Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g043970.3 Solanum lycopersicum HOM05D003401 ORTHO05D003906 2.3e-119 432.2 210 100.0
PGSC0003DMG400009062 Solanum tuberosum HOM05D003401 ORTHO05D003906 4.4e-94 348.2 188 87.2
Sopen03g007790 Solanum pennellii HOM05D003401 ORTHO05D003906 3.7e-93 345.1 188 86.7
CAN.G278.15 Capsicum annuum HOM05D003401 ORTHO05D003906 1.4e-79 300.1 172 82.0
Nitab4.5_0001417g0040 Nicotiana tabacum HOM05D003401 ORTHO05D003906 6.8e-79 297.7 194 74.7
Peaxi162Scf00118g01926 Petunia axillaris HOM05D003401 ORTHO05D003906 2.6e-78 295.8 192 72.4
Nitab4.5_0006813g0020 Nicotiana tabacum HOM05D003401 ORTHO05D003906 7.3e-73 277.7 172 77.9
CAN.G1075.38 Capsicum annuum HOM05D003401 ORTHO05D003906 2.0e-70 269.6 190 68.9
Nitab4.5_0002119g0060 Nicotiana tabacum HOM05D003401 ORTHO05D003906 3.7e-69 265.4 190 68.4
Nitab4.5_0000142g0060 Nicotiana tabacum HOM05D003401 ORTHO05D003906 5.4e-68 261.5 190 66.3
Sopen02g036910 Solanum pennellii HOM05D003401 ORTHO05D003906 1.3e-66 256.9 193 63.2
Cfa004133 Carpinus fangiana HOM05D003401 ORTHO05D003906 3.9e-66 255.4 207 59.4
PGSC0003DMG400021417 Solanum tuberosum HOM05D003401 ORTHO05D003906 5.1e-66 255.0 190 65.8
Peaxi162Scf00548g00653 Petunia axillaris HOM05D003401 ORTHO05D003906 2.5e-65 252.7 164 73.2
Oeu017643.1 Olea europaea HOM05D003401 ORTHO05D003906 3.3e-65 252.3 193 61.1
Solyc02g092360.3 Solanum lycopersicum HOM05D003401 ORTHO05D003906 4.3e-65 251.9 193 62.2
CSS0025614 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 2.4e-63 246.1 194 59.3
CSS0041603 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 3.1e-63 245.7 194 58.8
DCAR_010819 Daucus carota HOM05D003401 ORTHO05D003906 7.6e-62 241.1 194 60.3
FAN26G0363 Fragaria x ananassa HOM05D003401 ORTHO05D003906 9.9e-62 240.7 193 58.5
FAN19G2988 Fragaria x ananassa HOM05D003401 ORTHO05D003906 1.7e-61 240.0 191 59.7
FAN28G1357 Fragaria x ananassa HOM05D003401 ORTHO05D003906 1.7e-61 240.0 193 58.5
RcHm_v2.0_Chr2g0108051 Rosa chinensis HOM05D003401 ORTHO05D003906 1.7e-61 240.0 164 65.9
Gorai.008G083400 Gossypium raimondii HOM05D003401 ORTHO05D003906 1.4e-60 236.9 194 58.2
FvH4_1g17720 Fragaria vesca HOM05D003401 ORTHO05D003906 1.9e-60 236.5 164 65.2
Gohir.A12G077500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.9e-60 236.5 194 57.7
Haze_15282 Corylus avellana HOM05D003401 ORTHO05D003906 2.4e-60 236.1 184 61.4
AUR62004010 Chenopodium quinoa HOM05D003401 ORTHO05D003906 3.2e-60 235.7 194 59.8
AUR62040237 Chenopodium quinoa HOM05D003401 ORTHO05D003906 3.2e-60 235.7 194 59.8
Sabra05G0118500 Salix brachista HOM05D003401 ORTHO05D003906 3.2e-60 235.7 192 57.8
