Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g096900.3 Solanum lycopersicum HOM05D005108 ORTHO05D006171 0.0e+00 1842.8 954 100.0
Sopen01g040610 Solanum pennellii HOM05D005108 ORTHO05D006171 0.0e+00 1829.3 954 99.2
CAN.G134.52 Capsicum annuum HOM05D005108 ORTHO05D006171 0.0e+00 1713.7 955 93.5
Nitab4.5_0005056g0040 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1669.4 969 90.8
Nitab4.5_0001611g0100 Nicotiana tabacum HOM05D005108 ORTHO05D006171 0.0e+00 1649.8 914 93.7
Peaxi162Scf00647g00324 Petunia axillaris HOM05D005108 ORTHO05D006171 0.0e+00 1588.5 966 87.5
Dinv24598 Davidia involucrata HOM05D005108 ORTHO05D006171 0.0e+00 1459.5 935 80.9
Migut.B01161 Erythranthe guttata HOM05D005108 ORTHO05D006171 0.0e+00 1449.5 954 79.5
Cc02_g32000 Coffea canephora HOM05D005108 ORTHO05D006171 0.0e+00 1429.8 943 80.1
SGA_v2.0_scaffold244G44358 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1424.8 929 80.0
CSS0042253 Camellia sinensis var. sinensis HOM05D005108 ORTHO05D006171 0.0e+00 1423.7 960 77.8
Prupe.2G060900 Prunus persica HOM05D005108 ORTHO05D006171 0.0e+00 1418.7 943 78.0
MSTRG.20478 Avicennia marina HOM05D005108 ORTHO05D006171 0.0e+00 1411.7 937 79.1
EL10Ac4g08769 Beta vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1405.6 954 77.3
Cfa014950 Carpinus fangiana HOM05D005108 ORTHO05D006171 0.0e+00 1402.1 941 77.3
Sed0020738 Sechium edule HOM05D005108 ORTHO05D006171 0.0e+00 1401.3 928 77.3
MD07G1054300 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1401.0 936 77.7
AUR62034097 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1400.6 949 76.8
MD02G1265100 Malus domestica HOM05D005108 ORTHO05D006171 0.0e+00 1398.6 944 77.9
Thecc.10G129800 Theobroma cacao HOM05D005108 ORTHO05D006171 0.0e+00 1396.3 901 80.0
AUR62014305 Chenopodium quinoa HOM05D005108 ORTHO05D006171 0.0e+00 1395.9 949 76.5
CANSAT56G0991 Cannabis sativa HOM05D005108 ORTHO05D006171 0.0e+00 1395.2 951 75.6
MELO3C011386.2 Cucumis melo HOM05D005108 ORTHO05D006171 0.0e+00 1395.2 930 77.5
CsaV3_6G035790 Cucumis sativus L. HOM05D005108 ORTHO05D006171 0.0e+00 1392.1 930 77.5
Gohir.D04G017700 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1390.2 897 79.6
Ca_14181_v3 Cicer arietinum L. HOM05D005108 ORTHO05D006171 0.0e+00 1389.0 940 76.2
RcHm_v2.0_Chr1g0331271 Rosa chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1387.1 945 76.4
Potri.010G247000 Populus trichocarpa HOM05D005108 ORTHO05D006171 0.0e+00 1386.3 953 76.3
FvH4_7g05000 Fragaria vesca HOM05D005108 ORTHO05D006171 0.0e+00 1385.9 944 76.6
TAR633G2703 Trochodendron aralioides HOM05D005108 ORTHO05D006171 0.0e+00 1384.8 944 76.9
Gohir.A05G398300 Gossypium hirsutum HOM05D005108 ORTHO05D006171 0.0e+00 1382.5 897 79.0
Duzib106G1854 Durio zibethinus HOM05D005108 ORTHO05D006171 0.0e+00 1380.9 918 77.6
vmacro13787 Vaccinium macrocarpon HOM05D005108 ORTHO05D006171 0.0e+00 1379.0 1038 72.0
