricularia gibba HOM05D003909 ORTHO05D004478 1.8e-12 78.2 66 59.1
HPP92_020042 Vanilla planifolia HOM05D003909 ORTHO05D004478 1.8e-12 78.2 135 45.2
C06p07870 Brassica napus HOM05D003909 ORTHO05D004478 6.9e-12 76.3 130 36.2
BolC6t35871H Brassica oleracea HOM05D003909 ORTHO05D004478 6.9e-12 76.3 130 36.2
Cre15.g641000 Chlamydomonas reinhardtii HOM05D003909 ORTHO05D004478 1.2e-11 75.5 88 46.6
A03p39600 Brassica napus HOM05D003909 ORTHO05D004478 3.4e-11 73.9 449 26.5
PRCOL_00002651 Prasinoderma coloniale HOM05D003909 ORTHO05D004478 4.5e-11 73.6 198 30.3
MCO12G345 Micromonas commoda HOM05D003909 ORTHO05D004478 2.2e-10 71.2 288 30.2
FAN09G3670 Fragaria x ananassa HOM05D003909 ORTHO05D004478 1.3e-07 62.0 65 56.9
MBI04_g43354_MAGBIO Magnolia biondii HOM05D003909 ORTHO05D004478 2.5e-06 57.8 43 72.1
Cfa024721 Carpinus fangiana HOM05D003909 ORTHO05D121609 4.3e-06 57.0 132 33.3
CAN.G583.9 Capsicum annuum HOM05D002258 ORTHO05D002539 9.7e-06 55.8 124 33.9
unitig_0.g2557 Utricularia gibba HOM05D002258 ORTHO05D002539 9.7e-06 55.8 124 33.1


User provided reference genes

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