Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 0.0e+00 3213.7 1628 100.0
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 0.0e+00 3132.8 1633 96.9
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 0.0e+00 2368.6 1472 82.6
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 0.0e+00 2342.0 1666 73.6
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 0.0e+00 2332.4 1646 75.5
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 0.0e+00 2274.6 1644 73.8
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 0.0e+00 1231.1 669 93.9
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 0.0e+00 1119.8 1416 46.6
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 7.2e-293 1011.5 1687 40.0
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 3.9e-291 1005.7 1659 40.1
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 1.3e-289 1000.7 1459 43.3
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 2.5e-285 986.5 1646 40.0
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 3.1e-280 969.5 1516 42.2
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 3.5e-271 939.5 1676 38.8
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 7.2e-269 931.8 1687 38.9
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 1.2e-268 931.0 1608 39.9
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 5.3e-264 915.6 1575 39.7
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.7e-262 910.6 1794 36.8
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 1.4e-256 891.0 1195 45.6
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 8.6e-254 881.7 1195 45.5
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 1.6e-252 877.5 1692 37.2
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 2.3e-251 873.6 1765 36.4
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 4.0e-251 872.8 1699 36.1
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 9.2e-248 861.7 1730 36.2
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 8.9e-243 845.1 1680 36.5
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 2.2e-241 840.5 1665 36.6
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 7.8e-239 832.0 1703 35.2
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 7.5e-234 815.5 1673 35.3
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 9.8e-234 815.1 1697 35.4
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 3.2e-232 810.1 1633 35.5
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 1.0e-230 805.1 1729 35.8
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 5.1e-230 802.7 1452 39.3
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 7.3e-229 798.9 1716 35.1
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 1.4e-227 794.7 1719 35.4
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 9.9e-226 788.5 1694 35.6
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 9.2e-224 781.9 1638 34.9
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 3.6e-220 770.0 1681 34.3
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 4.0e-219 766.5 1742 33.6
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 3.0e-214 750.4 1763 33.2
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 6.6e-214 749.2 1659 35.0
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 5.3e-211 739.6 1756 33.0
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 1.6e-207 728.0 1678 34.1
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 3.3e-205 720.3 1693 33.4
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 3.6e-204 716.8 1693 33.1
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 2.4e-203 714.1 1682 33.1
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 3.1e-203 713.8 1709 33.6
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 1.2e-202 711.8 1727 33.1
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 5.8e-202 709.5 1669 33.7
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 7.6e-202 709.1 1697 33.7
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 2.2e-201 707.6 1705 33.5
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 1.4e-200 704.9 1668 33.3
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 1.4e-200 704.9 1700 33.8
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 4.2e-200 703.4 1727 33.1
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 3.9e-198 696.8 1702 33.6
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 1.4e-192 678.3 1668 32.7
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 6.0e-191 672.9 1668 32.8
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 7.4e-189 666.0 1606 32.8
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 2.8e-188 664.1 1079 39.3
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 6.3e-188 662.9 1687 32.8
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 4.1e-187 660.2 829 47.9
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 4.5e-186 656.8 1696 32.4
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 6.5e-185 652.9 1688 32.1
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 6.5e-185 652.9 1691 32.3
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 8.4e-185 652.5 1671 32.5
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 4.6e-183 646.7 1707 31.6
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 2.8e-180 637.5 1742 31.6
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 1.1e-179 635.6 1743 31.4
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.4e-179 635.2 1683 30.8
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 4.1e-179 633.6 1655 31.9
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 1.0e-177 629.0 1670 32.2
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 2.5e-173 614.4 1702 30.3
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.4e-173 612.8 1662 32.0
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 9.4e-168 595.9 1653 31.3
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.7e-167 594.3 1664 31.8
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.8e-166 591.7 1744 30.2
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 6.7e-166 589.7 1684 31.5
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 1.7e-164 585.1 1683 31.1
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.0e-161 573.5 1654 30.8
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 1.4e-158 565.5 788 43.5
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 3.3e-157 560.8 1641 30.8
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 2.4e-155 554.7 741 45.9
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.4e-149 534.3 1081 35.3
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 2.1e-143 515.0 1655 28.6
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 8.3e-140 503.1 1667 27.8
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 5.9e-138 496.9 1661 27.8
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 3.7e-132 477.6 1803 27.2
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 5.4e-131 473.8 1587 29.0
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 9.2e-131 473.0 1000 34.1
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 9.5e-128 463.0 1451 30.1
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 2.3e-126 458.4 1577 28.7
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 6.8e-126 456.8 1471 28.9
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.7e-119 434.1 1244 31.2
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 2.4e-115 421.8 1439 27.7
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 1.4e-110 406.0 664 40.2
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 2.2e-108 398.7 662 40.9
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 1.5e-104 386.0 671 39.3
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 8.1e-103 380.2 816 34.8
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 1.5e-101 375.9 642 38.2
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 1.6e-95 355.9 815 33.7
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 2.1e-87 328.9 702 34.2
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 4.0e-86 324.7 699 34.8
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 4.9e-76 291.2 1647 23.3
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.9e-74 283.9 500 40.0
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 5.5e-51 208.0 598 31.6
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 5.2e-49 201.4 524 34.4
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 9.1e-46 190.7 542 29.5
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 6.1e-42 177.9 147 62.6
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 6.1e-42 177.9 463 31.3
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 2.5e-35 156.0 234 38.5
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 2.6e-32 146.0 208 39.9
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 1.6e-29 136.7 282 32.3
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 2.0e-29 136.3 224 35.7
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 2.9e-28 132.5 329 30.4
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 3.0e-25 122.5 169 43.2
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 7.5e-24 117.9 472 26.1
Oeu024225.1 Olea europaea HOM05D002251 ORTHO05D006775 1.7e-15 90.1 360 28.1
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 2.7e-13 82.8 193 31.6
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 1.1e-09 70.9 296 28.4
TPR.G17624 Trifolium pratense HOM05D005579 ORTHO05D006775 1.4e-09 70.5 137 33.6
Ah.07g206970 Amaranthus hybridus HOM05D005579 ORTHO05D006775 8.9e-09 67.8 161 33.5
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 1.2e-08 67.4 160 32.5
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 1.3e-07 63.9 129 33.3
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-07 63.9 129 33.3
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 3.7e-07 62.4 91 38.5
TPR.G31959 Trifolium pratense HOM05D061576 ORTHO05D006775 3.7e-07 62.4 134 29.1
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 6.4e-07 61.6 206 30.1
CBR_g61457 Chara braunii HOM05D005579 ORTHO05D006775 1.4e-06 60.5 233 27.5
SalBow1G5008 Salvia bowleyana HOM05D045082 ORTHO05D006775 1.9e-06 60.1 68 51.5
SalBow1G5207 Salvia bowleyana HOM05D045082 ORTHO05D006775 1.9e-06 60.1 68 51.5
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 3.2e-06 59.3 103 37.9
PSO339G5948 Papaver somniferum HOM05D007489 ORTHO05D008037 5.4e-06 58.5 141 31.9


User provided reference genes

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