Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g068340.3 Solanum lycopersicum HOM05D004944 ORTHO05D005989 5.1e-285 983.8 516 100.0
Sopen01g030310 Solanum pennellii HOM05D004944 ORTHO05D005989 4.0e-274 947.6 504 98.6
CAN.G410.46 Capsicum annuum HOM05D004944 ORTHO05D005989 7.4e-236 820.5 501 85.4
Nitab4.5_0006307g0060 Nicotiana tabacum HOM05D004944 ORTHO05D005989 4.7e-190 668.3 505 71.3
Nitab4.5_0000316g0180 Nicotiana tabacum HOM05D004944 ORTHO05D005989 1.2e-169 600.5 408 77.2
Dinv32057 Davidia involucrata HOM05D004944 ORTHO05D005989 9.0e-157 557.8 532 57.1
Peaxi162Scf00309g00015 Petunia axillaris HOM05D004944 ORTHO05D005989 7.6e-156 554.7 557 57.3
Hma1.2p1_0184F.1_g081120 Hydrangea macrophylla HOM05D004944 ORTHO05D005989 8.7e-152 541.2 533 56.5
VMungo1080G1012 Vigna mungo HOM05D004944 ORTHO05D005989 3.8e-147 525.8 515 56.5
Medtr3g022850 Medicago truncatula HOM05D004944 ORTHO05D005989 4.9e-147 525.4 525 54.9
Cfa010847 Carpinus fangiana HOM05D004944 ORTHO05D005989 5.5e-146 521.9 536 53.7
TWI15G1108 Tripterygium wilfordii HOM05D004944 ORTHO05D005989 2.1e-145 520.0 528 55.3
Actinidia06272 Actinidia chinensis HOM05D004944 ORTHO05D005989 3.5e-145 519.2 533 54.0
Migut.N01817 Erythranthe guttata HOM05D004944 ORTHO05D005989 1.8e-144 516.9 547 51.7
Prupe.2G028500 Prunus persica HOM05D004944 ORTHO05D005989 1.8e-144 516.9 539 55.1
GSVIVG01000850001 Vitis vinifera HOM05D004944 ORTHO05D005989 1.5e-143 513.8 533 54.0
Glyma.11G150100 Glycine max HOM05D004944 ORTHO05D005989 1.9e-143 513.5 510 54.7
Ciclev10030882m.g Citrus clementina HOM05D004944 ORTHO05D005989 3.3e-143 512.7 536 56.2
Atru.chr11.2502 Acer truncatum HOM05D004944 ORTHO05D005989 1.3e-142 510.8 538 55.4
Gohir.A13G013200 Gossypium hirsutum HOM05D004944 ORTHO05D005989 2.8e-142 509.6 514 53.7
Lj3g0016020 Lotus japonicus HOM05D004944 ORTHO05D005989 6.2e-142 508.4 526 52.7
Sed0005559 Sechium edule HOM05D004944 ORTHO05D005989 1.1e-141 507.7 503 54.7
Cc02_g29470 Coffea canephora HOM05D004944 ORTHO05D005989 1.4e-141 507.3 529 52.7
MD02G1296200 Malus domestica HOM05D004944 ORTHO05D005989 6.9e-141 505.0 531 53.3
CiPaw.13G010200 Carya illinoinensis HOM05D004944 ORTHO05D005989 9.0e-141 504.6 508 52.8
CsaV3_5G036480 Cucumis sativus L. HOM05D004944 ORTHO05D005989 1.0e-139 501.1 510 51.6
MELO3C012446.2 Cucumis melo HOM05D004944 ORTHO05D005989 3.8e-139 499.2 503 52.7
Gohir.D13G014300 Gossypium hirsutum HOM05D004944 ORTHO05D005989 3.8e-139 499.2 506 53.6
Haze_03113 Corylus avellana HOM05D004944 ORTHO05D005989 6.5e-139 498.4 546 52.4
Gorai.013G015500 Gossypium raimondii HOM05D004944 ORTHO05D005989 8.4e-139 498.0 506 53.8
arahy.Tifrunner.gnm1.ann1.L5CKR4 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.1e-138 497.7 525 53.3
Potri.003G202300 Populus trichocarpa HOM05D004944 ORTHO05D005989 3.2e-138 496.1 531 51.6
QL04p013327 Quercus lobata HOM05D004944 ORTHO05D005989 3.2e-138 496.1 527 53.3
Duzib128G1953 Durio zibethinus HOM05D004944 ORTHO05D005989 9.3e-138 494.6 509 53.6
