Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g114410.3 Solanum lycopersicum HOM05D000251 ORTHO05D007889 0.0e+00 1797.3 985 100.0
Sopen03g033510 Solanum pennellii HOM05D000251 ORTHO05D007889 0.0e+00 1728.8 985 95.9
CAN.G781.3 Capsicum annuum HOM05D000251 ORTHO05D007889 0.0e+00 1509.6 949 85.4
Nitab4.5_0000646g0050 Nicotiana tabacum HOM05D000251 ORTHO05D007889 0.0e+00 1435.2 941 79.6
Nitab4.5_0004342g0020 Nicotiana tabacum HOM05D000251 ORTHO05D007889 0.0e+00 1419.1 950 80.3
Peaxi162Scf00017g03036 Petunia axillaris HOM05D000251 ORTHO05D007889 0.0e+00 1404.8 940 79.0
Dinv36870 Davidia involucrata HOM05D000251 ORTHO05D007889 1.3e-311 1072.8 826 68.6
Cc04_g07720 Coffea canephora HOM05D000251 ORTHO05D007889 8.7e-302 1040.4 838 65.4
QL10p022316 Quercus lobata HOM05D000251 ORTHO05D007889 4.8e-300 1034.6 909 61.2
Lj9C433G11 Lonicera japonica HOM05D000251 ORTHO05D007889 1.8e-299 1032.7 870 62.8
CSS0040641 Camellia sinensis var. sinensis HOM05D000251 ORTHO05D007889 1.7e-297 1026.2 866 63.3
GSVIVG01008206001 Vitis vinifera HOM05D000251 ORTHO05D007889 3.0e-294 1015.4 831 65.0
CiPaw.15G123200 Carya illinoinensis HOM05D000251 ORTHO05D007889 5.7e-293 1011.1 911 60.6
Prupe.5G214300 Prunus persica HOM05D000251 ORTHO05D007889 2.4e-291 1005.7 903 60.6
TAR622G0769 Trochodendron aralioides HOM05D000251 ORTHO05D007889 9.0e-291 1003.8 810 64.4
Nn4g23656 Nelumbo nucifera HOM05D000251 ORTHO05D007889 3.4e-290 1001.9 911 60.6
Rhsim08G0149100 Rhododendron simsii HOM05D000251 ORTHO05D007889 4.5e-290 1001.5 935 59.7
Cfa019845 Carpinus fangiana HOM05D000251 ORTHO05D007889 7.7e-290 1000.7 971 58.1
Atru.chr9.705 Acer truncatum HOM05D000251 ORTHO05D007889 2.9e-289 998.8 885 59.8
Duzib205G0552 Durio zibethinus HOM05D000251 ORTHO05D007889 8.5e-289 997.3 814 64.5
COL.COLO4_32187 Corchorus olitorius HOM05D000251 ORTHO05D007889 1.9e-288 996.1 898 60.0
Ciclev10018692m.g Citrus clementina HOM05D000251 ORTHO05D007889 3.6e-287 991.9 901 59.3
Thecc.03G114900 Theobroma cacao HOM05D000251 ORTHO05D007889 1.0e-286 990.3 908 59.6
Actinidia31039 Actinidia chinensis HOM05D000251 ORTHO05D007889 1.1e-285 986.9 849 62.7
SGA_v2.0_scaffold283G46981 Striga asiatica HOM05D000251 ORTHO05D007889 5.7e-285 984.6 842 62.0
Potri.012G058100 Populus trichocarpa HOM05D000251 ORTHO05D007889 1.1e-283 980.3 891 60.4
arahy.Tifrunner.gnm1.ann1.ESZ5GR Arachis hypogaea HOM05D000251 ORTHO05D007889 1.5e-282 976.5 906 59.8
VMungo1215G2774 Vigna mungo HOM05D000251 ORTHO05D007889 5.9e-282 974.5 879 60.0
Gohir.A03G074400 Gossypium hirsutum HOM05D000251 ORTHO05D007889 2.9e-281 972.2 818 62.1
PGR044G2008 Punica granatum HOM05D000251 ORTHO05D007889 8.5e-281 970.7 853 61.4
TWI81G0067 Tripterygium wilfordii HOM05D000251 ORTHO05D007889 1.1e-280 970.3 809 63.7
Gorai.003G106300 Gossypium raimondii HOM05D000251 ORTHO05D007889 3.2e-280 968.8 818 61.7
Gohir.D03G100900 Gossypium hirsutum HOM05D000251 ORTHO05D007889 5.5e-280 968.0 818 61.7
Sabra12G0041800 Salix brachista HOM05D000251 ORTHO05D007889 9.4e-280 967.2 944 57.7
