Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g020130.3 Solanum lycopersicum HOM05D003382 ORTHO05D003930 5.1e-111 404.4 208 100.0
Solyc11g011850.2 Solanum lycopersicum HOM05D003382 ORTHO05D003930 1.0e-106 390.2 205 98.5
Sopen11g006680 Solanum pennellii HOM05D003382 ORTHO05D003930 2.9e-106 388.7 205 98.0
PGSC0003DMG400013327 Solanum tuberosum HOM05D003382 ORTHO05D003930 1.4e-105 386.3 205 97.1
Sopen00g006600 Solanum pennellii HOM05D000002 ORTHO05D000001 5.1e-103 377.9 200 97.5
CAN.G222.166 Capsicum annuum HOM05D003382 ORTHO05D003930 3.3e-78 295.4 211 78.2
Cc07_g06350 Coffea canephora HOM05D003382 ORTHO05D003930 4.4e-70 268.5 215 68.8
Dinv30023 Davidia involucrata HOM05D003382 ORTHO05D003930 9.8e-70 267.3 209 69.4
Dinv26854 Davidia involucrata HOM05D003382 ORTHO05D003930 3.5e-67 258.8 206 67.5
Oeu014792.2 Olea europaea HOM05D003382 ORTHO05D003930 8.6e-66 254.2 211 68.2
Lj2g0012816 Lotus japonicus HOM05D003382 ORTHO05D003930 4.2e-65 251.9 206 68.0
SGA_v2.0_scaffold143G35795 Striga asiatica HOM05D003382 ORTHO05D003930 4.2e-65 251.9 207 67.6
Actinidia03805 Actinidia chinensis HOM05D003382 ORTHO05D003930 7.2e-65 251.1 206 65.0
DCAR_021478 Daucus carota HOM05D003382 ORTHO05D003930 7.2e-65 251.1 208 65.9
Ciclev10025401m.g Citrus clementina HOM05D003382 ORTHO05D003930 1.6e-64 250.0 207 65.7
Atru.chr3.266 Acer truncatum HOM05D003382 ORTHO05D003930 3.6e-64 248.8 209 66.0
Hma1.2p1_2648F.1_g326090 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 3.6e-64 248.8 213 64.8
TPR.G26871 Trifolium pratense HOM05D003382 ORTHO05D003930 4.7e-64 248.4 206 65.5
Oeu013240.1 Olea europaea HOM05D003382 ORTHO05D003930 8.0e-64 247.7 208 66.3
SGA_v2.0_scaffold15G07357 Striga asiatica HOM05D003382 ORTHO05D003930 8.0e-64 247.7 210 66.2
unitig_21.g20471 Utricularia gibba HOM05D003382 ORTHO05D003930 8.0e-64 247.7 207 65.2
FAN19G0190 Fragaria x ananassa HOM05D003382 ORTHO05D003930 2.3e-63 246.1 210 65.7
TWI09G1091 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 2.3e-63 246.1 206 66.5
TAR625G0350 Trochodendron aralioides HOM05D003382 ORTHO05D003930 3.0e-63 245.7 208 64.9
Sc03g0001810 Simmondsia chinensis HOM05D003382 ORTHO05D003930 4.0e-63 245.4 214 62.1
FvH4_1g16500 Fragaria vesca HOM05D003382 ORTHO05D003930 5.2e-63 245.0 210 65.2
FAN26G1389 Fragaria x ananassa HOM05D003382 ORTHO05D003930 1.2e-62 243.8 208 65.9
FAN28G2539 Fragaria x ananassa HOM05D003382 ORTHO05D003930 1.2e-62 243.8 208 66.8
Prupe.6G230500 Prunus persica HOM05D003382 ORTHO05D003930 2.0e-62 243.0 208 64.9