SGA_v2.0_scaffold5G02935 Striga asiatica HOM05D004944 ORTHO05D005989 3.5e-137 492.7 523 52.6
ClCG05G020810 Citrullus lanatus HOM05D004944 ORTHO05D005989 4.6e-137 492.3 534 51.1
arahy.Tifrunner.gnm1.ann1.YV81B1 Arachis hypogaea HOM05D004944 ORTHO05D005989 1.3e-136 490.7 549 51.5
COL.COLO4_25841 Corchorus olitorius HOM05D004944 ORTHO05D005989 8.7e-136 488.0 506 52.6
Manes.04G164000 Manihot esculenta HOM05D004944 ORTHO05D005989 1.3e-134 484.2 522 52.3
Thecc.10G005400 Theobroma cacao HOM05D004944 ORTHO05D005989 1.1e-133 481.1 508 53.1
TAR636G1724 Trochodendron aralioides HOM05D004944 ORTHO05D005989 1.5e-132 477.2 528 50.9
RcHm_v2.0_Chr1g0319541 Rosa chinensis HOM05D004944 ORTHO05D005989 2.5e-130 469.9 526 51.3
SalBow2G1212 Salvia bowleyana HOM05D004944 ORTHO05D005989 5.5e-130 468.8 536 50.0
TPR.G18800 Trifolium pratense HOM05D004944 ORTHO05D005989 1.2e-129 467.6 491 53.2
Sabra03G0149500 Salix brachista HOM05D004944 ORTHO05D005989 6.1e-129 465.3 570 48.2
HanXRQChr05g0145061 Helianthus annuus HOM05D004944 ORTHO05D005989 1.0e-128 464.5 511 52.8
CANSAT80G2771 Cannabis sativa HOM05D004944 ORTHO05D005989 2.3e-128 463.4 522 50.0
MBI17_g24522_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.0e-127 460.3 538 51.1
Eucgr.G03259 Eucalyptus grandis HOM05D004944 ORTHO05D005989 6.9e-125 451.8 521 48.0
AL7G21230 Arabidopsis lyrata HOM05D004944 ORTHO05D005989 4.5e-124 449.1 518 47.9
THA.LOC104819120 Tarenaya hassleriana HOM05D004944 ORTHO05D005989 1.3e-123 447.6 529 49.0
Thhalv10024629m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 6.5e-123 445.3 516 48.6
Lsat_1_v5_gn_9_47141 Lactuca sativa HOM05D004944 ORTHO05D005989 1.1e-122 444.5 506 50.0
FvH4_7g02220 Fragaria vesca HOM05D004944 ORTHO05D005989 1.4e-122 444.1 530 50.2
Aa31LG2G19510 Aethionema arabicum HOM05D004944 ORTHO05D005989 2.5e-122 443.4 517 50.5
FAN06G2455 Fragaria x ananassa HOM05D004944 ORTHO05D005989 9.4e-122 441.4 531 50.5
PGR031G0610 Punica granatum HOM05D004944 ORTHO05D005989 2.1e-121 440.3 508 51.4
Sp6g04870 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.1e-121 440.3 524 47.7
AT4G30870 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 3.6e-121 439.5 518 47.1
Cfa010848 Carpinus fangiana HOM05D004944 ORTHO05D005989 3.0e-120 436.4 473 52.0
A09p26720 Brassica napus HOM05D004944 ORTHO05D005989 3.9e-120 436.0 513 48.3
Carub.0007s0968 Capsella rubella HOM05D004944 ORTHO05D005989 5.1e-120 435.6 520 47.1
FAN03G3505 Fragaria x ananassa HOM05D004944 ORTHO05D005989 5.1e-120 435.6 535 48.0
CARHR238770 Cardamine hirsuta HOM05D004944 ORTHO05D005989 6.7e-120 435.3 523 47.6
BraA09t38244Z Brassica rapa HOM05D004944 ORTHO05D005989 1.5e-119 434.1 513 48.1
Rhsim07G0062200 Rhododendron simsii HOM05D004944 ORTHO05D005989 2.0e-119 433.7 668 43.7
Lalb_Chr04g0263921 Lupinus albus HOM05D004944 ORTHO05D005989 7.4e-119 431.8 450 53.3
BcaB01g01761 Brassica carinata HOM05D004944 ORTHO05D005989 1.1e-117 427.9 519 48.2
