Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g079210.3 Solanum lycopersicum HOM05D004146 ORTHO05D004843 1.4e-251 872.5 452 100.0
Sopen01g030990 Solanum pennellii HOM05D004146 ORTHO05D004843 2.0e-229 798.9 422 98.8
PGSC0003DMG400009054 Solanum tuberosum HOM05D004146 ORTHO05D004843 8.8e-225 783.5 422 96.9
Nitab4.5_0000222g0120 Nicotiana tabacum HOM05D004146 ORTHO05D004843 3.6e-218 761.5 452 88.7
CAN.G293.4 Capsicum annuum HOM05D004146 ORTHO05D004843 6.3e-215 750.7 423 93.1
Peaxi162Scf00770g00128 Petunia axillaris HOM05D004146 ORTHO05D004843 1.2e-200 703.4 426 87.8
Nitab4.5_0010752g0020 Nicotiana tabacum HOM05D004146 ORTHO05D004843 6.8e-185 651.0 407 86.0
Cc01_g21680 Coffea canephora HOM05D004146 ORTHO05D004843 8.9e-185 650.6 435 77.9
COL.COLO4_23187 Corchorus olitorius HOM05D004146 ORTHO05D004843 1.2e-184 650.2 427 81.0
Ciclev10020117m.g Citrus clementina HOM05D004146 ORTHO05D004843 4.1e-182 641.7 427 78.5
Dinv12116 Davidia involucrata HOM05D004146 ORTHO05D004843 1.6e-181 639.8 426 78.4
Gohir.D08G141300 Gossypium hirsutum HOM05D004146 ORTHO05D004843 4.3e-179 631.7 427 78.9
MSTRG.21711 Avicennia marina HOM05D004146 ORTHO05D004843 9.5e-179 630.6 425 77.4
Gorai.004G145300 Gossypium raimondii HOM05D004146 ORTHO05D004843 1.2e-178 630.2 430 78.6
Thecc.01G319000 Theobroma cacao HOM05D004146 ORTHO05D004843 1.2e-178 630.2 427 78.9
Gohir.A08G120400 Gossypium hirsutum HOM05D004146 ORTHO05D004843 2.8e-178 629.0 429 78.3
Actinidia17925 Actinidia chinensis HOM05D004146 ORTHO05D004843 8.1e-178 627.5 426 78.6
Rhsim13G0002300 Rhododendron simsii HOM05D004146 ORTHO05D004843 3.1e-177 625.5 426 77.0
Cpa.g.sc18.100 Carica papaya HOM05D004146 ORTHO05D004843 4.4e-176 621.7 427 77.8
CSS0038119 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.8e-176 621.3 426 76.5
QL12p018794 Quercus lobata HOM05D004146 ORTHO05D004843 9.9e-176 620.5 426 76.8
Atru.chr5.940 Acer truncatum HOM05D004146 ORTHO05D004843 2.9e-175 619.0 427 77.5
Migut.D00054 Erythranthe guttata HOM05D004146 ORTHO05D004843 1.9e-174 616.3 425 76.0
GSVIVG01028167001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.9e-174 616.3 426 75.4
Dinv39081 Davidia involucrata HOM05D004146 ORTHO05D004843 3.2e-174 615.5 426 76.8
SGA_v2.0_scaffold376G50305 Striga asiatica HOM05D004146 ORTHO05D004843 3.2e-174 615.5 424 75.9
Manes.05G012300 Manihot esculenta HOM05D004146 ORTHO05D004843 4.1e-174 615.1 426 77.2
Potri.014G117400 Populus trichocarpa HOM05D004146 ORTHO05D004843 4.1e-174 615.1 427 77.0
CSS0021664 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 5.4e-174 614.8 426 75.8
vmacro02380 Vaccinium macrocarpon HOM05D004146 ORTHO05D004843 2.7e-173 612.5 432 75.7
CiPaw.08G086700 Carya illinoinensis HOM05D004146 ORTHO05D004843 1.7e-172 609.8 426 75.4
VMungo1383G2606 Vigna mungo HOM05D004146 ORTHO05D004843 1.7e-172 609.8 422 77.5
Nn2g12083 Nelumbo nucifera HOM05D004146 ORTHO05D004843 2.3e-172 609.4 425 75.8
Phvul.001G214900 Phaseolus vulgaris HOM05D004146 ORTHO05D004843 1.1e-171 607.1 424 77.1
