Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g101010.4 Solanum lycopersicum HOM05D005824 ORTHO05D007029 2.3e-196 688.7 352 100.0
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 1.4e-188 662.9 343 98.3
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 7.9e-181 637.1 346 95.7
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 1.5e-150 536.6 348 82.2
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.4e-145 519.2 347 78.7
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.3e-142 508.4 347 76.1
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 2.1e-128 463.0 345 71.9
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 9.3e-97 357.8 350 56.0
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.6e-93 347.1 348 57.2
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 2.1e-88 330.1 345 53.3
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 2.7e-88 329.7 347 55.0
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 2.7e-88 329.7 352 53.7
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 2.3e-87 326.6 252 64.3
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 5.1e-87 325.5 294 62.9
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.1e-86 324.3 251 64.1
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 2.1e-85 320.1 316 55.4
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 8.2e-85 318.2 256 64.5
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 1.2e-83 314.3 260 63.1
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 2.0e-83 313.5 357 51.5
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 2.0e-83 313.5 349 51.9
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 5.0e-82 308.9 260 62.7
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 6.5e-82 308.5 293 56.7
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 1.1e-81 307.8 317 53.0
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 1.2e-80 304.3 294 57.1
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 2.1e-80 303.5 248 63.7
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 5.1e-79 298.9 346 51.4
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 6.7e-79 298.5 274 58.8
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 2.5e-78 296.6 375 47.7
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 3.3e-78 296.2 296 55.7
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 3.3e-78 296.2 288 56.6
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 5.7e-78 295.4 306 54.6
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 2.4e-76 290.0 289 53.6
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 4.1e-76 289.3 357 49.3
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 4.1e-76 289.3 349 47.3
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 4.1e-76 289.3 347 49.9
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 4.1e-76 289.3 252 58.3
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 5.3e-76 288.9 296 53.0
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 6.9e-76 288.5 323 52.0
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 6.9e-76 288.5 355 48.7
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 2.6e-75 286.6 249 60.2
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 4.5e-75 285.8 272 54.8
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.0e-74 284.6 267 56.9
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 2.2e-74 283.5 349 49.6
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 3.8e-74 282.7 348 47.7
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 1.9e-73 280.4 321 49.2
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 3.0e-71 273.1 231 61.0
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 6.7e-71 271.9 264 56.4
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.1e-70 271.2 346 44.8
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 2.0e-70 270.4 351 47.0
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 5.7e-70 268.9 254 55.9
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 9.7e-70 268.1 225 59.6
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 2.4e-68 263.5 351 44.4
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 3.1e-68 263.1 348 45.4
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 4.1e-68 262.7 257 53.7
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 9.1e-68 261.5 247 57.1
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 1.2e-67 261.2 249 57.0
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 1.2e-67 261.2 314 49.7
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 1.5e-67 260.8 347 42.9
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 1.7e-66 257.3 231 61.9
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 1.7e-66 257.3 346 47.4
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 3.2e-65 253.1 345 46.7
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 9.4e-65 251.5 247 53.8
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 9.4e-65 251.5 235 57.4
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 6.1e-64 248.8 341 46.3
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 7.9e-64 248.4 231 56.7
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.4e-63 247.7 292 45.9
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.1e-62 244.6 248 55.6
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 1.5e-62 244.2 338 43.8
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 3.3e-62 243.0 231 55.8
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 5.7e-62 242.3 251 53.8
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 7.4e-62 241.9 250 51.6
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 7.4e-62 241.9 347 45.8
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 1.3e-61 241.1 358 42.5
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 1.3e-61 241.1 356 44.4
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 4.8e-61 239.2 252 52.0
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 4.8e-61 239.2 356 44.4
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 1.4e-60 237.7 238 52.1
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 4.1e-60 236.1 214 59.3
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.1e-60 236.1 252 50.8
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 7.0e-60 235.3 243 49.4
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 7.0e-60 235.3 231 55.0
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.6e-59 234.2 234 52.1
SGA_v2.0_scaffold438G51629 Striga asiatica HOM05D005824 ORTHO05D007029 4.5e-59 232.6 200 59.5
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 7.7e-59 231.9 247 54.7
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 1.0e-58 231.5 356 42.1
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 1.7e-58 230.7 358 42.2
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 5.0e-58 229.2 310 46.8
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 5.0e-58 229.2 310 46.8
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 1.5e-57 227.6 364 41.2
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 4.2e-57 226.1 360 41.4
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 7.2e-57 225.3 268 49.6
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 1.6e-56 224.2 200 59.5
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.0e-55 221.5 239 54.4
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 1.8e-55 220.7 379 40.6
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 3.3e-54 216.5 282 45.7
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 7.5e-54 215.3 231 51.1
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 2.9e-50 203.4 231 49.4
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 3.6e-48 196.4 226 49.6
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 1.8e-47 194.1 242 46.7
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 4.0e-47 193.0 242 46.3
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 6.8e-47 192.2 267 42.7
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.7e-45 187.6 308 42.2
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 6.3e-45 185.7 261 43.3
Oeu060660.1 Olea europaea HOM05D005824 ORTHO05D007029 1.6e-43 181.0 126 70.6
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 5.0e-42 176.0 227 46.3
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 1.5e-38 164.5 353 35.7
Dinv30929 Davidia involucrata HOM05D005824 ORTHO05D007029 1.8e-36 157.5 133 65.4
HPP92_021933 Vanilla planifolia HOM05D005824 ORTHO05D007029 7.7e-35 152.1 179 46.4
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 8.6e-34 148.7 283 39.2
Nitab4.5_0000185g0350 Nicotiana tabacum HOM05D005824 ORTHO05D007029 7.3e-33 145.6 103 70.9
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.7e-29 134.4 178 42.1
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 1.7e-29 134.4 257 36.6
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 2.3e-26 124.0 185 41.6
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 3.1e-23 113.6 238 31.9
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 8.9e-23 112.1 110 50.9
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 3.4e-22 110.2 122 45.1
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 5.8e-22 109.4 86 59.3
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 8.3e-21 105.5 253 34.0
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 8.3e-21 105.5 180 33.3
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 1.4e-20 104.8 86 58.1
Zm00001eb056090 Zea mays HOM05D000739 ORTHO05D007029 4.0e-15 86.7 127 40.2
Zm00001eb289330 Zea mays HOM05D005824 ORTHO05D007029 3.4e-14 83.6 100 45.0
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 1.3e-10 71.6 181 32.6
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 8.6e-10 68.9 181 32.0
QL03p009284 Quercus lobata HOM05D005824 ORTHO05D007029 2.3e-07 60.8 54 55.6


User provided reference genes

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