Gene: FAN18G2230
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN18G2230
- Transcript Identifier FAN18G2230.1
- Gene Type Coding gene
- Location Fvb5-1 : 8196243-8209428 : positive
Gene Family Information
- ID HOM05D000251
- #Genes/#Species 1696/100
- Phylogenetic origin
- ID ORTHO05D007889
- #Genes/#Species 125/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id maker-Fvb5-1-augustus-gene-82.41.v1.0.a1
- pacid 50497706
Descriptions
- Description PF00122//PF01805//PF07713//PF12710//PF16209//PF16212 - E1-E2 ATPase (E1-E2_ATPase) // Surp module (Surp) // Protein of unknown function (DUF1604) (DUF1604) // haloacid dehalogenase-like hydrolase (HAD) // Phospholipid-translocating ATPase N-terminal (PhoLip_ATPase_N) // Phospholipid-translocating P-type ATPase C-terminal (PhoLip_ATPase_C)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009734 | ISO | PLAZA Integrative Orthology | auxin-activated signaling pathway | AT5G23080 |
| GO:0030422 | ISO | PLAZA Integrative Orthology | production of siRNA involved in RNA interference | AT5G23080 |
| GO:0035196 | ISO | PLAZA Integrative Orthology | production of miRNAs involved in gene silencing by miRNA | AT5G23080 |
| GO:0010087 | ISO | PLAZA Integrative Orthology | phloem or xylem histogenesis | AT5G23080 |
| GO:0009926 | ISO | PLAZA Integrative Orthology | auxin polar transport | AT5G23080 |
| GO:0015914 | IEA | InterPro | phospholipid transport | |
| GO:0006396 | IEA | InterPro | RNA processing | |
| GO:0006397 | IEA | InterPro | mRNA processing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016887 | IEA | InterPro | ATP hydrolysis activity | |
| GO:0070878 | ISO | PLAZA Integrative Orthology | primary miRNA binding | AT5G23080 |
| GO:0070883 | ISO | PLAZA Integrative Orthology | pre-miRNA binding | AT5G23080 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G23080 |
| GO:0000166 | IEA | InterPro | nucleotide binding | |
| GO:0005215 | IEA | InterPro | transporter activity | |
| GO:0140326 | IEA | InterPro | ATPase-coupled intramembrane lipid transporter activity | |
| GO:0005524 | IEA | InterPro | ATP binding | |
| GO:0000287 | IEA | InterPro | magnesium ion binding | |
| GO:0003723 | IEA | InterPro | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G23080 |
| GO:0016021 | IEA | InterPro | integral component of membrane |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR023299 | P-type ATPase, cytoplasmic domain N |
| IPR008250 | P-type ATPase, A domain superfamily |
| IPR011666 | G patch domain-containing protein, N-terminal |
| IPR035967 | SWAP/Surp superfamily |
| IPR023214 | HAD superfamily |
| IPR006539 | P-type ATPase, subfamily IV |
| IPR032631 | P-type ATPase, N-terminal |
| IPR036412 | HAD-like superfamily |
| IPR023298 | P-type ATPase, transmembrane domain superfamily |
| IPR001757 | P-type ATPase |
| IPR000061 | SWAP/Surp |
| IPR044492 | P-type ATPase, haloacid dehalogenase domain |
| IPR032630 | P-type ATPase, C-terminal |
| Mapman id | Description |
|---|---|
| 16.9.2.1.4 | RNA processing.mRNA silencing.miRNA pathway.DCL1-HYL1 miRNA biogenesis complex.component TOUGH |
| 24.1.2.4.1.1 | Solute transport.primary active transport.P-type ATPase superfamily.P4 family.phospholipid flippase complex.P4-type ATPase component ALA |
| 5.8.2.1.1.1 | Lipid metabolism.lipid trafficking.endoplasmic reticulum-plastid lipid transfer.phospholipid transverse translocation.ALA-ALIS flippase complex.P4-type ATPase component ALA |