arahy.Tifrunner.gnm1.ann1.27CBEW Arachis hypogaea HOM05D003382 ORTHO05D003930 2.6e-62 242.7 213 65.3
TWI73G0794 Tripterygium wilfordii HOM05D003382 ORTHO05D003930 2.6e-62 242.7 210 64.3
Ca_24746_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 4.4e-62 241.9 206 64.1
FAN23G3096 Fragaria x ananassa HOM05D003382 ORTHO05D003930 4.4e-62 241.9 208 66.3
RcHm_v2.0_Chr2g0106411 Rosa chinensis HOM05D003382 ORTHO05D003930 4.4e-62 241.9 212 64.2
MSTRG.3440 Avicennia marina HOM05D003382 ORTHO05D003930 5.7e-62 241.5 208 64.4
Potri.005G141500 Populus trichocarpa HOM05D003382 ORTHO05D003930 7.5e-62 241.1 207 66.7
FAN28G1977 Fragaria x ananassa HOM05D003382 ORTHO05D003930 9.8e-62 240.7 207 64.7
CANSAT25G0401 Cannabis sativa HOM05D003382 ORTHO05D003930 1.3e-61 240.4 216 61.6
Hund16361 Selenicereus undatus HOM05D003382 ORTHO05D003930 1.3e-61 240.4 210 62.9
EL10Ac6g15703 Beta vulgaris HOM05D003382 ORTHO05D003930 2.2e-61 239.6 208 63.5
Psat0s1867g0120 Pisum sativum HOM05D003382 ORTHO05D003930 2.2e-61 239.6 207 65.7
MSTRG.15375 Avicennia marina HOM05D003382 ORTHO05D003930 2.8e-61 239.2 206 63.6
Glyma.01G189200 Glycine max HOM05D003382 ORTHO05D003930 2.8e-61 239.2 213 64.3
Lsat_1_v5_gn_4_164401 Lactuca sativa HOM05D003382 ORTHO05D003930 2.8e-61 239.2 213 63.4
PGR004G0325 Punica granatum HOM05D003382 ORTHO05D003930 2.8e-61 239.2 206 65.0
Potri.007G047500 Populus trichocarpa HOM05D003382 ORTHO05D003930 3.7e-61 238.8 207 64.7
Sabra07G0042400 Salix brachista HOM05D003382 ORTHO05D003930 6.3e-61 238.0 207 64.7
arahy.Tifrunner.gnm1.ann1.S4MMCZ Arachis hypogaea HOM05D003382 ORTHO05D003930 8.3e-61 237.7 213 64.8
Lsat_1_v5_gn_2_85701 Lactuca sativa HOM05D003382 ORTHO05D003930 8.3e-61 237.7 210 64.8
MD02G1177600 Malus domestica HOM05D003382 ORTHO05D003930 8.3e-61 237.7 212 65.1
Sed0001836 Sechium edule HOM05D003382 ORTHO05D003930 8.3e-61 237.7 206 64.6
Sed0013280 Sechium edule HOM05D003382 ORTHO05D003930 1.1e-60 237.3 206 64.1
Glyma.11G053000 Glycine max HOM05D003382 ORTHO05D003930 1.4e-60 236.9 208 63.9
Manes.13G119600 Manihot esculenta HOM05D003382 ORTHO05D003930 1.8e-60 236.5 213 64.3
CiPaw.01G014100 Carya illinoinensis HOM05D003382 ORTHO05D003930 2.4e-60 236.1 216 61.6
VMungo1215G2685 Vigna mungo HOM05D003382 ORTHO05D003930 2.4e-60 236.1 211 64.0
Cpa.g.sc55.103 Carica papaya HOM05D003382 ORTHO05D003930 3.1e-60 235.7 209 63.2
QL06p040205 Quercus lobata HOM05D003382 ORTHO05D003930 4.1e-60 235.3 211 63.0
AUR62003925 Chenopodium quinoa HOM05D003382 ORTHO05D003930 5.4e-60 235.0 210 63.3