Sabra14G0087100 Salix brachista HOM05D004146 ORTHO05D004843 1.5e-171 606.7 435 75.4
CSS0047407 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 3.3e-171 605.5 426 74.6
AUR62024599 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.8e-170 602.4 422 74.9
TWI14G0575 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 8.1e-170 600.9 427 76.1
Eucgr.K03560 Eucalyptus grandis HOM05D004146 ORTHO05D004843 1.4e-169 600.1 425 74.4
EL10As5g23605 Beta vulgaris HOM05D004146 ORTHO05D004843 1.8e-169 599.7 422 75.4
ECA236G0429 Erigeron canadensis HOM05D004146 ORTHO05D004843 2.6e-168 595.9 430 75.6
CANSAT80G2876 Cannabis sativa HOM05D004146 ORTHO05D004843 7.6e-168 594.3 428 73.1
TAR633G1592 Trochodendron aralioides HOM05D004146 ORTHO05D004843 1.7e-167 593.2 426 73.7
HanXRQChr06g0168071 Helianthus annuus HOM05D004146 ORTHO05D004843 2.2e-167 592.8 428 75.0
Duzib211G0108 Durio zibethinus HOM05D004146 ORTHO05D004843 3.0e-164 582.4 393 78.4
Glyma.19G218500 Glycine max HOM05D004146 ORTHO05D004843 1.5e-163 580.1 422 73.9
Glyma.03G221500 Glycine max HOM05D004146 ORTHO05D004843 9.6e-163 577.4 429 73.7
Duzib211G0650 Durio zibethinus HOM05D004146 ORTHO05D004843 1.6e-162 576.6 427 74.5
TWI23G0480 Tripterygium wilfordii HOM05D004146 ORTHO05D004843 2.8e-162 575.9 427 72.6
Lj1C336G0 Lonicera japonica HOM05D004146 ORTHO05D004843 3.6e-162 575.5 425 73.6
Sc24g0004180 Simmondsia chinensis HOM05D004146 ORTHO05D004843 4.8e-162 575.1 426 71.1
PGR083G0515 Punica granatum HOM05D004146 ORTHO05D004843 6.2e-162 574.7 424 72.4
arahy.Tifrunner.gnm1.ann1.F4ZKGQ Arachis hypogaea HOM05D004146 ORTHO05D004843 4.0e-161 572.0 422 73.7
arahy.Tifrunner.gnm1.ann1.TWIF5Z Arachis hypogaea HOM05D004146 ORTHO05D004843 4.0e-161 572.0 422 73.7
TAR362G0580 Trochodendron aralioides HOM05D004146 ORTHO05D004843 5.3e-161 571.6 410 73.9
Lj5g0012537 Lotus japonicus HOM05D004146 ORTHO05D004843 2.0e-160 569.7 423 71.4
CsaV3_7G030200 Cucumis sativus L. HOM05D004146 ORTHO05D004843 4.5e-160 568.5 429 71.1
MD01G1004200 Malus domestica HOM05D004146 ORTHO05D004843 4.5e-160 568.5 425 72.7
arahy.Tifrunner.gnm1.ann1.E9GQEB Arachis hypogaea HOM05D004146 ORTHO05D004843 7.6e-160 567.8 425 72.0
Psat3g019080 Pisum sativum HOM05D004146 ORTHO05D004843 7.6e-160 567.8 424 71.2
arahy.Tifrunner.gnm1.ann1.BI9FA3 Arachis hypogaea HOM05D004146 ORTHO05D004843 2.2e-159 566.2 425 72.0
Lalb_Chr04g0260041 Lupinus albus HOM05D004146 ORTHO05D004843 8.4e-159 564.3 423 72.6
MELO3C015904.2 Cucumis melo HOM05D004146 ORTHO05D004843 1.1e-158 563.9 429 71.1
Prupe.3G006800 Prunus persica HOM05D004146 ORTHO05D004843 1.1e-158 563.9 393 75.1
Aqoxy2G00845 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.4e-158 563.5 426 71.6
Medtr7g109870 Medicago truncatula HOM05D004146 ORTHO05D004843 1.4e-158 563.5 427 71.0
Sed0005540 Sechium edule HOM05D004146 ORTHO05D004843 1.9e-158 563.1 429 70.6
Lalb_Chr18g0046551 Lupinus albus HOM05D004146 ORTHO05D004843 7.1e-158 561.2 422 72.0