Medtr1g031690 Medicago truncatula HOM05D005108 ORTHO05D006171 0.0e+00 1378.6 942 74.9
Eucgr.J00313 Eucalyptus grandis HOM05D005108 ORTHO05D006171 0.0e+00 1375.1 894 79.2
Glyma.09G120200 Glycine max HOM05D005108 ORTHO05D006171 0.0e+00 1374.8 905 78.9
Lj2g0000078 Lotus japonicus HOM05D005108 ORTHO05D006171 0.0e+00 1373.2 944 76.6
unitig_747.g21367 Utricularia gibba HOM05D005108 ORTHO05D006171 0.0e+00 1373.2 842 82.4
SalBow8G0010 Salvia bowleyana HOM05D005108 ORTHO05D006171 0.0e+00 1372.1 975 74.9
Actinidia19615 Actinidia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1370.5 943 77.4
FAN06G2034 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1369.4 963 74.8
Lalb_Chr10g0096011 Lupinus albus HOM05D005108 ORTHO05D006171 0.0e+00 1369.4 949 75.2
Phvul.003G022300 Phaseolus vulgaris HOM05D005108 ORTHO05D006171 0.0e+00 1367.4 943 76.1
HanXRQChr14g0446691 Helianthus annuus HOM05D005108 ORTHO05D006171 0.0e+00 1366.3 938 76.1
Nn2g14646 Nelumbo nucifera HOM05D005108 ORTHO05D006171 0.0e+00 1366.3 931 76.6
COL.COLO4_28907 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1362.4 964 74.9
CiPaw.01G118100 Carya illinoinensis HOM05D005108 ORTHO05D006171 0.0e+00 1361.3 832 82.1
TPR.G36949 Trifolium pratense HOM05D005108 ORTHO05D006171 0.0e+00 1360.9 944 74.9
Psat6g044120 Pisum sativum HOM05D005108 ORTHO05D006171 0.0e+00 1358.6 939 74.8
DCAR_006625 Daucus carota HOM05D005108 ORTHO05D006171 0.0e+00 1357.4 927 77.9
Lsat_1_v5_gn_2_64500 Lactuca sativa HOM05D005108 ORTHO05D006171 0.0e+00 1355.1 955 73.9
Gorai.012G020500 Gossypium raimondii HOM05D005108 ORTHO05D006171 0.0e+00 1353.6 919 76.7
Aqoxy6G00412 Aquilegia oxysepala HOM05D005108 ORTHO05D006171 0.0e+00 1351.3 925 76.1
Oeu013050.3 Olea europaea HOM05D005108 ORTHO05D006171 0.0e+00 1346.6 1055 70.1
TWI15G0284 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 0.0e+00 1342.8 902 77.5
FAN03G1083 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1337.8 954 73.6
PSO541G5178 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1336.6 946 73.6
PGR044G2262 Punica granatum HOM05D005108 ORTHO05D006171 0.0e+00 1335.9 888 78.0
PSO675G3383 Papaver somniferum HOM05D005108 ORTHO05D006171 0.0e+00 1332.0 948 73.2
arahy.Tifrunner.gnm1.ann1.TCCJ6Y Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1325.5 935 74.5
ECA238G1701 Erigeron canadensis HOM05D005108 ORTHO05D006171 0.0e+00 1324.3 930 73.8
FAN10G0981 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1317.8 954 72.9
THA.LOC104826959 Tarenaya hassleriana HOM05D005108 ORTHO05D006171 0.0e+00 1317.4 959 72.6
AT3G10690 Arabidopsis thaliana HOM05D005108 ORTHO05D006171 0.0e+00 1313.1 933 73.5
Carub.0003s0992 Capsella rubella HOM05D005108 ORTHO05D006171 0.0e+00 1310.8 947 72.4
CARHR085270 Cardamine hirsuta HOM05D005108 ORTHO05D006171 0.0e+00 1309.7 932 73.1
arahy.Tifrunner.gnm1.ann1.3FCU7M Arachis hypogaea HOM05D005108 ORTHO05D006171 0.0e+00 1306.2 1069 66.8
