Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG3G8710 LG-3 - View
Acer truncatum Atru.chr1.458 chr1 + View
Actinidia chinensis Actinidia32860 Lachesis_group22 + View
Actinidia chinensis Actinidia34112 Lachesis_group3 - View
Arabidopsis lyrata AL8G26680 scaffold_8 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.TEHT7Q PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 arahy.Tifrunner.gnm1.Arahy.05 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Q0IWYL PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 arahy.Tifrunner.gnm1.Arahy.15 - View
Arabidopsis thaliana AT5G52290 shortage in chiasmata 1 Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility. SHORTAGE IN CHIASMATA 1 (SHOC1)%3B Has 68 Blast hits to 59 proteins in 25 species: Archae - 0%3B Bacteria - 11%3B Metazoa - 8%3B Fungi - 4%3B Plants - 40%3B Viruses - 0%3B Other Eukaryotes - 5 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0680G156 AmTr_v1.0_scaffold00009 + View
Brassica carinata BcaC01g06176 ChrC01 - View
Brassica carinata BcaB01g04199 ChrB01 - View
Brassica napus A03p15740 A03 + View
Brassica napus C03p18410 C03 + View
Brassica oleracea BolC3t14238H C3 + View
Brassica rapa BraA03t10864Z A03 + View
Beta vulgaris EL10Ac3g05643 Chr3_EL10_PGA_scaffold7 + View
Camellia sinensis var. sinensis CSS0017636 PREDICTED: uncharacterized protein LOC104882205 isoform X2 [Vitis vinifera] Chr1 + View
Capsicum annuum CAN.G490.30 PGAv.1.6.scaffold490 - View
Cannabis sativa CANSAT21G2370 NC_044374.1 - View
Corylus avellana Haze_13709 Similar to SHOC1: Protein SHORTAGE IN CHIASMATA 1 (Arabidopsis thaliana OX%3D3702) 5 + View
Coffea canephora Cc02_g02990 Putative shortage in chiasmata 1 chr2 + View
Citrus clementina Ciclev10006492m.g scaffold_9 - View
Ceratophyllum demersum CDE08G0179 6 - View
Carpinus fangiana Cfa008319 Cfa03 - View
Cardamine hirsuta CARHR265270 Shortage in chiasmata 1 Chr8 - View
Carya illinoinensis CiPaw.04G071000 PTHR35764//PTHR35764:SF1 - FAMILY NOT NAMED // SHORTAGE IN CHIASMATA 1 Chr04 - View
Citrullus lanatus ClCG09G012930 shortage in chiasmata 1 LENGTH=1594 CG_Chr09 + View
Corchorus olitorius COL.COLO4_14309 hypothetical protein AWUE01015408.1 - View
Carica papaya Cpa.g.sc107.52 supercontig_107 - View
Chenopodium quinoa AUR62015985 Protein of unknown function C_Quinoa_Scaffold_3256 + View
Chenopodium quinoa AUR62021193 Protein of unknown function C_Quinoa_Scaffold_1783 + View
Capsella rubella Carub.0008s1239 PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 scaffold_8 - View
Cucumis sativus L. CsaV3_3G049940 Protein shortage in chiasmata 1 chr3 - View
Daucus carota DCAR_018198 hypothetical protein DCARv2_Chr5 - View
Davidia involucrata Dinv28442 GWHABJS00000004 + View
Durio zibethinus Duzib068G1336 The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon NW_019167838.1 + View
Erigeron canadensis ECA232G1470 Conyza_canadensis_scaffold:2 + View
Erythranthe guttata Migut.F00340 scaffold_6 + View
Eutrema salsugineum Thhalv10015364m.g PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 scaffold_2 + View
Fragaria x ananassa FAN06G0670 Fvb7-2 - View