Psat5g213680 Pisum sativum HOM05D004944 ORTHO05D005989 1.1e-117 427.9 478 50.8
BcaC04g21249 Brassica carinata HOM05D004944 ORTHO05D005989 1.4e-117 427.6 514 47.5
C09p33850 Brassica napus HOM05D004944 ORTHO05D005989 1.4e-117 427.6 514 47.5
BolC9t56223H Brassica oleracea HOM05D004944 ORTHO05D005989 1.4e-117 427.6 514 47.5
FAN01G0470 Fragaria x ananassa HOM05D004944 ORTHO05D005989 7.0e-117 425.2 558 47.7
Phvul.005G033000 Phaseolus vulgaris HOM05D004944 ORTHO05D005989 5.9e-116 422.2 462 51.5
Nn7g36468 Nelumbo nucifera HOM05D004944 ORTHO05D005989 1.9e-114 417.2 511 48.7
Aqoxy1G00293 Aquilegia oxysepala HOM05D004944 ORTHO05D005989 1.3e-110 404.4 523 46.5
AUR62026814 Chenopodium quinoa HOM05D004944 ORTHO05D005989 6.3e-110 402.1 521 46.4
Cpa.g.sc197.13 Carica papaya HOM05D004944 ORTHO05D005989 1.4e-109 401.0 505 47.5
DCAR_009210 Daucus carota HOM05D004944 ORTHO05D005989 2.3e-104 383.6 511 45.4
PSO782G0837 Papaver somniferum HOM05D004944 ORTHO05D005989 2.0e-103 380.6 507 46.2
ECA232G0518 Erigeron canadensis HOM05D004944 ORTHO05D005989 3.8e-99 366.3 446 49.3
HPP92_001459 Vanilla planifolia HOM05D004944 ORTHO05D005989 8.5e-99 365.2 507 46.2
CDE01G0132 Ceratophyllum demersum HOM05D004944 ORTHO05D005989 6.8e-96 355.5 510 44.1
Os01g0948100 Oryza sativa ssp. japonica HOM05D004944 ORTHO05D005989 1.1e-93 348.2 530 42.6
Sc10g0004230 Simmondsia chinensis HOM05D004944 ORTHO05D005989 2.4e-93 347.1 467 43.0
Hund15708 Selenicereus undatus HOM05D004944 ORTHO05D005989 5.4e-93 345.9 507 43.8
SEGI_11905 Sequoiadendron giganteum HOM05D004944 ORTHO05D005989 9.1e-93 345.1 518 43.2
PSO339G0509 Papaver somniferum HOM05D004944 ORTHO05D005989 3.8e-91 339.7 504 41.5
PSO135G0630 Papaver somniferum HOM05D004944 ORTHO05D005989 3.6e-89 333.2 507 42.2
PSO384G2132 Papaver somniferum HOM05D004944 ORTHO05D005989 5.2e-88 329.3 504 41.5
AUR62037239 Chenopodium quinoa HOM05D004944 ORTHO05D005989 7.5e-87 325.5 506 42.1
Carub.0007s3598 Capsella rubella HOM05D004944 ORTHO05D005989 4.9e-86 322.8 506 41.7
Thhalv10024809m.g Eutrema salsugineum HOM05D004944 ORTHO05D005989 1.6e-84 317.8 503 41.2
EL10Ac2g02867 Beta vulgaris HOM05D004944 ORTHO05D005989 4.5e-84 316.2 506 42.1
vmacro13722 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 3.1e-80 303.5 470 46.0
Zm00001eb141330 Zea mays HOM05D004944 ORTHO05D005989 1.2e-79 301.6 497 42.1
MD07G1077800 Malus domestica HOM05D004944 ORTHO05D005989 1.3e-75 288.1 422 43.8
Pp3c16_12330 Physcomitrium patens HOM05D004944 ORTHO05D005989 1.8e-72 277.7 513 36.1
Ca_04546_v3 Cicer arietinum L. HOM05D004944 ORTHO05D005989 8.9e-72 275.4 439 41.7
Mapoly0005s0161 Marchantia polymorpha HOM05D004944 ORTHO05D005989 1.2e-71 275.0 509 38.1
RcHm_v2.0_Chr3g0488831 Rosa chinensis HOM05D004944 ORTHO05D005989 6.4e-70 269.2 412 42.0
FAN10G4268 Fragaria x ananassa HOM05D004944 ORTHO05D005989 1.9e-69 267.7 221 63.8
SMO337G0105 Selaginella moellendorffii HOM05D004944 ORTHO05D005989 1.9e-69 267.7 509 36.9