ATR0068G093 Amborella trichopoda HOM05D005108 ORTHO05D006171 0.0e+00 1305.4 958 70.5
COL.COLO4_28912 Corchorus olitorius HOM05D005108 ORTHO05D006171 0.0e+00 1305.0 976 71.5
AL3G22160 Arabidopsis lyrata HOM05D005108 ORTHO05D006171 0.0e+00 1302.7 934 72.5
Aa31LG3G3550 Aethionema arabicum HOM05D005108 ORTHO05D006171 0.0e+00 1300.8 972 70.5
Sabra10G0192400 Salix brachista HOM05D005108 ORTHO05D006171 0.0e+00 1300.4 856 77.7
Sp3g09010 Schrenkiella parvula HOM05D005108 ORTHO05D006171 0.0e+00 1298.5 912 73.6
Thhalv10020005m.g Eutrema salsugineum HOM05D005108 ORTHO05D006171 0.0e+00 1297.7 868 75.8
SGA_v2.0_scaffold164G38128 Striga asiatica HOM05D005108 ORTHO05D006171 0.0e+00 1294.6 883 76.4
BolC3t16703H Brassica oleracea HOM05D005108 ORTHO05D006171 0.0e+00 1289.6 854 77.2
A03p36700 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1288.9 852 77.3
C03p44330 Brassica napus HOM05D005108 ORTHO05D006171 0.0e+00 1286.9 853 77.1
BraA03t12833Z Brassica rapa HOM05D005108 ORTHO05D006171 0.0e+00 1271.9 880 74.8
Zm00001eb212160 Zea mays HOM05D005108 ORTHO05D006171 0.0e+00 1243.4 841 74.4
FAN01G1063 Fragaria x ananassa HOM05D005108 ORTHO05D006171 0.0e+00 1226.5 1004 66.7
Lj7A491G32 Lonicera japonica HOM05D005108 ORTHO05D006171 0.0e+00 1214.9 816 78.3
Sc09g0004910 Simmondsia chinensis HOM05D005108 ORTHO05D006171 0.0e+00 1212.2 798 77.9
SEGI_06230 Sequoiadendron giganteum HOM05D005108 ORTHO05D006171 0.0e+00 1195.3 947 64.9
GSVIVG01027314001 Vitis vinifera HOM05D005108 ORTHO05D006171 0.0e+00 1156.0 721 80.9
Atru.chr12.1231 Acer truncatum HOM05D005108 ORTHO05D006171 0.0e+00 1155.2 732 80.5
Manes.10G065200 Manihot esculenta HOM05D005108 ORTHO05D006171 0.0e+00 1142.5 717 80.6
Mapoly0010s0185 Marchantia polymorpha HOM05D005108 ORTHO05D006171 4.8e-305 1051.2 903 59.9
Pp3c8_18800 Physcomitrium patens HOM05D005108 ORTHO05D006171 8.2e-305 1050.4 863 62.3
SMO200G0101 Selaginella moellendorffii HOM05D005108 ORTHO05D006171 2.8e-289 998.8 855 58.6
CBR_g16891 Chara braunii HOM05D005108 ORTHO05D006171 5.0e-262 908.3 865 53.8
Ciclev10014605m.g Citrus clementina HOM05D005108 ORTHO05D006171 1.4e-251 873.6 649 70.7
Hma1.2p1_0892F.1_g233240 Hydrangea macrophylla HOM05D005108 ORTHO05D006171 1.3e-249 867.1 599 76.3
SHI21238 Sapria himalayana HOM05D005108 ORTHO05D006171 4.1e-248 862.1 584 74.7
Glyma.07G166000 Glycine max HOM05D005108 ORTHO05D006171 2.7e-223 779.6 551 74.8
QL05p027656 Quercus lobata HOM05D005108 ORTHO05D006171 2.1e-220 770.0 1081 44.8
PSO675G3264 Papaver somniferum HOM05D005108 ORTHO05D006171 3.9e-214 749.2 496 75.4
CDE02G2028 Ceratophyllum demersum HOM05D005108 ORTHO05D006171 7.8e-207 724.9 498 74.1
Haze_11639 Corylus avellana HOM05D005108 ORTHO05D006171 3.3e-205 719.5 553 70.2
MCO10G205 Micromonas commoda HOM05D005108 ORTHO05D006171 3.8e-201 706.1 861 46.2
AagrBONN_evm.TU.Sc2ySwM_344.4532 Anthoceros agrestis HOM05D005108 ORTHO05D006171 4.9e-201 705.7 570 61.8