TPR.G4037 Trifolium pratense HOM05D004146 ORTHO05D004843 1.6e-157 560.1 424 70.5
Ca_09227_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 3.5e-157 558.9 441 69.2
Lj1g0001654 Lotus japonicus HOM05D004146 ORTHO05D004843 6.0e-157 558.1 429 70.6
RcHm_v2.0_Chr3g0486991 Rosa chinensis HOM05D004146 ORTHO05D004843 1.3e-156 557.0 424 71.2
FvH4_1g26770 Fragaria vesca HOM05D004146 ORTHO05D004843 3.0e-156 555.8 426 71.4
PSO210G5259 Papaver somniferum HOM05D004146 ORTHO05D004843 3.0e-156 555.8 426 68.8
FAN23G2063 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.9e-156 555.4 426 70.9
CARHR142600 Cardamine hirsuta HOM05D004146 ORTHO05D004843 4.8e-154 548.5 428 69.4
TPR.G38442 Trifolium pratense HOM05D004146 ORTHO05D004843 1.4e-153 547.0 424 70.8
Thhalv10001452m.g Eutrema salsugineum HOM05D004146 ORTHO05D004843 2.4e-153 546.2 424 70.3
FAN28G1198 Fragaria x ananassa HOM05D004146 ORTHO05D004843 3.1e-153 545.8 437 69.1
PSO761G0652 Papaver somniferum HOM05D004146 ORTHO05D004843 3.1e-153 545.8 430 67.9
AL4G46770 Arabidopsis lyrata HOM05D004146 ORTHO05D004843 4.0e-153 545.4 428 69.9
THA.LOC104802140 Tarenaya hassleriana HOM05D004146 ORTHO05D004843 4.0e-153 545.4 440 67.5
Aa31LG1G28520 Aethionema arabicum HOM05D004146 ORTHO05D004843 5.3e-153 545.0 428 69.2
AT2G47210 Arabidopsis thaliana HOM05D004146 ORTHO05D004843 1.2e-152 543.9 428 69.6
Sp4g29200 Schrenkiella parvula HOM05D004146 ORTHO05D004843 1.2e-152 543.9 428 69.4
MD15G1342700 Malus domestica HOM05D004146 ORTHO05D004843 4.5e-152 542.0 428 69.6
ATR0564G334 Amborella trichopoda HOM05D004146 ORTHO05D004843 5.8e-152 541.6 424 67.9
FAN19G1384 Fragaria x ananassa HOM05D004146 ORTHO05D004843 5.8e-152 541.6 436 69.0
HPP92_024389 Vanilla planifolia HOM05D004146 ORTHO05D004843 1.3e-151 540.4 425 69.6
C04p00700 Brassica napus HOM05D004146 ORTHO05D004843 2.2e-151 539.7 424 68.4
Lalb_Chr06g0167021 Lupinus albus HOM05D004146 ORTHO05D004843 4.9e-151 538.5 422 68.5
BolC4t21705H Brassica oleracea HOM05D004146 ORTHO05D004843 1.1e-150 537.3 424 68.2
BcaC02g12586 Brassica carinata HOM05D004146 ORTHO05D004843 1.4e-150 537.0 424 68.2
BcaB06g29458 Brassica carinata HOM05D004146 ORTHO05D004843 3.2e-150 535.8 427 67.9
ClCG09G004890 Citrullus lanatus HOM05D004146 ORTHO05D004843 7.1e-150 534.6 436 67.9
BcaB02g08794 Brassica carinata HOM05D004146 ORTHO05D004843 1.2e-149 533.9 424 67.2
Aqoxy4G02480 Aquilegia oxysepala HOM05D004146 ORTHO05D004843 1.6e-149 533.5 428 68.7
Actinidia21373 Actinidia chinensis HOM05D004146 ORTHO05D004843 2.1e-149 533.1 423 70.2
Carub.0004s2994 Capsella rubella HOM05D004146 ORTHO05D004843 3.5e-149 532.3 402 71.4
BraSC79t46677Z Brassica rapa HOM05D004146 ORTHO05D004843 1.0e-148 530.8 427 68.4
DCAR_018267 Daucus carota HOM05D004146 ORTHO05D004843 1.0e-148 530.8 428 67.1
Lsat_1_v5_gn_0_33621 Lactuca sativa HOM05D004146 ORTHO05D004843 3.9e-148 528.9 430 68.6
BraA05t19061Z Brassica rapa HOM05D004146 ORTHO05D004843 8.7e-148 527.7 414 68.1
