Gene: Sopen03g033510
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen03g033510
- Transcript Identifier Sopen03g033510.1
- Gene Type Coding gene
- Location Spenn-ch03 : 68747242-68761213 : positive
Gene Family Information
- ID HOM05D000251
- #Genes/#Species 1696/100
- Phylogenetic origin
- ID ORTHO05D007889
- #Genes/#Species 125/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Sopen03g033510.1
Descriptions
- Description Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. Role in RNA binding or processing. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1. | TOUGH (TGH) | FUNCTIONS IN: protein binding, RNA binding | INVOLVED IN: multicellular organismal development, phloem or xylem histogenesis, RNA processing | LOCATED IN: nucleus | EXPRESSED IN: 29 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1604 , SWAP/Surp
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT5G23080 |
GO:0015914 | ISO | PLAZA Homology (enrichment) | phospholipid transport | HOM05D000251 |
GO:0009926 | ISO | PLAZA Integrative Orthology | auxin polar transport | AT5G23080 |
GO:0009734 | ISO | PLAZA Integrative Orthology | auxin-activated signaling pathway | AT5G23080 |
GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT5G23080 |
GO:0010087 | ISO | PLAZA Integrative Orthology | phloem or xylem histogenesis | AT5G23080 |
GO:0006397 | IEA | InterPro | mRNA processing | |
GO:0006396 | IEA | InterPro | RNA processing |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0070878 | ISO | PLAZA Integrative Orthology | primary miRNA binding | AT5G23080 |
GO:0070883 | ISO | PLAZA Integrative Orthology | pre-miRNA binding | AT5G23080 |
GO:0140326 | ISO | PLAZA Homology (enrichment) | ATPase-coupled intramembrane lipid transporter activity | HOM05D000251 |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G23080 |
GO:0005524 | ISO | PLAZA Homology (enrichment) | ATP binding | HOM05D000251 |
GO:0003723 | IEA | InterPro | RNA binding | |
GO:0000166 | ISO | PLAZA Homology (enrichment) | nucleotide binding | HOM05D000251 |
GO:0000287 | ISO | PLAZA Homology (enrichment) | magnesium ion binding | HOM05D000251 |
GO:0005215 | ISO | PLAZA Homology (enrichment) | transporter activity | HOM05D000251 |
GO:0016887 | ISO | PLAZA Homology (enrichment) | ATP hydrolysis activity | HOM05D000251 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G23080 |
GO:0016021 | ISO | PLAZA Homology (enrichment) | integral component of membrane | HOM05D000251 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
16.9.2.1.4 | RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component TOUGH |