Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g093880.3 Solanum lycopersicum HOM05D005564 ORTHO05D006872 3.4e-145 518.5 288 100.0
Sopen03g024760 Solanum pennellii HOM05D005564 ORTHO05D006872 8.0e-139 497.3 288 96.5
PGSC0003DMG400008328 Solanum tuberosum HOM05D005564 ORTHO05D006872 3.6e-131 471.9 288 92.7
Nitab4.5_0003973g0040 Nicotiana tabacum HOM05D005564 ORTHO05D006872 2.6e-121 439.1 291 78.7
CAN.G309.23 Capsicum annuum HOM05D005564 ORTHO05D006872 1.7e-120 436.4 289 86.2
Peaxi162Scf00073g01727 Petunia axillaris HOM05D005564 ORTHO05D006872 1.6e-107 393.3 288 74.7
QL09p027441 Quercus lobata HOM05D005564 ORTHO05D006872 1.4e-95 353.6 288 70.1
Manes.06G130000 Manihot esculenta HOM05D005564 ORTHO05D006872 7.1e-95 351.3 292 62.0
Cfa013601 Carpinus fangiana HOM05D005564 ORTHO05D006872 1.8e-93 346.7 290 61.7
MD07G1241800 Malus domestica HOM05D005564 ORTHO05D006872 3.0e-93 345.9 290 63.4
FvH4_7g26720 Fragaria vesca HOM05D005564 ORTHO05D006872 8.7e-93 344.4 288 62.5
Hma1.2p1_1014F.1_g247960 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 3.3e-92 342.4 289 62.3
Hma1.2p1_1305F.1_g274526 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 3.3e-92 342.4 289 62.3
GSVIVG01024470001 Vitis vinifera HOM05D005564 ORTHO05D006872 7.4e-92 341.3 288 67.4
CiPaw.07G183300 Carya illinoinensis HOM05D005564 ORTHO05D006872 1.3e-91 340.5 233 70.4
Atru.chr6.1979 Acer truncatum HOM05D005564 ORTHO05D006872 2.1e-91 339.7 297 66.3
Atru.chr6.2007 Acer truncatum HOM05D005564 ORTHO05D006872 2.1e-91 339.7 297 66.3
TAR629G2772 Trochodendron aralioides HOM05D005564 ORTHO05D006872 2.1e-91 339.7 247 66.4
Duzib084G1177 Durio zibethinus HOM05D005564 ORTHO05D006872 1.1e-90 337.4 291 59.8
MD07G1243700 Malus domestica HOM05D005564 ORTHO05D006872 1.1e-90 337.4 290 64.8
Gohir.A13G032000 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.4e-90 337.0 292 59.6
Prupe.2G270700 Prunus persica HOM05D005564 ORTHO05D006872 1.4e-90 337.0 286 65.0
Thecc.03G145600 Theobroma cacao HOM05D005564 ORTHO05D006872 1.4e-90 337.0 290 61.4
Gohir.D07G048900 Gossypium hirsutum HOM05D005564 ORTHO05D006872 5.3e-90 335.1 292 59.6
Gorai.001G052100 Gossypium raimondii HOM05D005564 ORTHO05D006872 6.9e-90 334.7 292 59.2
HanXRQChr08g0221891 Helianthus annuus HOM05D005564 ORTHO05D006872 9.0e-90 334.3 288 59.4
CANSAT56G0249 Cannabis sativa HOM05D005564 ORTHO05D006872 3.4e-89 332.4 289 60.6
CSS0008072 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 4.5e-89 332.0 289 61.2
THA.LOC104825050 Tarenaya hassleriana HOM05D005564 ORTHO05D006872 5.8e-89 331.6 291 59.5
HanXRQChr08g0223121 Helianthus annuus HOM05D005564 ORTHO05D006872 7.6e-89 331.3 288 59.4
Sabra15G0133100 Salix brachista HOM05D005564 ORTHO05D006872 1.3e-88 330.5 291 58.8
Haze_22223 Corylus avellana HOM05D005564 ORTHO05D006872 4.9e-88 328.6 286 60.8
SGA_v2.0_scaffold60G20845 Striga asiatica HOM05D005564 ORTHO05D006872 6.5e-88 328.2 289 65.1
Cpa.g.sc13.231 Carica papaya HOM05D005564 ORTHO05D006872 1.1e-87 327.4 295 58.3