PRCOL_00001980 Prasinoderma coloniale HOM05D005108 ORTHO05D006171 1.0e-190 671.4 853 43.7
Rhsim07G0072200 Rhododendron simsii HOM05D005108 ORTHO05D006171 1.2e-186 657.9 475 73.7
ClCG08G010770 Citrullus lanatus HOM05D005108 ORTHO05D006171 1.9e-181 640.6 457 74.8
MBI19_g19123_MAGBIO Magnolia biondii HOM05D005108 ORTHO05D006171 5.9e-178 629.0 429 75.3
ClCG08G010760 Citrullus lanatus HOM05D005108 ORTHO05D006171 1.2e-175 621.3 647 55.0
HPP92_019018 Vanilla planifolia HOM05D005108 ORTHO05D006171 9.1e-163 578.6 339 82.9
Os03g0812000 Oryza sativa ssp. japonica HOM05D005108 ORTHO05D006171 1.5e-157 561.2 423 68.1
Cre04.g221650 Chlamydomonas reinhardtii HOM05D005108 ORTHO05D006171 4.0e-134 483.4 710 41.7
Ciclev10017460m.g Citrus clementina HOM05D005108 ORTHO05D006171 5.8e-117 426.4 289 76.8
SalBow2G2216 Salvia bowleyana HOM05D005108 ORTHO05D006171 1.9e-112 411.4 339 66.4
Haze_11640 Corylus avellana HOM05D005108 ORTHO05D006171 3.0e-105 387.5 311 70.1
Haze_27415 Corylus avellana HOM05D005108 ORTHO05D006171 2.1e-95 354.8 262 63.0
Cpa.g.sc54.44 Carica papaya HOM05D005108 ORTHO05D006171 4.8e-87 327.0 308 60.1
Haze_27335 Corylus avellana HOM05D005108 ORTHO05D006171 9.3e-83 312.8 319 50.8
Cc10_g09260 Coffea canephora HOM05D005108 ORTHO05D006171 4.6e-74 283.9 218 71.1
RcHm_v2.0_Chr1g0331301 Rosa chinensis HOM05D005108 ORTHO05D006171 5.1e-73 280.4 169 80.5
PSO541G5684 Papaver somniferum HOM05D005108 ORTHO05D006171 2.6e-69 268.1 209 65.6
Cpa.g.sc54.41 Carica papaya HOM05D005108 ORTHO05D006171 3.4e-69 267.7 187 74.3
Cc00_g10710 Coffea canephora HOM05D005108 ORTHO05D006171 8.2e-63 246.5 155 80.0
RcHm_v2.0_Chr1g0331311 Rosa chinensis HOM05D005108 ORTHO05D006171 8.2e-63 246.5 198 70.2
BolC2t08699H Brassica oleracea HOM05D005108 ORTHO05D006171 5.3e-54 217.2 260 48.8
GSVIVG01027315001 Vitis vinifera HOM05D005108 ORTHO05D006171 1.7e-52 212.2 109 90.8
TWI15G0159 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 4.2e-51 207.6 120 84.2
BcaC03g15072 Brassica carinata HOM05D001402 ORTHO05D001302 3.6e-50 204.5 122 81.1
Cpa.g.sc54.38 Carica papaya HOM05D005108 ORTHO05D006171 5.5e-43 180.6 96 88.5
SHI21237 Sapria himalayana HOM05D005108 ORTHO05D006171 4.7e-42 177.6 120 70.8
FAN11G3169 Fragaria x ananassa HOM05D005108 ORTHO05D006171 6.5e-36 157.1 110 71.8
FvH4_3g19380 Fragaria vesca HOM05D005108 ORTHO05D006171 1.5e-35 156.0 110 71.8
FAN09G3239 Fragaria x ananassa HOM05D005108 ORTHO05D006171 5.4e-30 137.5 110 63.6
Lj7C491T1 Lonicera japonica HOM05D005108 ORTHO05D006171 5.5e-27 127.5 120 61.7
Cc00_g10680 Coffea canephora HOM05D005108 ORTHO05D006171 2.1e-26 125.6 76 81.6
FAN28G0578 Fragaria x ananassa HOM05D005108 ORTHO05D006171 1.2e-24 119.8 141 51.1
Prupe.7G020300 Prunus persica HOM05D007623 ORTHO05D009641 7.5e-24 117.1 176 44.9
Cc10_g09250 Coffea canephora HOM05D005108 ORTHO05D006171 5.9e-21 107.5 76 69.7
HPP92_019017 Vanilla planifolia HOM05D005108 ORTHO05D006171 3.8e-20 104.8 101 58.4