MD14G1219700 Malus domestica HOM05D000251 ORTHO05D007889 1.6e-279 966.5 906 58.7
arahy.Tifrunner.gnm1.ann1.MAJ7P0 Arachis hypogaea HOM05D000251 ORTHO05D007889 2.1e-279 966.1 912 58.9
Lalb_Chr12g0197521 Lupinus albus HOM05D000251 ORTHO05D007889 2.1e-279 966.1 844 62.2
HanXRQChr05g0157761 Helianthus annuus HOM05D000251 ORTHO05D007889 3.6e-279 965.3 877 60.4
RcHm_v2.0_Chr7g0184311 Rosa chinensis HOM05D000251 ORTHO05D007889 1.4e-278 963.4 902 59.0
CsaV3_1G003490 Cucumis sativus L. HOM05D000251 ORTHO05D007889 4.4e-277 958.4 900 59.1
MD06G1209200 Malus domestica HOM05D000251 ORTHO05D007889 4.4e-277 958.4 908 58.5
Ca_02522_v3 Cicer arietinum L. HOM05D000251 ORTHO05D007889 5.7e-277 958.0 886 59.7
Migut.G01282 Erythranthe guttata HOM05D000251 ORTHO05D007889 5.7e-277 958.0 838 61.2
Lsat_1_v5_gn_5_24161 Lactuca sativa HOM05D000251 ORTHO05D007889 2.2e-276 956.1 841 62.3
Psat4g045640 Pisum sativum HOM05D000251 ORTHO05D007889 4.1e-275 951.8 815 62.3
Lj4g0022759 Lotus japonicus HOM05D000251 ORTHO05D007889 4.5e-274 948.3 876 58.9
CANSAT80G2803 Cannabis sativa HOM05D000251 ORTHO05D007889 1.7e-273 946.4 801 61.8
FAN18G2230 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.2e-273 946.0 864 59.3
Eucgr.K02644 Eucalyptus grandis HOM05D000251 ORTHO05D007889 2.9e-273 945.7 812 63.1
FvH4_5g12911 Fragaria vesca HOM05D000251 ORTHO05D007889 6.5e-273 944.5 906 57.5
DCAR_015126 Daucus carota HOM05D000251 ORTHO05D007889 3.2e-272 942.2 956 55.8
ECA246G2449 Erigeron canadensis HOM05D000251 ORTHO05D007889 5.5e-272 941.4 798 64.0
Sed0011411 Sechium edule HOM05D000251 ORTHO05D007889 9.4e-272 940.6 913 57.0
Glyma.17G123700 Glycine max HOM05D000251 ORTHO05D007889 2.1e-271 939.5 900 57.1
Glyma.05G015200 Glycine max HOM05D000251 ORTHO05D007889 2.6e-269 932.6 921 56.2
Medtr4g112420 Medicago truncatula HOM05D000251 ORTHO05D007889 2.8e-268 929.1 886 58.2
FAN13G2548 Fragaria x ananassa HOM05D000251 ORTHO05D000414 3.5e-266 922.2 889 57.9
Haze_18572 Corylus avellana HOM05D000251 ORTHO05D007889 1.0e-265 920.6 818 61.0
Carub.0006s2087 Capsella rubella HOM05D000251 ORTHO05D007889 9.4e-264 914.1 799 61.2
Aqoxy3G00409 Aquilegia oxysepala HOM05D000251 ORTHO05D007889 1.2e-263 913.7 907 56.3
EL10Ac5g11229 Beta vulgaris HOM05D000251 ORTHO05D007889 1.6e-263 913.3 858 58.4
AL6G34270 Arabidopsis lyrata HOM05D000251 ORTHO05D007889 1.0e-262 910.6 799 61.8
AT5G23080 Arabidopsis thaliana HOM05D000251 ORTHO05D007889 3.0e-262 909.1 797 61.5
Sp2g24040 Schrenkiella parvula HOM05D000251 ORTHO05D007889 3.0e-262 909.1 813 60.1
Manes.05G117300 Manihot esculenta HOM05D000251 ORTHO05D007889 1.3e-260 903.7 743 64.5
THA.LOC104819385 Tarenaya hassleriana HOM05D000251 ORTHO05D007889 2.8e-260 902.5 818 60.9
ClCG06G015150 Citrullus lanatus HOM05D000251 ORTHO05D007889 5.3e-259 898.3 926 54.3
FAN18G3790 Fragaria x ananassa HOM05D000251 ORTHO05D007889 2.7e-258 896.0 943 53.9
MELO3C017274.2 Cucumis melo HOM05D000251 ORTHO05D007889 7.7e-258 894.4 831 59.0
TPR.G2793 Trifolium pratense HOM05D000251 ORTHO05D007889 8.5e-257 891.0 903 54.8
Aa31LG11G2570 Aethionema arabicum HOM05D000251 ORTHO05D007889 1.1e-256 890.6 809 60.0