Lalb_Chr05g0213401 Lupinus albus HOM05D003382 ORTHO05D003930 7.0e-60 234.6 211 61.6
Sabra05G0112900 Salix brachista HOM05D003382 ORTHO05D003930 9.2e-60 234.2 208 65.9
Eucgr.I00880 Eucalyptus grandis HOM05D003382 ORTHO05D003930 1.2e-59 233.8 200 63.5
Thecc.01G062100 Theobroma cacao HOM05D003382 ORTHO05D003930 1.2e-59 233.8 206 62.1
CsaV3_6G043470 Cucumis sativus L. HOM05D003382 ORTHO05D003930 2.0e-59 233.0 215 61.4
Duzib147G0315 Durio zibethinus HOM05D003382 ORTHO05D003930 2.0e-59 233.0 206 63.1
COL.COLO4_11466 Corchorus olitorius HOM05D003382 ORTHO05D003930 2.7e-59 232.6 206 62.1
TAR628G1387 Trochodendron aralioides HOM05D003382 ORTHO05D003930 2.7e-59 232.6 209 61.2
Manes.12G107600 Manihot esculenta HOM05D003382 ORTHO05D003930 3.5e-59 232.3 211 63.0
GSVIVG01022064001 Vitis vinifera HOM05D003382 ORTHO05D003930 3.5e-59 232.3 206 62.1
MELO3C007577.2 Cucumis melo HOM05D003382 ORTHO05D003930 4.5e-59 231.9 215 60.9
ClCG01G016990 Citrullus lanatus HOM05D003382 ORTHO05D003930 5.9e-59 231.5 218 62.4
Duzib264G1059 Durio zibethinus HOM05D003382 ORTHO05D003930 5.9e-59 231.5 206 62.6
CiPaw.02G007100 Carya illinoinensis HOM05D003382 ORTHO05D003930 7.8e-59 231.1 207 60.9
Haze_15362 Corylus avellana HOM05D003382 ORTHO05D003930 7.8e-59 231.1 206 63.1
Phvul.002G016000 Phaseolus vulgaris HOM05D003382 ORTHO05D003930 7.8e-59 231.1 208 62.5
Gohir.A02G155500 Gossypium hirsutum HOM05D003382 ORTHO05D003930 1.0e-58 230.7 212 62.7
Gohir.D03G025200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 1.0e-58 230.7 212 62.7
Gorai.003G026800 Gossypium raimondii HOM05D003382 ORTHO05D003930 1.0e-58 230.7 212 62.7
Lj7A75T29 Lonicera japonica HOM05D003382 ORTHO05D003930 1.0e-58 230.7 202 64.4
Lj7A81T14 Lonicera japonica HOM05D003382 ORTHO05D003930 1.0e-58 230.7 202 64.4
HanXRQChr15g0491931 Helianthus annuus HOM05D003382 ORTHO05D003930 1.3e-58 230.3 209 60.8
Rhsim08G0098200 Rhododendron simsii HOM05D003382 ORTHO05D003930 1.3e-58 230.3 208 63.9
Oeu009828.1 Olea europaea HOM05D003382 ORTHO05D003930 2.3e-58 229.6 211 60.7
Gohir.D11G202200 Gossypium hirsutum HOM05D003382 ORTHO05D003930 3.8e-58 228.8 212 61.8
Gorai.007G216800 Gossypium raimondii HOM05D003382 ORTHO05D003930 3.8e-58 228.8 212 61.8
Cfa004049 Carpinus fangiana HOM05D003382 ORTHO05D003930 5.0e-58 228.4 204 63.7
Duzib187G0504 Durio zibethinus HOM05D003382 ORTHO05D003930 5.0e-58 228.4 206 61.7
MD15G1287400 Malus domestica HOM05D003382 ORTHO05D003930 6.6e-58 228.0 212 62.3
Nn1g04747 Nelumbo nucifera HOM05D003382 ORTHO05D003930 1.1e-57 227.3 198 59.6
Migut.L00178 Erythranthe guttata HOM05D003382 ORTHO05D003930 1.9e-57 226.5 207 62.8