Dinv26932 Davidia involucrata HOM05D003401 ORTHO05D003906 5.4e-60 235.0 194 57.7
Ciclev10025552m.g Citrus clementina HOM05D003401 ORTHO05D003906 7.1e-60 234.6 194 57.2
MELO3C020910.2 Cucumis melo HOM05D003401 ORTHO05D003906 7.1e-60 234.6 193 58.5
Prupe.6G220400 Prunus persica HOM05D003401 ORTHO05D003906 7.1e-60 234.6 155 68.4
MSTRG.23670 Avicennia marina HOM05D003401 ORTHO05D003906 1.2e-59 233.8 193 58.5
Lj4A163G75 Lonicera japonica HOM05D003401 ORTHO05D003906 1.2e-59 233.8 195 58.5
MD02G1186200 Malus domestica HOM05D003401 ORTHO05D003906 1.2e-59 233.8 193 56.5
VMungo1215G2501 Vigna mungo HOM05D003401 ORTHO05D003906 1.2e-59 233.8 194 56.2
CiPaw.02G002500 Carya illinoinensis HOM05D003401 ORTHO05D003906 2.1e-59 233.0 165 63.0
EL10Ac6g15618 Beta vulgaris HOM05D003401 ORTHO05D003906 4.6e-59 231.9 194 58.2
ClCG02G012620 Citrullus lanatus HOM05D003401 ORTHO05D003906 4.6e-59 231.9 193 57.5
SalBow3G0329 Salvia bowleyana HOM05D003401 ORTHO05D003906 4.6e-59 231.9 164 66.5
Manes.12G114200 Manihot esculenta HOM05D003401 ORTHO05D003906 6.0e-59 231.5 194 58.2
Atru.chr3.1011_Atru.chr3.1012 Acer truncatum HOM05D003401 ORTHO05D003906 2.3e-58 229.6 194 56.2
Lalb_Chr05g0213711 Lupinus albus HOM05D003401 ORTHO05D003906 2.3e-58 229.6 196 57.7
Potri.005G148800 Populus trichocarpa HOM05D003401 ORTHO05D003906 2.3e-58 229.6 178 61.8
Sed0014153 Sechium edule HOM05D003401 ORTHO05D003906 2.3e-58 229.6 193 56.0
TWI53G1432 Tripterygium wilfordii HOM05D003401 ORTHO05D003906 2.3e-58 229.6 193 56.0
CSS0017127 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 3.9e-58 228.8 196 57.1
Thecc.01G072800 Theobroma cacao HOM05D003401 ORTHO05D003906 5.1e-58 228.4 165 65.5
Ah.03g140570 Amaranthus hybridus HOM05D003401 ORTHO05D003906 1.9e-57 226.5 192 58.3
Phvul.002G010600 Phaseolus vulgaris HOM05D003401 ORTHO05D003906 2.5e-57 226.1 194 54.6
TAR381G1581 Trochodendron aralioides HOM05D003401 ORTHO05D003906 3.3e-57 225.7 194 57.2
Dinv04047 Davidia involucrata HOM05D003401 ORTHO05D003906 5.6e-57 224.9 165 62.4
Glyma.01G194300 Glycine max HOM05D003401 ORTHO05D003906 5.6e-57 224.9 194 54.1
THA.LOC104821200 Tarenaya hassleriana HOM05D003401 ORTHO05D003906 5.6e-57 224.9 192 58.3
Glyma.11G047600 Glycine max HOM05D003401 ORTHO05D003906 1.6e-56 223.4 194 54.1
Cc07_g07100 Coffea canephora HOM05D003401 ORTHO05D003906 2.1e-56 223.0 193 56.5
ECA232G0883 Erigeron canadensis HOM05D003401 ORTHO05D003906 2.1e-56 223.0 194 56.2
Psat0s281g0040 Pisum sativum HOM05D003401 ORTHO05D003906 2.1e-56 223.0 196 55.6
MSTRG.2818 Avicennia marina HOM05D003401 ORTHO05D003906 2.8e-56 222.6 195 55.4
Eucgr.H02307 Eucalyptus grandis HOM05D003401 ORTHO05D003906 2.8e-56 222.6 194 55.7