BraA03t13769Z Brassica rapa HOM05D000251 ORTHO05D007889 4.7e-255 885.2 816 58.8
A03p46430 Brassica napus HOM05D000251 ORTHO05D007889 1.0e-254 884.0 815 59.0
Hund02531 Selenicereus undatus HOM05D000251 ORTHO05D007889 3.0e-254 882.5 855 57.2
AUR62036928 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.2e-253 880.6 855 57.0
vmacro17646 Vaccinium macrocarpon HOM05D000251 ORTHO05D007889 2.0e-253 879.8 1023 50.8
Thhalv10003608m.g Eutrema salsugineum HOM05D000251 ORTHO05D007889 5.7e-253 878.2 814 58.7
C07p44450 Brassica napus HOM05D000251 ORTHO05D007889 1.4e-251 873.6 880 55.6
BolC7t44966H Brassica oleracea HOM05D000251 ORTHO05D007889 5.4e-251 871.7 880 55.5
BraA09t36355Z Brassica rapa HOM05D000251 ORTHO05D007889 1.3e-249 867.1 943 53.0
BcaC04g23479 Brassica carinata HOM05D000251 ORTHO05D007889 1.7e-249 866.7 814 58.0
BolC9t53705H Brassica oleracea HOM05D000251 ORTHO05D007889 1.7e-249 866.7 814 58.0
Sc10g0009620 Simmondsia chinensis HOM05D000251 ORTHO05D007889 3.8e-249 865.5 740 61.5
PSO017G5760 Papaver somniferum HOM05D000251 ORTHO05D007889 1.1e-248 864.0 835 56.6
Cpa.g.sc13.78 Carica papaya HOM05D000251 ORTHO05D007889 2.5e-248 862.8 741 62.3
A09p07070 Brassica napus HOM05D000251 ORTHO05D007889 3.3e-248 862.4 833 57.0
C09p07920 Brassica napus HOM05D000251 ORTHO05D007889 9.5e-248 860.9 814 57.6
Rhsim08G0139200 Rhododendron simsii HOM05D000251 ORTHO05D007889 3.0e-246 855.9 695 65.3
PSO478G4362 Papaver somniferum HOM05D000251 ORTHO05D007889 2.6e-245 852.8 807 57.5
SalBow2G1753 Salvia bowleyana HOM05D000251 ORTHO05D007889 3.7e-244 849.0 835 55.6
BcaB04g19889 Brassica carinata HOM05D000251 ORTHO05D007889 2.6e-237 826.2 814 56.6
AUR62032169 Chenopodium quinoa HOM05D000251 ORTHO05D007889 1.4e-235 820.5 840 54.6
unitig_736.g22471 Utricularia gibba HOM05D000251 ORTHO05D007889 4.6e-234 815.5 888 53.9
Phvul.003G179400 Phaseolus vulgaris HOM05D000251 ORTHO05D007889 4.4e-229 798.9 778 56.2
CDE08G0099 Ceratophyllum demersum HOM05D000251 ORTHO05D007889 4.1e-227 792.3 798 53.6
ATR0723G093 Amborella trichopoda HOM05D000251 ORTHO05D007889 5.4e-227 792.0 838 54.5
Os06g0489200 Oryza sativa ssp. japonica HOM05D000251 ORTHO05D007889 9.9e-221 771.2 896 50.0
Ah.02g114420 Amaranthus hybridus HOM05D000251 ORTHO05D007889 1.2e-197 694.5 825 49.6
AagrBONN_evm.TU.Sc2ySwM_344.5190 Anthoceros agrestis HOM05D000251 ORTHO05D007889 1.3e-172 611.3 870 45.4
Nn039s41709 Nelumbo nucifera HOM05D000251 ORTHO05D007889 1.8e-166 590.9 505 61.4
Pp3c6_280 Physcomitrium patens HOM05D000251 ORTHO05D007889 6.1e-162 575.9 836 44.1
SMO358G0348 Selaginella moellendorffii HOM05D000251 ORTHO05D007889 6.3e-151 539.3 848 41.2
Mapoly0043s0012 Marchantia polymorpha HOM05D000251 ORTHO05D007889 1.0e-148 531.9 848 43.0
CARHR190450 Cardamine hirsuta HOM05D000251 ORTHO05D007889 7.2e-139 499.2 509 55.2
HPP92_003115 Vanilla planifolia HOM05D000251 ORTHO05D007889 2.9e-132 477.2 667 45.0
SEGI_18733 Sequoiadendron giganteum HOM05D000251 ORTHO05D007889 9.2e-126 455.7 448 54.7