C04p72630 Brassica napus HOM05D004146 ORTHO05D004843 9.6e-147 524.2 428 67.1
BcaC02g06965 Brassica carinata HOM05D004146 ORTHO05D004843 2.1e-146 523.1 428 66.8
Carub.0004s2995 Capsella rubella HOM05D004146 ORTHO05D004843 8.2e-146 521.2 428 67.8
A04p34860 Brassica napus HOM05D004146 ORTHO05D004843 2.0e-144 516.5 453 64.5
unitig_736.g22928 Utricularia gibba HOM05D004146 ORTHO05D004843 3.8e-143 512.3 430 65.8
CDE10G1142 Ceratophyllum demersum HOM05D004146 ORTHO05D004843 6.5e-143 511.5 426 66.0
Os05g0540800 Oryza sativa ssp. japonica HOM05D004146 ORTHO05D004843 9.3e-142 507.7 427 65.1
Zm00001eb235700 Zea mays HOM05D004146 ORTHO05D004843 7.9e-141 504.6 427 63.9
Hma1.2p1_0965F.1_g242130 Hydrangea macrophylla HOM05D004146 ORTHO05D004843 1.9e-139 500.0 429 66.4
AUR62011755 Chenopodium quinoa HOM05D004146 ORTHO05D004843 2.5e-139 499.6 422 65.9
Medtr1g086590 Medicago truncatula HOM05D004146 ORTHO05D004843 4.3e-139 498.8 423 65.0
Hund09662 Selenicereus undatus HOM05D004146 ORTHO05D004843 1.3e-138 497.3 433 64.9
MBI19_g36749_MAGBIO Magnolia biondii HOM05D004146 ORTHO05D004843 6.3e-138 495.0 424 65.1
A05p00620 Brassica napus HOM05D004146 ORTHO05D004843 1.8e-137 493.4 392 68.4
Oeu044739.1 Olea europaea HOM05D004146 ORTHO05D004843 4.3e-131 472.2 392 65.6
Ca_10265_v3 Cicer arietinum L. HOM05D004146 ORTHO05D004843 4.1e-129 465.7 505 54.7
SEGI_29063 Sequoiadendron giganteum HOM05D004146 ORTHO05D004843 3.2e-126 456.1 439 58.5
TPR.G31750 Trifolium pratense HOM05D004146 ORTHO05D004843 7.4e-123 444.9 423 60.5
Haze_05083 Corylus avellana HOM05D004146 ORTHO05D004843 3.8e-119 432.6 452 56.2
Lj1A14G70 Lonicera japonica HOM05D004146 ORTHO05D004843 3.0e-116 422.9 340 66.8
Duzib138G1200 Durio zibethinus HOM05D004146 ORTHO05D004843 9.7e-115 417.9 426 58.2
CiPaw.07G120600 Carya illinoinensis HOM05D004146 ORTHO05D004843 2.8e-114 416.4 341 66.0
AagrBONN_evm.TU.Sc2ySwM_228.1245 Anthoceros agrestis HOM05D004146 ORTHO05D004843 8.5e-111 404.8 478 49.0
Mapoly0165s0024 Marchantia polymorpha HOM05D004146 ORTHO05D004843 3.6e-109 399.4 447 51.2
Pp3c1_35180 Physcomitrium patens HOM05D004146 ORTHO05D004843 1.5e-99 367.5 471 45.9
SMO244G0096 Selaginella moellendorffii HOM05D004146 ORTHO05D004843 2.6e-99 366.7 424 52.6
BcaC02g09008 Brassica carinata HOM05D004146 ORTHO05D004843 8.0e-93 345.1 431 51.0
Psat6g160560 Pisum sativum HOM05D004146 ORTHO05D004843 1.2e-91 341.3 399 51.4
SHI33153 Sapria himalayana HOM05D004146 ORTHO05D004843 2.2e-90 337.0 244 68.9
BolC4t25516H Brassica oleracea HOM05D004146 ORTHO05D004843 1.3e-87 327.8 338 56.8
Dinv33143 Davidia involucrata HOM05D004146 ORTHO05D004843 4.7e-85 319.3 423 47.3
CBR_g3593 Chara braunii HOM05D004146 ORTHO05D004843 3.5e-80 303.1 462 42.6
Psat6g160640 Pisum sativum HOM05D004146 ORTHO05D004843 1.3e-74 284.6 351 50.4
Mapoly0092s0082 Marchantia polymorpha HOM05D004146 ORTHO05D004843 1.9e-73 280.8 520 36.7
Pp3c2_4040 Physcomitrium patens HOM05D004146 ORTHO05D004843 4.1e-73 279.6 367 45.0
