Gene: AT5G52290

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G52290
  • Transcript Identifier AT5G52290.1
  • Gene Type Coding gene
  • Location Chr5 : 21230353-21236554 : negative

Gene Family Information

  • ID HOM05D005579
  • #Genes/#Species 138/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G52290.1
  • symbol SHOC1
  • full_name SHORTAGE IN CHIASMATA 1
  • uniprot F4KG50

Descriptions

  • Description shortage in chiasmata 1
  • Computational description SHORTAGE IN CHIASMATA 1 (SHOC1); Has 68 Blast hits to 59 proteins in 25 species: Archae - 0; Bacteria - 11; Metazoa - 8; Fungi - 4; Plants - 40; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000712
IMP
IBA
Gene Ontologyresolution of meiotic recombination intermediates1 2
GO:0006310
IEA
GOA DatabaseDNA recombination
GO:0051321
IEA
GOA Databasemeiotic cell cycle
GO:0007131
IEA
GOA Databasereciprocal meiotic recombination
GO:0007131
IEA
InterProreciprocal meiotic recombination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding3

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009506
IDA
GOA Databaseplasmodesma
GO:0009506
HDA
Gene Ontologyplasmodesma4
GO:0005634
IEA
GOA Databasenucleus
GO:0005694
ISO
PLAZA Integrative Orthologychromosome Os02g0642600

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR038824 Protein shortage in chiasmata 1-like
Mapman id Description
13.3.5.5.1.4.2 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.SHOC1-PTD heterodimer.endonuclease component SHOC1/ZIP2