Oeu011987.2 Olea europaea HOM05D003401 ORTHO05D003906 2.8e-56 222.6 164 62.2
Duzib147G0481 Durio zibethinus HOM05D003401 ORTHO05D003906 6.2e-56 221.5 165 63.6
Manes.13G111500 Manihot esculenta HOM05D003401 ORTHO05D003906 6.2e-56 221.5 165 62.4
Ca_24692_v3 Cicer arietinum L. HOM05D003401 ORTHO05D003906 8.1e-56 221.1 196 55.1
SGA_v2.0_scaffold15G07458 Striga asiatica HOM05D003401 ORTHO05D003906 8.1e-56 221.1 193 54.9
Lj2g0017752 Lotus japonicus HOM05D003401 ORTHO05D003906 1.1e-55 220.7 195 53.8
Actinidia36431 Actinidia chinensis HOM05D003401 ORTHO05D003906 1.4e-55 220.3 173 60.1
PGR004G2146 Punica granatum HOM05D003401 ORTHO05D003906 1.4e-55 220.3 194 55.7
MD15G1297600 Malus domestica HOM05D003401 ORTHO05D003906 4.0e-55 218.8 184 55.4
Sed0011165 Sechium edule HOM05D003401 ORTHO05D003906 5.3e-55 218.4 196 57.1
Duzib264G0307 Durio zibethinus HOM05D003401 ORTHO05D003906 1.5e-54 216.9 165 62.4
MD02G1186100 Malus domestica HOM05D003401 ORTHO05D003906 2.6e-54 216.1 164 60.4
HanXRQChr12g0373041 Helianthus annuus HOM05D003401 ORTHO05D003906 3.4e-54 215.7 191 52.9
Phvul.003G234900 Phaseolus vulgaris HOM05D003401 ORTHO05D003906 4.4e-54 215.3 195 52.8
Hund16401 Selenicereus undatus HOM05D003401 ORTHO05D003906 5.8e-54 214.9 191 57.6
Lsat_1_v5_gn_4_161660 Lactuca sativa HOM05D003401 ORTHO05D003906 9.9e-54 214.2 190 51.1
Aa31LG4G18330 Aethionema arabicum HOM05D003401 ORTHO05D003906 1.3e-53 213.8 190 55.3
Glyma.17G160700 Glycine max HOM05D003401 ORTHO05D003906 1.3e-53 213.8 194 51.0
GSVIVG01000105001 Vitis vinifera HOM05D003401 ORTHO05D003906 1.3e-53 213.8 129 74.4
Lalb_Chr09g0334091 Lupinus albus HOM05D003401 ORTHO05D003906 1.7e-53 213.4 192 52.6
Migut.H00347 Erythranthe guttata HOM05D003401 ORTHO05D003906 2.2e-53 213.0 165 62.4
Rhsim10G0099500 Rhododendron simsii HOM05D003401 ORTHO05D003906 4.9e-53 211.8 189 54.0
Aqoxy6G02609 Aquilegia oxysepala HOM05D003401 ORTHO05D003906 2.4e-52 209.5 194 51.5
ClCG02G012630 Citrullus lanatus HOM05D003401 ORTHO05D003906 3.2e-52 209.1 194 54.6
COL.COLO4_11578 Corchorus olitorius HOM05D003401 ORTHO05D003906 3.2e-52 209.1 185 56.8
Medtr5g015460 Medicago truncatula HOM05D003401 ORTHO05D003906 3.2e-52 209.1 196 53.6
VMungo0251G1011 Vigna mungo HOM05D003401 ORTHO05D003906 3.2e-52 209.1 195 52.3
Lj4g0026628 Lotus japonicus HOM05D003401 ORTHO05D003906 4.2e-52 208.8 166 57.8
HanXRQChr12g0373051 Helianthus annuus HOM05D003401 ORTHO05D003906 1.2e-51 207.2 163 56.4
TAR625G1105 Trochodendron aralioides HOM05D003401 ORTHO05D003906 1.6e-51 206.8 201 52.7
Eucgr.I00703 Eucalyptus grandis HOM05D003401 ORTHO05D003906 4.6e-51 205.3 194 56.2
