Gene: Solyc03g114410.3

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc03g114410.3
  • Transcript Identifier Solyc03g114410.3.1
  • Gene Type Coding gene
  • Location SL4.0ch03 : 58828811-58843028 : positive

Gene Family Information

  • ID HOM05D000251
  • #Genes/#Species 1696/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc03g114410.3.1
  • uniprot A0A3Q7GG50
  • gene_id Solyc03g114410

Descriptions

  • Description G patch domain-containing protein TGH (AHRD V3.3 *** A0A1J3DWV0_NOCCA)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030422
ISO
PLAZA Integrative Orthologyproduction of siRNA involved in RNA interference AT5G23080
GO:0015914
ISO
PLAZA Homology (enrichment)phospholipid transport HOM05D000251
GO:0009926
ISO
PLAZA Integrative Orthologyauxin polar transport AT5G23080
GO:0009734
ISO
PLAZA Integrative Orthologyauxin-activated signaling pathway AT5G23080
GO:0035196
ISO
PLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNA AT5G23080
GO:0010087
ISO
PLAZA Integrative Orthologyphloem or xylem histogenesis AT5G23080
GO:0006397
IEA
GOA DatabasemRNA processing
GO:0006397
IEA
InterPromRNA processing
GO:0006396
IEA
GOA DatabaseRNA processing
GO:0006396
IEA
InterProRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005215
ISO
PLAZA Homology (enrichment)transporter activity HOM05D000251
GO:0070878
ISO
PLAZA Integrative Orthologyprimary miRNA binding AT5G23080
GO:0070883
ISO
PLAZA Integrative Orthologypre-miRNA binding AT5G23080
GO:0140326
ISO
PLAZA Homology (enrichment)ATPase-coupled intramembrane lipid transporter activity HOM05D000251
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT5G23080
GO:0005524
ISO
PLAZA Homology (enrichment)ATP binding HOM05D000251
GO:0000166
ISO
PLAZA Homology (enrichment)nucleotide binding HOM05D000251
GO:0000287
ISO
PLAZA Homology (enrichment)magnesium ion binding HOM05D000251
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0016887
ISO
PLAZA Homology (enrichment)ATP hydrolysis activity HOM05D000251

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016021
ISO
PLAZA Homology (enrichment)integral component of membrane HOM05D000251
GO:0005634
IBA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000061 SWAP/Surp
IPR035967 SWAP/Surp superfamily
IPR011666 G patch domain-containing protein, N-terminal
Mapman id Description
16.9.2.1.4 RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component TOUGH