Aqoxy5G01170 Aquilegia oxysepala HOM05D003382 ORTHO05D003930 2.5e-57 226.1 212 60.8
Gohir.A11G196300 Gossypium hirsutum HOM05D003382 ORTHO05D003930 2.5e-57 226.1 212 60.8
THA.LOC104827351 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 4.3e-57 225.3 200 63.0
TAR376G0471 Trochodendron aralioides HOM05D003382 ORTHO05D003930 4.3e-57 225.3 211 60.2
THA.LOC104807598 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 1.2e-56 223.8 206 62.6
Hma1.2p1_0017F.1_g011810 Hydrangea macrophylla HOM05D003382 ORTHO05D003930 2.1e-56 223.0 198 63.1
THA.LOC104819856 Tarenaya hassleriana HOM05D003382 ORTHO05D003930 2.1e-56 223.0 206 62.1
ECA232G1178 Erigeron canadensis HOM05D003382 ORTHO05D003930 3.6e-56 222.2 220 57.7
Medtr5g016600 Medicago truncatula HOM05D003382 ORTHO05D003930 1.0e-55 220.7 207 61.4
HanXRQChr14g0460431 Helianthus annuus HOM05D003382 ORTHO05D003930 1.4e-55 220.3 206 56.8
Aa31LG1G15760 Aethionema arabicum HOM05D003382 ORTHO05D003930 1.8e-55 219.9 197 60.9
Lalb_Chr16g0378671 Lupinus albus HOM05D003382 ORTHO05D003930 3.1e-55 219.2 215 59.5
PSO541G0593 Papaver somniferum HOM05D003382 ORTHO05D003930 4.0e-55 218.8 196 58.7
PSO675G2844 Papaver somniferum HOM05D003382 ORTHO05D003930 2.0e-54 216.5 196 58.2
AT5G67230 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 2.6e-54 216.1 195 60.0
Thhalv10024924m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 2.6e-54 216.1 211 60.2
Lalb_Chr09g0323331 Lupinus albus HOM05D003382 ORTHO05D003930 2.6e-54 216.1 213 58.7
CSS0022388 Camellia sinensis var. sinensis HOM05D003382 ORTHO05D003930 3.4e-54 215.7 206 58.3
Sp7g34880 Schrenkiella parvula HOM05D003382 ORTHO05D003930 4.4e-54 215.3 208 60.6
AL7G13650 Arabidopsis lyrata HOM05D003382 ORTHO05D003930 9.8e-54 214.2 206 59.7
AT4G36890 Arabidopsis thaliana HOM05D003382 ORTHO05D003930 2.2e-53 213.0 208 59.1
Carub.0007s0306 Capsella rubella HOM05D003382 ORTHO05D003930 2.2e-53 213.0 206 58.3
SHI34083 Sapria himalayana HOM05D003382 ORTHO05D003930 2.9e-53 212.6 195 57.9
Migut.H00405 Erythranthe guttata HOM05D003382 ORTHO05D003930 1.9e-52 209.9 208 58.2
Sp2g29440 Schrenkiella parvula HOM05D003382 ORTHO05D003930 1.9e-52 209.9 197 58.4
Lj4g0013634 Lotus japonicus HOM05D003382 ORTHO05D003930 2.4e-52 209.5 214 55.6
Thhalv10004084m.g Eutrema salsugineum HOM05D003382 ORTHO05D003930 3.2e-52 209.1 204 59.3
Carub.0008s2728 Capsella rubella HOM05D003382 ORTHO05D003930 2.0e-51 206.5 195 57.4
unitig_744.g24374 Utricularia gibba HOM05D003382 ORTHO05D003930 2.0e-51 206.5 184 58.7