Potri.015G111628 Populus trichocarpa HOM05D005564 ORTHO05D006872 1.4e-87 327.0 290 57.6
Gorai.007G289400 Gossypium raimondii HOM05D005564 ORTHO05D006872 2.5e-87 326.2 291 58.1
TWI39G1038 Tripterygium wilfordii HOM05D005564 ORTHO05D006872 2.5e-87 326.2 290 63.8
Migut.F00541 Erythranthe guttata HOM05D005564 ORTHO05D006872 3.2e-87 325.9 291 58.4
Cc00_g13030 Coffea canephora HOM05D005564 ORTHO05D006872 9.3e-87 324.3 244 62.7
Gorai.005G129900 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.6e-86 323.6 292 57.9
Lj8A49G34 Lonicera japonica HOM05D005564 ORTHO05D006872 2.1e-86 323.2 300 65.3
MSTRG.27230 Avicennia marina HOM05D005564 ORTHO05D006872 3.5e-86 322.4 289 57.1
Dinv34536 Davidia involucrata HOM05D005564 ORTHO05D006872 3.5e-86 322.4 272 61.0
vmacro19959 Vaccinium macrocarpon HOM05D005564 ORTHO05D006872 1.3e-85 320.5 287 59.6
Oeu030874.1 Olea europaea HOM05D005564 ORTHO05D006872 2.3e-85 319.7 288 58.0
TPR.G39148 Trifolium pratense HOM05D005564 ORTHO05D006872 6.7e-85 318.2 304 54.6
AT5G51170 Arabidopsis thaliana HOM05D005564 ORTHO05D006872 8.7e-85 317.8 288 57.6
CARHR256880 Cardamine hirsuta HOM05D005564 ORTHO05D006872 1.9e-84 316.6 296 57.1
AL8G25430 Arabidopsis lyrata HOM05D005564 ORTHO05D006872 2.5e-84 316.2 294 58.2
Ciclev10032148m.g Citrus clementina HOM05D005564 ORTHO05D006872 2.5e-84 316.2 320 54.4
Ah.08g213710 Amaranthus hybridus HOM05D005564 ORTHO05D006872 3.3e-84 315.8 248 62.1
Aa31LG3G7670 Aethionema arabicum HOM05D005564 ORTHO05D006872 7.4e-84 314.7 296 55.7
Medtr0053s0020 Medicago truncatula HOM05D005564 ORTHO05D006872 7.4e-84 314.7 247 60.7
Lalb_Chr19g0127411 Lupinus albus HOM05D005564 ORTHO05D006872 2.8e-83 312.8 286 57.3
Sp6g13380 Schrenkiella parvula HOM05D005564 ORTHO05D006872 4.8e-83 312.0 295 58.3
Thhalv10014247m.g Eutrema salsugineum HOM05D005564 ORTHO05D006872 6.3e-83 311.6 297 56.6
Glyma.01G079300 Glycine max HOM05D005564 ORTHO05D006872 6.3e-83 311.6 286 56.3
CsaV3_5G005020 Cucumis sativus L. HOM05D005564 ORTHO05D006872 8.2e-83 311.2 292 54.5
SalBow3G4594 Salvia bowleyana HOM05D005564 ORTHO05D006872 8.2e-83 311.2 286 55.9
BcaC04g20726 Brassica carinata HOM05D005564 ORTHO05D006872 1.4e-82 310.5 295 56.6
BolC9t56884H Brassica oleracea HOM05D005564 ORTHO05D006872 1.4e-82 310.5 295 56.6
Carub.0008s1121 Capsella rubella HOM05D005564 ORTHO05D006872 1.4e-82 310.5 296 56.4
Eucgr.A02932 Eucalyptus grandis HOM05D005564 ORTHO05D006872 1.4e-82 310.5 247 60.7
Hund18321 Selenicereus undatus HOM05D005564 ORTHO05D006872 1.8e-82 310.1 276 65.9
Nn6g33765 Nelumbo nucifera HOM05D005564 ORTHO05D006872 2.4e-82 309.7 285 62.1
C09p39850 Brassica napus HOM05D005564 ORTHO05D006872 3.1e-82 309.3 295 56.3
Lj1g0017373 Lotus japonicus HOM05D005564 ORTHO05D006872 3.1e-82 309.3 286 56.3
ECA233G5472 Erigeron canadensis HOM05D005564 ORTHO05D006872 4.1e-82 308.9 266 61.3
BraSC35t46004Z Brassica rapa HOM05D005564 ORTHO05D006872 5.3e-82 308.5 295 56.3
ClCG01G004820 Citrullus lanatus HOM05D005564 ORTHO05D006872 6.9e-82 308.1 248 61.3