BolC4t25515H Brassica oleracea HOM05D004146 ORTHO05D004843 1.9e-57 227.6 174 65.5
SalBow3G0988 Salvia bowleyana HOM05D004146 ORTHO05D004843 1.6e-56 224.6 128 83.6
BolC4t28751H Brassica oleracea HOM05D004146 ORTHO05D004843 9.6e-54 215.3 195 64.6
C04p39500 Brassica napus HOM05D004146 ORTHO05D004843 1.3e-53 214.9 178 61.2
PRCOL_00004506 Prasinoderma coloniale HOM05D004146 ORTHO05D004843 1.3e-53 214.9 401 37.7
C04p39490 Brassica napus HOM05D004146 ORTHO05D004843 2.8e-53 213.8 179 60.9
BcaC02g09009 Brassica carinata HOM05D004146 ORTHO05D004843 3.8e-50 203.4 172 60.5
Lj1g0004326 Lotus japonicus HOM05D004146 ORTHO05D004843 1.4e-49 201.4 263 48.7
Actinidia20972 Actinidia chinensis HOM05D004146 ORTHO05D004843 3.3e-46 190.3 252 47.2
AagrBONN_evm.TU.Sc2ySwM_228.1331 Anthoceros agrestis HOM05D004146 ORTHO05D004843 7.3e-46 189.1 385 36.9
Cre03.g144907 Chlamydomonas reinhardtii HOM05D004146 ORTHO05D004843 4.9e-42 176.4 264 40.9
Oeu062253.1 Olea europaea HOM05D004146 ORTHO05D004843 7.1e-33 146.0 141 51.1
Psat6g160680 Pisum sativum HOM05D004146 ORTHO05D004843 7.9e-32 142.5 119 58.8
MCO05G453 Micromonas commoda HOM05D004146 ORTHO05D004843 6.2e-29 132.9 266 33.8
CAN.G111.15 Capsicum annuum HOM05D004146 ORTHO05D004843 2.4e-28 131.0 227 42.3
Lsat_1_v5_gn_2_7680 Lactuca sativa HOM05D004146 ORTHO05D004843 2.4e-28 131.0 131 61.1
Lsat_1_v5_gn_3_136441 Lactuca sativa HOM05D004146 ORTHO05D004843 2.9e-26 124.0 158 51.9
Lsat_1_v5_gn_8_147141 Lactuca sativa HOM05D004146 ORTHO05D004843 1.1e-25 122.1 138 55.1
Lj1A14G71 Lonicera japonica HOM05D004146 ORTHO05D004843 5.5e-25 119.8 103 66.0
TPR.G18531 Trifolium pratense HOM05D004146 ORTHO05D004843 1.6e-24 118.2 92 62.0
BcaC02g12616 Brassica carinata HOM05D004146 ORTHO05D004843 6.7e-23 112.8 172 41.9
Sabra02G0047100 Salix brachista HOM05D004503 ORTHO05D005460 1.1e-20 105.5 168 48.8
Cfa022451 Carpinus fangiana HOM05D004146 ORTHO05D004843 7.2e-17 92.8 320 26.9
GSVIVG01028163001 Vitis vinifera HOM05D004146 ORTHO05D004843 1.0e-15 89.0 57 75.4
BolC4t28750H Brassica oleracea HOM05D004146 ORTHO05D004843 3.0e-15 87.4 199 35.7
RcHm_v2.0_Chr2g0114941 Rosa chinensis HOM05D004146 ORTHO05D004843 3.0e-15 87.4 99 45.5
HPP92_024388 Vanilla planifolia HOM05D002498 ORTHO05D008129 6.7e-15 86.3 54 77.8
C04p39510 Brassica napus HOM05D004146 ORTHO05D004843 7.4e-14 82.8 120 50.8
VMungo1383G1227 Vigna mungo HOM05D004146 ORTHO05D000001 3.2e-09 67.4 43 79.1
Lsat_1_v5_gn_4_71221 Lactuca sativa HOM05D002292 ORTHO05D003256 4.7e-08 63.5 42 78.6
RcHm_v2.0_Chr6g0284911 Rosa chinensis HOM05D004215 ORTHO05D005293 6.1e-08 63.2 109 36.7
Oeu042819.1 Olea europaea HOM05D004146 ORTHO05D004843 3.0e-07 60.8 40 80.0
DCAR_017471 Daucus carota HOM05D004146 ORTHO05D004843 8.8e-07 59.3 174 30.5
CSS0026841 Camellia sinensis var. sinensis HOM05D004146 ORTHO05D004843 1.1e-06 58.9 32 90.6
SHI33154 Sapria himalayana HOM05D004146 ORTHO05D004843 7.4e-06 56.2 50 58.0


User provided reference genes

Program Settings