Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1475.3 764 100.0
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1414.4 734 99.5
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1300.4 697 96.4
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1275.0 693 95.4
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1261.5 693 94.5
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1255.0 710 92.3
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1206.0 695 88.2
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1198.7 716 89.0
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1195.3 692 88.7
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1186.0 693 86.4
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1178.7 688 87.4
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 688 86.8
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1172.9 704 84.8
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1169.8 694 85.9
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1169.5 693 84.8
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 688 86.3
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1168.7 695 85.3
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1167.9 695 85.2
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 690 85.8
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 666 91.9
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 691 84.9
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 704 83.8
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 690 85.7
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 704 83.7
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 692 85.3
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1159.1 704 83.5
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1157.9 700 84.4
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1156.0 736 81.4
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1154.8 687 86.0
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1151.3 703 83.6
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1151.0 691 83.6
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1149.8 708 82.9
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 691 83.8
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 695 84.0
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 708 82.5
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 695 83.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1147.9 691 84.4
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 688 83.7
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1147.1 708 82.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 689 84.5
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1146.7 708 82.5
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 687 84.3
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 687 84.3
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1146.3 687 84.3
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1143.3 699 83.7
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1142.1 714 82.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1141.7 691 82.1
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1141.3 688 84.0
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1140.6 691 84.2
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 691 84.1
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 697 84.4
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1138.3 699 83.0
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1136.7 700 83.0
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1135.2 691 83.4
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 699 83.1
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 0.0e+00 1130.5 668 86.2
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 695 83.2
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1129.8 668 85.0
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1126.7 688 82.3
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1125.5 691 83.4
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1125.2 699 82.0
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1124.8 688 82.1
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1124.8 700 82.4
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 685 82.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 699 82.5
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 733 79.4
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 0.0e+00 1120.9 760 78.0
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1120.5 691 81.3
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 691 81.3
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1119.4 713 81.1
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 701 80.6
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 701 80.5
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1119.0 701 80.5
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 691 81.3
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 689 82.0
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1118.2 739 78.6
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1117.4 695 82.4
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1117.1 701 80.3
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 691 81.2
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1114.4 701 80.2
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 691 81.8
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 0.0e+00 1112.8 711 79.6
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1112.4 702 80.3
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1112.4 693 81.5
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1108.6 694 80.5
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 704 81.2
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 695 79.1
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1100.5 695 81.6
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 698 79.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1095.1 698 79.7
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1075.8 739 76.9
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 5.2e-312 1074.3 698 77.9
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 1.7e-308 1062.4 667 79.8
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 2.2e-308 1062.0 733 74.9
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.8e-308 1061.6 695 76.5
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 1.8e-307 1058.9 691 77.3
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 1.3e-305 1052.7 711 76.2
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 4.5e-298 1027.7 693 75.5
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 6.3e-292 1007.3 748 69.5
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 2.4e-283 978.8 591 82.7
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 4.0e-278 961.4 623 78.3
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 5.2e-278 961.1 631 78.6
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 7.5e-277 957.2 696 68.4
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.0e-274 949.1 689 68.7
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 2.0e-274 949.1 689 68.7
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 3.4e-269 931.8 695 68.1
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 7.1e-267 924.1 691 67.6
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-264 916.0 584 77.9
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 3.8e-260 901.7 589 78.8
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 8.4e-260 900.6 683 70.7
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 3.5e-258 895.2 566 78.8
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 6.0e-258 894.4 554 81.2
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 9.0e-246 854.0 504 86.1
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.6e-242 843.2 676 67.3
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.9e-230 801.2 480 84.6
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 4.3e-224 781.9 681 58.1
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 2.9e-212 742.7 695 54.8
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 3.3e-200 702.6 423 81.6
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 3.6e-194 682.6 466 78.3
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 7.3e-155 552.0 733 43.8
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 9.9e-152 541.6 328 80.2
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 2.8e-146 523.5 776 38.4
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 7.1e-134 482.3 280 84.6
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 4.6e-125 453.0 273 81.7
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 4.0e-121 439.9 269 81.8
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 2.2e-119 434.1 359 62.7
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 1.4e-110 404.8 740 34.9
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 5.5e-110 402.9 253 79.4
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 6.0e-109 399.4 237 82.3
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 6.0e-109 399.4 233 82.4
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 6.3e-106 389.4 261 78.9
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 2.0e-96 357.8 240 78.3
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.6e-77 295.0 181 77.9
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 2.3e-76 291.2 215 70.2
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.1e-73 282.3 193 79.8
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.4e-68 265.4 148 82.4
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.3e-66 258.8 195 69.2
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-59 234.6 155 67.7
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 2.6e-59 234.6 192 69.8
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 7.0e-57 226.5 167 70.1
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.3e-54 217.6 122 93.4
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 3.3e-54 217.6 156 71.8
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 4.7e-53 213.8 180 67.2
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 1.2e-51 209.1 197 60.9
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.5e-46 192.2 114 85.1
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 1.9e-46 191.8 488 28.3
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 5.8e-43 180.3 102 83.3
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.0e-39 169.5 111 82.9
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 8.9e-36 156.4 111 73.0
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 8.9e-28 129.8 100 67.0
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 5.8e-27 127.1 151 51.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 1.1e-25 122.9 100 64.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 1.1e-25 122.9 100 64.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 2.1e-24 118.6 80 75.0
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 8.7e-23 113.2 72 77.8
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.4e-20 105.9 63 76.2
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.8e-20 105.5 117 53.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 9.0e-20 103.2 74 71.6
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 4.4e-19 100.9 77 64.9
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 5.8e-19 100.5 57 82.5
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 1.7e-18 99.0 69 66.7
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 1.7e-18 99.0 59 78.0
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.9e-17 95.5 93 59.1
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 1.3e-15 89.4 65 72.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 2.9e-10 71.6 62 64.5
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 4.9e-10 70.9 78 46.2
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 3.5e-08 64.7 40 80.0
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.5e-06 59.3 57 56.1


User provided reference genes

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