Gene: Sopen03g033510

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen03g033510
  • Transcript Identifier Sopen03g033510.1
  • Gene Type Coding gene
  • Location Spenn-ch03 : 68747242-68761213 : positive

Gene Family Information

  • ID HOM05D000251
  • #Genes/#Species 1696/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen03g033510.1

Descriptions

  • Description Interacts with TATA-box binding protein 2. Contains domains with strong similarity to G-patch and SWAP domains, characteristic of RNA binding and processing proteins. Colocalizes with the splicing regulator SRp34 to subnuclear particles. Role in RNA binding or processing. Mutants display developmental defects, including reduced plant height, polycotyly, and reduced vascularization. Strong genetic interaction between TGH and AMP1. | TOUGH (TGH) | FUNCTIONS IN: protein binding, RNA binding | INVOLVED IN: multicellular organismal development, phloem or xylem histogenesis, RNA processing | LOCATED IN: nucleus | EXPRESSED IN: 29 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1604 , SWAP/Surp
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT5G23080
GO:0015914
ISO
PLAZA Homology (enrichment)phospholipid transport HOM05D000251
GO:0009926
ISO
PLAZA Integrative Orthologyauxin polar transport AT5G23080
GO:0009734
ISO
PLAZA Integrative Orthologyauxin-activated signaling pathway AT5G23080
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT5G23080
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT5G23080
GO:0006397
IEA
InterPromRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0070878
ISO
PLAZA Integrative Orthologyprimary miRNA binding AT5G23080
GO:0070883
ISO
PLAZA Integrative Orthologypre-miRNA binding AT5G23080
GO:0140326
ISO
PLAZA Homology (enrichment)ATPase-coupled intramembrane lipid transporter activity HOM05D000251
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G23080
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D000251
GO:0003723
IEA
InterProRNA binding
GO:0000166
ISO
PLAZA Homology (enrichment)nucleotide binding HOM05D000251
GO:0000287
ISO
PLAZA Homology (enrichment)magnesium ion binding HOM05D000251
GO:0005215
ISO
PLAZA Homology (enrichment)transporter activity HOM05D000251
GO:0016887
ISO
PLAZA Homology (enrichment)ATP hydrolysis activity HOM05D000251

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G23080
GO:0016021
ISO
PLAZA Homology (enrichment)integral component of membrane HOM05D000251

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035967 SWAP/Surp superfamily
IPR000061 SWAP/Surp
IPR011666 G patch domain-containing protein, N-terminal
Mapman id Description
16.9.2.1.4 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component TOUGH