A10p07960 Brassica napus HOM05D005564 ORTHO05D006872 1.2e-81 307.4 295 55.9
CSS0031726 Camellia sinensis var. sinensis HOM05D005564 ORTHO05D006872 1.2e-81 307.4 247 61.5
PSO063G5398 Papaver somniferum HOM05D005564 ORTHO05D006872 2.0e-81 306.6 287 53.3
EL10Ac7g17720 Beta vulgaris HOM05D005564 ORTHO05D006872 4.5e-81 305.4 345 48.7
VMungo1383G3643 Vigna mungo HOM05D005564 ORTHO05D006872 1.0e-80 304.3 286 55.6
COL.COLO4_37310 Corchorus olitorius HOM05D005564 ORTHO05D006872 1.3e-80 303.9 263 58.9
TAR636G1392 Trochodendron aralioides HOM05D005564 ORTHO05D008130 5.0e-80 302.0 274 57.7
BcaB08g35471 Brassica carinata HOM05D005564 ORTHO05D006872 8.5e-80 301.2 296 55.1
DCAR_020165 Daucus carota HOM05D005564 ORTHO05D006872 8.5e-80 301.2 283 55.1
Sed0010204 Sechium edule HOM05D005564 ORTHO05D006872 8.5e-80 301.2 228 62.7
FAN03G1301 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.5e-79 298.5 263 60.8
Phvul.008G143300 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 7.2e-79 298.1 285 53.7
arahy.Tifrunner.gnm1.ann1.2T0BFY Arachis hypogaea HOM05D005564 ORTHO05D006872 9.3e-79 297.7 286 53.5
Ca_27086_v3 Cicer arietinum L. HOM05D005564 ORTHO05D006872 9.3e-79 297.7 275 57.8
PGR042G2925 Punica granatum HOM05D005564 ORTHO05D006872 2.7e-78 296.2 291 54.0
FAN06G0976 Fragaria x ananassa HOM05D005564 ORTHO05D006872 3.6e-78 295.8 263 58.6
MD01G1175500 Malus domestica HOM05D005564 ORTHO05D006872 6.1e-78 295.0 317 51.4
Phvul.005G030000 Phaseolus vulgaris HOM05D005564 ORTHO05D006872 1.8e-77 293.5 286 54.9
Gohir.A07G044400 Gossypium hirsutum HOM05D005564 ORTHO05D006872 1.1e-76 290.8 258 57.0
MD07G1244900 Malus domestica HOM05D005564 ORTHO05D006872 1.9e-76 290.0 207 67.1
PSO017G2767 Papaver somniferum HOM05D005564 ORTHO05D006872 1.9e-76 290.0 233 57.9
Zm00001eb249040 Zea mays HOM05D005564 ORTHO05D006872 2.5e-76 289.7 283 53.0
CDE02G1506 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 1.6e-75 287.0 288 53.1
PSO782G4004 Papaver somniferum HOM05D005564 ORTHO05D006872 6.3e-75 285.0 287 50.9
ClCG09G010750 Citrullus lanatus HOM05D005564 ORTHO05D006872 3.1e-74 282.7 229 60.3
Gorai.013G121700 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.2e-73 280.8 251 57.8
VMungo1080G0069 Vigna mungo HOM05D005564 ORTHO05D006872 1.5e-73 280.4 327 48.0
SHI14145 Sapria himalayana HOM05D005564 ORTHO05D000001 8.5e-72 274.6 276 54.0
ATR0188G007 Amborella trichopoda HOM05D005564 ORTHO05D006872 1.1e-71 274.2 238 57.1
Rhsim03G0157100 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.5e-71 273.1 239 58.6
Nitab4.5_0000103g0380 Nicotiana tabacum HOM05D005564 ORTHO05D006872 3.2e-71 272.7 160 85.0
AUR62008825 Chenopodium quinoa HOM05D005564 ORTHO05D006872 1.4e-69 267.3 208 60.6
RcHm_v2.0_Chr1g0373311 Rosa chinensis HOM05D005564 ORTHO05D006872 3.9e-69 265.8 221 62.4
AUR62025416 Chenopodium quinoa HOM05D005564 ORTHO05D006872 4.4e-68 262.3 213 59.2
FAN01G2799 Fragaria x ananassa HOM05D005564 ORTHO05D006872 2.4e-66 256.5 294 48.0