unitig_744.g24021 Utricularia gibba HOM05D004944 ORTHO05D005989 4.6e-68 263.1 530 35.8
AagrBONN_evm.TU.Sc2ySwM_228.3522 Anthoceros agrestis HOM05D004944 ORTHO05D005989 4.3e-66 256.5 505 33.7
AT5G39770 Arabidopsis thaliana HOM05D004944 ORTHO05D005989 8.9e-56 222.2 486 34.6
Lj9A645G78 Lonicera japonica HOM05D004944 ORTHO05D005989 4.4e-55 219.9 336 44.3
CSS0031841 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 1.2e-47 195.3 197 56.3
Prupe.7G020900 Prunus persica HOM05D004944 ORTHO05D005989 7.1e-45 186.0 431 34.8
FAN01G1245 Fragaria x ananassa HOM05D004944 ORTHO05D005989 4.6e-44 183.3 152 63.8
ATR0721G017 Amborella trichopoda HOM05D004944 ORTHO05D005989 8.7e-43 179.1 378 34.4
CBR_g44528 Chara braunii HOM05D004944 ORTHO05D005989 1.5e-42 178.3 719 25.9
Lj9A645G77 Lonicera japonica HOM05D004944 ORTHO05D005989 1.3e-35 155.2 125 62.4
Sp5g22360 Schrenkiella parvula HOM05D004944 ORTHO05D005989 2.5e-34 151.0 140 56.4
vmacro13723 Vaccinium macrocarpon HOM05D004944 ORTHO05D005989 2.5e-34 151.0 101 69.3
BcaNung04417 Brassica carinata HOM05D000343 ORTHO05D003187 1.2e-31 142.1 165 46.7
Zm00001eb141350 Zea mays HOM05D004944 ORTHO05D005989 6.5e-30 136.3 106 64.2
SHI03969 Sapria himalayana HOM05D004944 ORTHO05D005989 2.8e-25 120.9 167 45.5
Psat5g213600 Pisum sativum HOM05D004944 ORTHO05D005989 8.2e-25 119.4 153 46.4
Peaxi162Scf00309g00011 Petunia axillaris HOM05D004944 ORTHO05D005989 6.5e-22 109.8 56 94.6
CSS0024385 Camellia sinensis var. sinensis HOM05D004944 ORTHO05D005989 8.4e-22 109.4 99 56.6
RcHm_v2.0_Chr4g0391951 Rosa chinensis HOM05D004944 ORTHO05D005989 7.1e-21 106.3 102 55.9
Prupe.2G099800 Prunus persica HOM05D004944 ORTHO05D005989 3.3e-18 97.4 286 28.7
MCO01G407 Micromonas commoda HOM05D004944 ORTHO05D005989 7.4e-18 96.3 453 25.2
Lj9A645G79 Lonicera japonica HOM05D004944 ORTHO05D005989 6.3e-17 93.2 66 66.7
SHI03974 Sapria himalayana HOM05D004944 ORTHO05D005989 6.3e-17 93.2 142 38.7
Sc10g0004240 Simmondsia chinensis HOM05D004944 ORTHO05D005989 1.4e-16 92.0 53 81.1
MBI17_g33308_MAGBIO Magnolia biondii HOM05D004944 ORTHO05D005989 2.6e-15 87.8 53 81.1
Lalb_Chr04g0263911 Lupinus albus HOM05D004944 ORTHO05D005989 4.5e-15 87.0 67 62.7
SHI03976 Sapria himalayana HOM05D004944 ORTHO05D005989 5.9e-15 86.7 59 62.7
PRCOL_00004679 Prasinoderma coloniale HOM05D004944 ORTHO05D005989 2.7e-12 77.8 121 40.5
SHI03965 Sapria himalayana HOM05D004944 ORTHO05D005989 1.8e-11 75.1 78 48.7
Prupe.2G032400 Prunus persica HOM05D004944 ORTHO05D005989 3.9e-11 73.9 71 56.3
Cre12.g555050 Chlamydomonas reinhardtii HOM05D004944 ORTHO05D005989 7.4e-10 69.7 106 39.6
Haze_26725 Corylus avellana HOM05D004944 ORTHO05D005989 9.7e-10 69.3 93 41.9
RcHm_v2.0_Chr2g0114761 Rosa chinensis HOM05D004944 ORTHO05D005989 2.4e-08 64.7 42 71.4
RcHm_v2.0_Chr5g0078731 Rosa chinensis HOM05D004944 ORTHO05D005989 2.4e-08 64.7 82 45.1


User provided reference genes

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