Nn5g30596 Nelumbo nucifera HOM05D003401 ORTHO05D003906 4.6e-51 205.3 166 58.4
Sp5g12230 Schrenkiella parvula HOM05D003401 ORTHO05D003906 1.3e-50 203.8 202 51.5
Actinidia11982 Actinidia chinensis HOM05D003401 ORTHO05D003906 3.0e-50 202.6 132 68.9
CsaV3_2G016740 Cucumis sativus L. HOM05D003401 ORTHO05D003906 3.0e-50 202.6 193 50.3
CSS0028872 Camellia sinensis var. sinensis HOM05D003401 ORTHO05D003906 6.6e-50 201.4 159 60.4
BcaB05g23171 Brassica carinata HOM05D003401 ORTHO05D003906 1.9e-49 199.9 173 57.8
A01p24400 Brassica napus HOM05D003401 ORTHO05D003906 2.5e-49 199.5 174 55.7
BraA01t02353Z Brassica rapa HOM05D003401 ORTHO05D003906 4.3e-49 198.7 174 55.7
MELO3C020908.2 Cucumis melo HOM05D003401 ORTHO05D003906 4.3e-49 198.7 193 50.3
PSO675G1608 Papaver somniferum HOM05D003401 ORTHO05D003906 4.3e-49 198.7 167 56.9
Thhalv10010347m.g Eutrema salsugineum HOM05D003401 ORTHO05D003906 7.3e-49 198.0 174 56.3
Sc16g0002870 Simmondsia chinensis HOM05D003401 ORTHO05D003906 7.3e-49 198.0 118 73.7
AT3G49880 Arabidopsis thaliana HOM05D003401 ORTHO05D003906 2.1e-48 196.4 194 53.6
THA.LOC104827628 Tarenaya hassleriana HOM05D003401 ORTHO05D003906 2.1e-48 196.4 193 54.4
Carub.0005s1624 Capsella rubella HOM05D003401 ORTHO05D003906 2.8e-48 196.1 172 57.6
A09p43030 Brassica napus HOM05D003401 ORTHO05D003906 1.4e-47 193.7 188 54.3
BraA09t39772Z Brassica rapa HOM05D003401 ORTHO05D003906 1.4e-47 193.7 188 54.3
ATR1153G046 Amborella trichopoda HOM05D003401 ORTHO05D003906 3.1e-47 192.6 197 51.3
C08p24910 Brassica napus HOM05D003401 ORTHO05D003906 4.0e-47 192.2 188 53.7
BolC8t50109H Brassica oleracea HOM05D003401 ORTHO05D003906 4.0e-47 192.2 188 53.7
AL5G29890 Arabidopsis lyrata HOM05D003401 ORTHO05D003906 5.3e-47 191.8 193 51.8
BcaB01g00655 Brassica carinata HOM05D003401 ORTHO05D003906 9.0e-47 191.0 188 52.7
BcaC07g39454 Brassica carinata HOM05D003401 ORTHO05D003906 1.2e-46 190.7 189 52.9
Gohir.D03G028900 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.5e-46 190.3 165 57.0
Aa31LG1G16090 Aethionema arabicum HOM05D003401 ORTHO05D003906 2.0e-46 189.9 199 49.7
CARHR158960 Cardamine hirsuta HOM05D003401 ORTHO05D003906 2.0e-46 189.9 172 54.7
PGR102G3082 Punica granatum HOM05D003401 ORTHO05D003906 2.0e-46 189.9 200 50.0
arahy.Tifrunner.gnm1.ann1.DKM4K2 Arachis hypogaea HOM05D003401 ORTHO05D003906 5.8e-46 188.3 196 48.5
BcaC09g49981 Brassica carinata HOM05D003401 ORTHO05D003906 9.9e-46 187.6 173 53.8
C01p30420 Brassica napus HOM05D003401 ORTHO05D003906 9.9e-46 187.6 173 53.8
BolC1t02985H Brassica oleracea HOM05D003401 ORTHO05D003906 9.9e-46 187.6 173 53.8
Gohir.A02G151500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.7e-45 186.8 165 56.4