Aa31LG6G14090 Aethionema arabicum HOM05D003382 ORTHO05D003930 3.5e-51 205.7 209 55.5
CARHR245620 Cardamine hirsuta HOM05D003382 ORTHO05D003930 4.6e-51 205.3 209 56.9
CARHR280400 Cardamine hirsuta HOM05D003382 ORTHO05D003930 7.8e-51 204.5 207 55.1
Glyma.16G095800 Glycine max HOM05D003382 ORTHO05D003930 1.3e-50 203.8 207 56.0
PSO170G3452 Papaver somniferum HOM05D003382 ORTHO05D003930 1.3e-50 203.8 211 56.4
PSO210G2217 Papaver somniferum HOM05D003382 ORTHO05D003930 1.7e-50 203.4 211 56.9
Glyma.17G168400 Glycine max HOM05D003382 ORTHO05D003930 1.5e-49 200.3 207 58.0
DCAR_025752 Daucus carota HOM05D003382 ORTHO05D003930 1.9e-49 199.9 211 55.5
Medtr4g094912 Medicago truncatula HOM05D003382 ORTHO05D003930 3.3e-49 199.1 205 55.1
BcaC06g34805 Brassica carinata HOM05D003382 ORTHO05D003930 4.3e-49 198.7 212 56.6
CDE01G0400 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 4.3e-49 198.7 198 55.6
BraA07t29399Z Brassica rapa HOM05D003382 ORTHO05D003930 7.3e-49 198.0 212 57.1
A07p16740 Brassica napus HOM05D003382 ORTHO05D003930 2.1e-48 196.4 212 56.6
BolC7t42967H Brassica oleracea HOM05D003382 ORTHO05D003930 2.8e-48 196.1 212 56.1
Sc07g0000690 Simmondsia chinensis HOM05D003382 ORTHO05D003930 4.7e-48 195.3 208 55.8
C07p24470 Brassica napus HOM05D003382 ORTHO05D003930 6.2e-48 194.9 212 55.7
Ca_22129_v3 Cicer arietinum L. HOM05D003382 ORTHO05D003930 6.8e-47 191.4 211 53.6
A01p01740 Brassica napus HOM05D003382 ORTHO05D003930 8.9e-47 191.0 205 57.1
BcaNung02528 Brassica carinata HOM05D003382 ORTHO05D003930 1.2e-46 190.7 206 57.8
C01p01910 Brassica napus HOM05D003382 ORTHO05D003930 1.2e-46 190.7 206 57.8
Psat2g028760 Pisum sativum HOM05D003382 ORTHO05D003930 1.2e-46 190.7 209 52.6
BolC1t00183H Brassica oleracea HOM05D003382 ORTHO05D003930 1.5e-46 190.3 206 57.8
BraA01t00166Z Brassica rapa HOM05D003382 ORTHO05D003930 3.4e-46 189.1 205 57.1
TPR.G14589 Trifolium pratense HOM05D003382 ORTHO05D003930 3.4e-46 189.1 204 53.9
VMungo0251G2741 Vigna mungo HOM05D003382 ORTHO05D003930 5.8e-46 188.3 195 55.4
Rhsim10G0113400 Rhododendron simsii HOM05D003382 ORTHO05D003930 2.2e-45 186.4 197 56.9
vmacro05261 Vaccinium macrocarpon HOM05D003382 ORTHO05D003930 6.4e-45 184.9 191 56.5
BcaB02g09942 Brassica carinata HOM05D003382 ORTHO05D003930 9.2e-44 181.0 212 52.4
AUR62038239 Chenopodium quinoa HOM05D003382 ORTHO05D003930 9.2e-44 181.0 208 53.8
ATR0762G014 Amborella trichopoda HOM05D003382 ORTHO05D003930 4.6e-43 178.7 200 51.0
Eucgr.H02219 Eucalyptus grandis HOM05D003382 ORTHO05D003930 3.0e-42 176.0 210 50.5