FAN10G0633 Fragaria x ananassa HOM05D005564 ORTHO05D006872 5.9e-65 251.9 221 61.5
unitig_21.g20780 Utricularia gibba HOM05D005564 ORTHO05D006872 1.2e-62 244.2 248 52.8
MELO3C005454.2 Cucumis melo HOM05D005564 ORTHO05D006872 3.6e-62 242.7 225 55.6
SEGI_35477 Sequoiadendron giganteum HOM05D005564 ORTHO05D006872 2.0e-60 236.9 278 47.8
CAN.G1016.1 Capsicum annuum HOM05D005564 ORTHO05D006872 1.6e-57 227.3 122 86.9
Os02g0651000 Oryza sativa ssp. japonica HOM05D005564 ORTHO05D006872 1.2e-54 217.6 189 55.6
MD07G1243300 Malus domestica HOM05D005564 ORTHO05D006872 9.7e-52 208.0 231 58.4
Hma1.2p1_1014F.1_g247920 Hydrangea macrophylla HOM05D005564 ORTHO05D006872 4.8e-51 205.7 181 57.5
Sc19g0002740 Simmondsia chinensis HOM05D005564 ORTHO05D006872 6.3e-51 205.3 201 53.7
MD07G1245400 Malus domestica HOM05D005564 ORTHO05D006872 5.3e-50 202.2 148 68.2
SMO145G0164 Selaginella moellendorffii HOM05D005564 ORTHO05D006872 9.1e-50 201.4 246 41.9
Medtr0092s0090 Medicago truncatula HOM05D005564 ORTHO05D006872 5.9e-49 198.7 158 62.0
Nn6g32633 Nelumbo nucifera HOM05D005564 ORTHO05D006872 1.0e-48 198.0 202 59.9
AagrBONN_evm.TU.Sc2ySwM_228.2399 Anthoceros agrestis HOM05D005564 ORTHO05D006872 3.8e-48 196.1 242 40.5
Gorai.006G046400 Gossypium raimondii HOM05D005564 ORTHO05D006872 1.5e-47 194.1 222 49.5
CANSAT78G0945 Cannabis sativa HOM05D005564 ORTHO05D006872 9.4e-47 191.4 243 43.2
Aqoxy3G02663 Aquilegia oxysepala HOM05D005564 ORTHO05D006872 8.3e-43 178.3 127 65.4
Dinv34539 Davidia involucrata HOM05D005564 ORTHO05D006872 5.9e-41 172.2 284 40.1
arahy.Tifrunner.gnm1.ann1.R6MN5Z Arachis hypogaea HOM05D005564 ORTHO05D006872 7.7e-41 171.8 274 38.3
Rhsim03G0158000 Rhododendron simsii HOM05D005564 ORTHO05D006872 2.9e-40 169.9 240 43.3
Pp3c13_1340 Physcomitrium patens HOM05D005564 ORTHO05D006872 2.5e-39 166.8 199 43.7
Lsat_1_v5_gn_8_13861 Lactuca sativa HOM05D000071 ORTHO05D006872 5.2e-37 159.1 119 61.3
Prupe.4G133000 Prunus persica HOM05D005564 ORTHO05D006872 9.8e-36 154.8 170 50.0
Gohir.D02G135666 Gossypium hirsutum HOM05D005564 ORTHO05D006872 8.3e-35 151.8 107 65.4
CDE11G0070 Ceratophyllum demersum HOM05D005564 ORTHO05D006872 7.0e-34 148.7 118 61.9
CBR_g31024 Chara braunii HOM05D005564 ORTHO05D006872 1.7e-32 144.1 274 34.3
Nn6g32636 Nelumbo nucifera HOM05D005564 ORTHO05D006872 3.5e-25 119.8 85 67.1
Psat3g166160 Pisum sativum HOM05D005564 ORTHO05D006872 4.6e-25 119.4 159 42.1
Psat3g164240 Pisum sativum HOM05D005564 ORTHO05D006872 1.3e-24 117.9 141 48.2
Gohir.D02G130966 Gossypium hirsutum HOM05D005564 ORTHO05D006872 3.0e-24 116.7 99 57.6
Mapoly0036s0004 Marchantia polymorpha HOM05D005564 ORTHO05D006872 8.6e-16 88.6 134 41.8
MCO11G677 Micromonas commoda HOM05D005564 ORTHO05D006872 2.1e-14 84.0 234 26.9
Cre01.g041900 Chlamydomonas reinhardtii HOM05D005564 ORTHO05D006872 4.7e-14 82.8 209 28.7
Aqoxy3G02664 Aquilegia oxysepala HOM05D000665 ORTHO05D000140 1.6e-06 57.8 83 63.9


User provided reference genes

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