Gorai.003G030500 Gossypium raimondii HOM05D003401 ORTHO05D003906 1.7e-45 186.8 165 56.4
Cpa.g.sc6.15 Carica papaya HOM05D003401 ORTHO05D003906 2.9e-45 186.0 136 64.0
unitig_899.g14895 Utricularia gibba HOM05D003401 ORTHO05D003906 1.1e-44 184.1 118 67.8
AL8G43760 Arabidopsis lyrata HOM05D003401 ORTHO05D003906 3.2e-44 182.6 197 48.2
Sp2g29110 Schrenkiella parvula HOM05D003401 ORTHO05D003906 9.3e-44 181.0 196 49.0
PSO017G3176 Papaver somniferum HOM05D003401 ORTHO05D003906 2.7e-43 179.5 191 48.2
PSO541G4016 Papaver somniferum HOM05D003401 ORTHO05D003906 2.7e-43 179.5 129 62.8
C03p59600 Brassica napus HOM05D003401 ORTHO05D003906 1.0e-42 177.6 172 51.7
BolC3t18223H Brassica oleracea HOM05D003401 ORTHO05D003906 1.0e-42 177.6 172 51.7
Ca_22105_v3 Cicer arietinum L. HOM05D003401 ORTHO05D003906 1.0e-42 177.6 169 51.5
AT5G67540 Arabidopsis thaliana HOM05D003401 ORTHO05D003906 1.3e-42 177.2 196 47.4
PSO170G0024 Papaver somniferum HOM05D003401 ORTHO05D003906 2.3e-42 176.4 191 48.2
CARHR280060 Cardamine hirsuta HOM05D003401 ORTHO05D003906 3.9e-42 175.6 202 46.5
A06p32870 Brassica napus HOM05D003401 ORTHO05D003906 5.1e-42 175.3 173 51.4
Nitab4.5_0001401g0210 Nicotiana tabacum HOM05D003401 ORTHO05D003906 1.1e-41 174.1 164 51.8
BraA06t26219Z Brassica rapa HOM05D003401 ORTHO05D003906 1.9e-41 173.3 173 50.9
Carub.0008s2693 Capsella rubella HOM05D003401 ORTHO05D003906 1.9e-41 173.3 175 49.1
SGA_v2.0_scaffold90G27720 Striga asiatica HOM05D003401 ORTHO05D003906 2.5e-41 172.9 164 52.4
TPR.G9942 Trifolium pratense HOM05D003401 ORTHO05D003906 3.3e-41 172.6 195 44.1
arahy.Tifrunner.gnm1.ann1.Q6V9VS Arachis hypogaea HOM05D003401 ORTHO05D003906 5.6e-41 171.8 189 46.6
Thhalv10004148m.g Eutrema salsugineum HOM05D003401 ORTHO05D003906 5.6e-41 171.8 190 49.5
CDE06G2486 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 2.8e-40 169.5 164 51.2
PGSC0003DMG400025929 Solanum tuberosum HOM05D003401 ORTHO05D003906 2.8e-40 169.5 165 51.5
Peaxi162Scf00016g10134 Petunia axillaris HOM05D003401 ORTHO05D003906 3.7e-40 169.1 169 50.3
Solyc01g109050.2 Solanum lycopersicum HOM05D003401 ORTHO05D003906 4.8e-40 168.7 166 50.0
Sopen01g051250 Solanum pennellii HOM05D003401 ORTHO05D003906 8.1e-40 167.9 166 50.0
Nitab4.5_0008194g0090 Nicotiana tabacum HOM05D003401 ORTHO05D003906 1.8e-39 166.8 134 58.2
SGA_v2.0_scaffold169G38738 Striga asiatica HOM05D003401 ORTHO05D003906 4.0e-39 165.6 127 61.4
SGA_v2.0_scaffold32G13360 Striga asiatica HOM05D003401 ORTHO05D003906 4.0e-39 165.6 156 52.6
CAN.G322.85 Capsicum annuum HOM05D003401 ORTHO05D003906 9.0e-39 164.5 165 50.3