Hma1.2p1_0595F.1_g186110 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 1.9e-123 448.0 353 64.9
CBR_g57132 Chara braunii HOM05D000251 ORTHO05D007889 3.0e-92 344.4 1098 30.3
Hma1.2p1_0595F.1_g186100 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.4e-89 334.7 226 74.8
Zm00001eb382170 Zea mays HOM05D000251 ORTHO05D007889 3.8e-87 327.4 414 46.9
MCO14G468 Micromonas commoda HOM05D000251 ORTHO05D007889 9.3e-62 243.0 737 30.9
Actinidia16061 Actinidia chinensis HOM05D000251 ORTHO05D007889 3.9e-52 211.1 200 55.5
Cre13.g568700 Chlamydomonas reinhardtii HOM05D000251 ORTHO05D007889 1.4e-49 202.6 330 40.3
Ah.02g114430 Amaranthus hybridus HOM05D000169 ORTHO05D000542 7.9e-45 186.8 106 84.9
SHI18972 Sapria himalayana HOM05D000251 ORTHO05D007889 1.0e-44 186.4 107 81.3
BcaC06g33188 Brassica carinata HOM05D000251 ORTHO05D007889 4.8e-42 177.6 280 45.4
Psat4g067080 Pisum sativum HOM05D000251 ORTHO05D007889 3.8e-39 167.9 231 43.3
CiPaw.15G123400 Carya illinoinensis HOM05D000251 ORTHO05D007889 2.6e-27 128.6 93 69.9
Cfa026338 Carpinus fangiana HOM05D000251 ORTHO05D007889 2.7e-24 118.6 817 25.5
GSVIVG01008210001 Vitis vinifera HOM05D000251 ORTHO05D007889 1.7e-23 115.9 73 79.5
Actinidia16060 Actinidia chinensis HOM05D000251 ORTHO05D007889 3.8e-23 114.8 167 43.1
Rhsim08G0139300 Rhododendron simsii HOM05D000251 ORTHO05D007889 7.0e-17 94.0 168 39.9
Hma1.2p1_0690F.1_g203840 Hydrangea macrophylla HOM05D000251 ORTHO05D007889 2.1e-13 82.4 46 84.8
Atru.chr7.2702 Acer truncatum HOM05D005511 ORTHO05D006616 4.6e-08 64.7 88 37.5
CsaV3_5G010440 Cucumis sativus L. HOM05D005511 ORTHO05D006616 4.6e-08 64.7 89 40.4
MELO3C003615.2 Cucumis melo HOM05D005511 ORTHO05D006616 1.3e-07 63.2 89 40.4
CANSAT25G2351 Cannabis sativa HOM05D005511 ORTHO05D006616 3.0e-07 62.0 72 47.2
MELO3C018377.2 Cucumis melo HOM05D005511 ORTHO05D006616 3.9e-07 61.6 89 39.3
COL.COLO4_18647 Corchorus olitorius HOM05D005511 ORTHO05D006616 8.6e-07 60.5 95 35.8
MD15G1105800 Malus domestica HOM05D005511 ORTHO05D006616 8.6e-07 60.5 89 39.3
Dinv37487 Davidia involucrata HOM05D005511 ORTHO05D006616 1.1e-06 60.1 86 39.5
Gorai.010G125400 Gossypium raimondii HOM05D005511 ORTHO05D006616 1.1e-06 60.1 102 33.3
QL12p025629 Quercus lobata HOM05D005511 ORTHO05D006616 1.1e-06 60.1 66 45.5
Potri.006G279800 Populus trichocarpa HOM05D005511 ORTHO05D006616 1.5e-06 59.7 62 46.8
Gohir.A06G108200 Gossypium hirsutum HOM05D005511 ORTHO05D006616 1.9e-06 59.3 102 33.3
Sabra06G0216800 Salix brachista HOM05D005511 ORTHO05D006616 1.9e-06 59.3 62 46.8
CBR_g29483 Chara braunii HOM05D000785 ORTHO05D006616 3.3e-06 58.5 80 40.0
Pp3c17_14220 Physcomitrium patens HOM05D005511 ORTHO05D006616 3.3e-06 58.5 63 41.3
Sabra18G0005200 Salix brachista HOM05D005511 ORTHO05D006616 3.3e-06 58.5 62 45.2
HPP92_005904 Vanilla planifolia HOM05D005511 ORTHO05D006616 3.3e-06 58.5 81 40.7
Lsat_1_v5_gn_4_21520 Lactuca sativa HOM05D003221 ORTHO05D016847 7.3e-06 57.4 134 33.6
MSTRG.966 Avicennia marina HOM05D005511 ORTHO05D006616 9.5e-06 57.0 61 42.6


User provided reference genes

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