Cpa.g.sc54.40 Carica papaya HOM05D005108 ORTHO05D006171 1.2e-18 99.8 92 57.6
arahy.Tifrunner.gnm1.ann1.ES5MTE Arachis hypogaea HOM05D002263 ORTHO05D003537 2.8e-18 98.6 387 24.8
Atru.chr12.1230 Acer truncatum HOM05D005108 ORTHO05D006171 1.0e-17 96.7 80 61.2
Cpa.g.sc1221.1 Carica papaya HOM05D005108 ORTHO05D006171 1.0e-17 96.7 143 47.6
Lalb_Chr19g0140281 Lupinus albus HOM05D002263 ORTHO05D003537 1.0e-17 96.7 505 24.2
Psat0s825g0040 Pisum sativum HOM05D002263 ORTHO05D003537 1.2e-16 93.2 453 23.8
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 2.0e-16 92.4 55 81.8
arahy.Tifrunner.gnm1.ann1.YBM0H9 Arachis hypogaea HOM05D005108 ORTHO05D006171 4.4e-16 91.3 119 42.9
TWI15G0962 Tripterygium wilfordii HOM05D005108 ORTHO05D006171 5.7e-16 90.9 93 55.9
Medtr3g031040 Medicago truncatula HOM05D002263 ORTHO05D003537 1.3e-15 89.7 451 22.8
arahy.Tifrunner.gnm1.ann1.CKFG51 Arachis hypogaea HOM05D002263 ORTHO05D003537 2.9e-15 88.6 448 23.4
Cpa.g.c37237 Carica papaya HOM05D005108 ORTHO05D006171 2.4e-14 85.5 43 90.7
Cc00_g06520 Coffea canephora HOM05D005108 ORTHO05D006171 2.0e-13 82.4 132 45.5
Cre01.g009250 Chlamydomonas reinhardtii HOM05D002263 ORTHO05D003537 2.7e-13 82.0 351 25.6
CBR_g55332 Chara braunii HOM05D002263 ORTHO05D003537 4.6e-13 81.3 401 23.9
Medtr3g085840 Medicago truncatula HOM05D002263 ORTHO05D003537 1.3e-12 79.7 389 23.4
AUR62009398 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.1e-11 76.6 353 23.8
AUR62023080 Chenopodium quinoa HOM05D002263 ORTHO05D003537 1.1e-11 76.6 353 23.5
Lj1g0019754 Lotus japonicus HOM05D002263 ORTHO05D003537 1.9e-11 75.9 222 25.7
AT3G23890 Arabidopsis thaliana HOM05D002263 ORTHO05D003537 2.5e-11 75.5 177 31.6
HanXRQChr01g0008811 Helianthus annuus HOM05D005108 ORTHO05D006171 5.6e-11 74.3 52 67.3
Lj4g0010623 Lotus japonicus HOM05D002263 ORTHO05D003537 1.0e-09 70.1 218 26.1
PRCOL_00004802 Prasinoderma coloniale HOM05D002263 ORTHO05D003537 1.0e-09 70.1 198 27.3
Lj4g0004129 Lotus japonicus HOM05D002263 ORTHO05D003537 4.0e-09 68.2 222 24.3
SMO330G0020 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 6.8e-09 67.4 181 28.2
SMO147G0130 Selaginella moellendorffii HOM05D002263 ORTHO05D003537 8.9e-09 67.0 179 28.5
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 1.2e-08 66.6 51 66.7
EL10Ac2g04344 Beta vulgaris HOM05D002263 ORTHO05D003537 1.5e-08 66.2 500 21.8
RhsimUnG0044300 Rhododendron simsii HOM05D002263 ORTHO05D003537 1.5e-08 66.2 179 30.7
HPP92_018990 Vanilla planifolia HOM05D005108 ORTHO05D006171 1.5e-08 66.2 136 37.5
Manes.10G140100 Manihot esculenta HOM05D002263 ORTHO05D003537 9.8e-08 63.5 493 22.1
Mapoly0050s0134 Marchantia polymorpha HOM05D002263 ORTHO05D003537 1.3e-07 63.2 358 22.1
TPR.G17543 Trifolium pratense HOM05D002263 ORTHO05D003537 4.9e-07 61.2 179 27.4
C03p42230 Brassica napus HOM05D005108 ORTHO05D006171 5.4e-06 57.8 85 42.4


User provided reference genes

Program Settings