Cc02_g18210 Coffea canephora HOM05D003401 ORTHO05D003906 2.6e-38 162.9 172 51.2
CDE07G0805 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 3.4e-38 162.5 128 58.6
Os01g0879400 Oryza sativa ssp. japonica HOM05D003401 ORTHO05D003906 2.2e-37 159.8 194 43.8
TPR.G24262 Trifolium pratense HOM05D003401 ORTHO05D003906 5.5e-36 155.2 170 47.6
Zm00001eb007800 Zea mays HOM05D003401 ORTHO05D003906 5.5e-36 155.2 186 45.7
Os12g0406100 Oryza sativa ssp. japonica HOM05D003401 ORTHO05D003906 9.3e-36 154.5 143 50.3
Medtr4g097110 Medicago truncatula HOM05D003401 ORTHO05D003906 1.6e-35 153.7 169 47.9
Glyma.05G105700 Glycine max HOM05D003401 ORTHO05D003906 4.6e-35 152.1 216 41.2
Zm00001eb400800 Zea mays HOM05D003401 ORTHO05D003906 7.9e-35 151.4 152 50.7
CDE04G3602 Ceratophyllum demersum HOM05D003401 ORTHO05D003906 2.8e-32 142.9 96 61.5
Gohir.D12G075700 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.4e-31 140.6 77 74.0
Oeu054197.1 Olea europaea HOM05D003401 ORTHO05D003906 1.2e-30 137.5 76 73.7
Psat0s4670g0040 Pisum sativum HOM05D003401 ORTHO05D003906 2.9e-29 132.9 132 50.8
Oeu000281.1 Olea europaea HOM05D003401 ORTHO05D003906 3.8e-29 132.5 167 44.3
SalBow6G5146 Salvia bowleyana HOM05D003401 ORTHO05D003906 1.6e-27 127.1 165 44.8
Migut.B00291 Erythranthe guttata HOM05D003401 ORTHO05D003906 3.5e-27 125.9 95 58.9
SalBow6G2088 Salvia bowleyana HOM05D003401 ORTHO05D003906 3.0e-26 122.9 166 44.6
Zm00001eb145850 Zea mays HOM05D003401 ORTHO05D003906 1.5e-22 110.5 76 61.8
Gorai.011G214500 Gossypium raimondii HOM05D003401 ORTHO05D003906 5.9e-22 108.6 122 45.1
Gohir.A10G184500 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.0e-21 107.8 122 45.1
Gohir.D10G191700 Gossypium hirsutum HOM05D003401 ORTHO05D003906 1.3e-21 107.5 123 45.5
Pp3c24_13530 Physcomitrium patens HOM05D003401 ORTHO05D003906 6.5e-21 105.1 83 54.2
Nn1g04550 Nelumbo nucifera HOM05D003401 ORTHO05D003906 2.5e-20 103.2 77 57.1
Mapoly0190s0009 Marchantia polymorpha HOM05D003401 ORTHO05D003906 1.2e-19 100.9 82 52.4
SMO228G0195 Selaginella moellendorffii HOM05D003401 ORTHO05D003906 1.8e-18 97.1 94 47.9
Pp3c24_11410 Physcomitrium patens HOM05D003401 ORTHO05D003906 1.1e-17 94.4 83 49.4
SMO203G0154 Selaginella moellendorffii HOM05D003401 ORTHO05D003906 2.8e-16 89.7 97 47.4
CBR_g36888 Chara braunii HOM05D003401 ORTHO05D003906 1.3e-13 80.9 75 50.7
CBR_g103 Chara braunii HOM05D003401 ORTHO05D003906 1.7e-13 80.5 74 47.3
BcaB02g09914 Brassica carinata HOM05D003401 ORTHO05D003906 2.7e-11 73.2 70 48.6
HPP92_024897 Vanilla planifolia HOM05D003401 ORTHO05D003906 2.0e-09 67.0 133 33.1


User provided reference genes

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