Fragaria x ananassa FAN03G0333 PTHR35764//PTHR35764:SF1 - FAMILY NOT NAMED // SHORTAGE IN CHIASMATA 1 Fvb7-3 + View
Fragaria x ananassa FAN01G1040 PTHR35764//PTHR35764:SF1 - FAMILY NOT NAMED // SHORTAGE IN CHIASMATA 1 Fvb7-4 + View
Fragaria x ananassa FAN03G0790 Fvb7-3 + View
Fragaria x ananassa FAN06G0715 PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 Fvb7-2 - View
Fragaria vesca FvH4_7g29470 Fvb7 - View
Gossypium hirsutum Gohir.A12G257850 A12 + View
Gossypium hirsutum Gohir.D12G259200 D12 + View
Glycine max Glyma.09G139400 PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 Gm09 - View
Gossypium raimondii Gorai.008G277600 Chr08 + View
Hydrangea macrophylla Hma1.2p1_0270F.1_g108020 Hma1.2p1_0270F.1 + View
Lupinus albus Lalb_Chr19g0130841 Lalb_Chr19 + View
Lotus japonicus Lj2g0003134 PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 chr2 - View
Lactuca sativa Lsat_1_v5_gn_9_55980 Lsat_1_v8_lg_9 - View
Magnolia biondii MBI17_g46440_MAGBIO AED:0.44 Chr17 - View
Malus domestica MD01G1200800 shortage in chiasmata 1 Chr01 - View
Malus domestica MD07G1268700 shortage in chiasmata 1 Chr07 - View
Manihot esculenta Manes.06G147100 Chromosome06 - View
Nelumbo nucifera Nn6g33500 chr6 + View
Nicotiana tabacum Nitab4.5_0000716g0010 Unknown Nitab4.5_0000716 + View
Olea europaea Oeu056255.1 scaffold716 - View
Petunia axillaris Peaxi162Scf00444g00841 shortage in chiasmata 1 Peaxi162Scf00444 + View
Punica granatum PGR142G3926 NC_045128.1 + View
Prunus persica Prupe.2G294300 PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 Pp02 - View
Populus trichocarpa Potri.012G141100 Chr12 - View
Phaseolus vulgaris Phvul.004G117000 PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 Chr04 - View
Quercus lobata QL09p014214 9 + View
Rosa chinensis RcHm_v2.0_Chr1g0377251 RcHm_v2.0_Chr1 - View
Rhododendron simsii Rhsim03G0180800 chr03 - View
Striga asiatica SGA_v2.0_scaffold60G21038 scaffold60 - View
Salvia bowleyana SalBow4G1821 GWHASIU00000008 + View
Salvia bowleyana SalBow4G2278 GWHASIU00000008 + View
Salix brachista Sabra12G0106200 GWHAAZH00000012 - View
Simmondsia chinensis Sc13g0008650 GWHAASQ00000013 - View
Sechium edule Sed0022815 LG05 + View
Schrenkiella parvula Sp6g14550 PTHR35764:SF1 - SHORTAGE IN CHIASMATA 1 ch6-6 - View
Solanum pennellii Sopen03g004630 Encodes a protein with similarity to XPF endonucleases. Loss of function mutations have defects in meiosis- specifically a reduction in the number of chiasmata. As a result both pollen and embryo sacs are abnormal and plants have severely reduced fertility. | SHORTAGE IN CHIASMATA 1 (SHOC1) Spenn-ch03 + View
Solanum tuberosum PGSC0003DMG400014341 SHOC1 (SHORTAGE IN CHIASMATA 1) ST4.03ch03 - View
Selenicereus undatus Hund11747 Scaffold_33679 + View
Trochodendron aralioides TAR375G0314 group15 - View
Theobroma cacao Thecc.03G176600 Shortage in chiasmata 1 Chromosome_3 - View
Tarenaya hassleriana THA.LOC104800252 uncharacterized protein LOC104800252 NW_010969135.1 + View
Trifolium pratense TPR.G10740 Tp57577_TGAC_v2_LG2 + View
Tripterygium wilfordii TWI23G0169 NC_052239.1 + View
Vigna mungo VMungo0464G1636 CM024077.1 - View
Vitis vinifera GSVIVG01028977001 chr16 - View