Zm00001eb273460 Zea mays HOM05D003382 ORTHO05D003930 9.2e-36 154.5 218 44.5
Lj4C155T11 Lonicera japonica HOM05D003382 ORTHO05D003930 1.2e-35 154.1 166 55.4
Zm00001eb225770 Zea mays HOM05D003382 ORTHO05D003930 3.5e-35 152.5 204 45.6
CDE02G3038 Ceratophyllum demersum HOM05D003382 ORTHO05D003930 1.0e-34 151.0 99 69.7
HPP92_017364 Vanilla planifolia HOM05D003382 ORTHO05D003930 3.9e-34 149.1 95 73.7
TAR381G0691 Trochodendron aralioides HOM05D003382 ORTHO05D003930 2.1e-32 143.3 164 50.0
SEGI_35989 Sequoiadendron giganteum HOM05D003382 ORTHO05D003930 5.8e-30 135.2 97 63.9
SMO172G0036 Selaginella moellendorffii HOM05D003382 ORTHO05D003930 1.7e-29 133.7 178 43.8
Mapoly0004s0253 Marchantia polymorpha HOM05D003382 ORTHO05D003930 5.4e-28 128.6 211 42.2
HanXRQChr01g0004101 Helianthus annuus HOM05D003382 ORTHO05D003930 2.5e-25 119.8 70 77.1
Peaxi162Scf00078g01420 Petunia axillaris HOM05D003382 ORTHO05D003930 7.3e-25 118.2 152 51.3
Nitab4.5_0000156g0110 Nicotiana tabacum HOM05D003382 ORTHO05D003930 1.4e-23 114.0 120 62.5
ECA238G0958 Erigeron canadensis HOM05D003382 ORTHO05D003930 5.3e-23 112.1 70 74.3
Pp3c9_16190 Physcomitrium patens HOM05D003382 ORTHO05D003930 4.4e-22 109.0 176 39.8
Glyma.05G096602 Glycine max HOM05D003382 ORTHO05D003930 6.4e-21 105.1 70 72.9
Sed0025631 Sechium edule HOM05D003382 ORTHO05D003930 8.4e-21 104.8 70 71.4
Pp3c15_16210 Physcomitrium patens HOM05D003382 ORTHO05D003930 1.4e-20 104.0 94 53.2
Migut.C00421 Erythranthe guttata HOM05D003382 ORTHO05D003930 6.0e-19 98.6 83 60.2
Pp3c18_10000 Physcomitrium patens HOM05D003382 ORTHO05D003930 2.5e-17 93.2 197 35.5
Zm00001eb432200 Zea mays HOM05D003382 ORTHO05D003930 5.3e-15 85.5 193 35.2
Nitab4.5_0002465g0060 Nicotiana tabacum HOM05D003382 ORTHO05D003930 7.6e-14 81.6 47 91.5
Os04g0650366 Oryza sativa ssp. japonica HOM05D003382 ORTHO05D003930 1.7e-13 80.5 176 33.5
FvH4_4g27041 Fragaria vesca HOM05D003382 ORTHO05D003930 8.4e-13 78.2 59 66.1
Gorai.004G051000 Gossypium raimondii HOM05D003382 ORTHO05D003930 5.4e-12 75.5 49 73.5
Nitab4.5_0002214g0040 Nicotiana tabacum HOM05D003382 ORTHO05D003930 7.9e-11 71.6 50 82.0
Zm00001eb068390 Zea mays HOM05D003382 ORTHO05D003930 6.7e-10 68.6 186 32.3
ECA246G4334 Erigeron canadensis HOM05D003382 ORTHO05D003930 8.7e-10 68.2 52 57.7
ECA246G5087 Erigeron canadensis HOM05D003382 ORTHO05D003930 1.3e-08 64.3 52 53.8
Zm00001eb091040 Zea mays HOM05D000062 ORTHO05D013119 4.8e-08 62.4 137 35.0
Actinidia16465 Actinidia chinensis HOM05D003382 ORTHO05D003930 1.8e-07 60.5 195 29.7
AagrBONN_evm.TU.Sc2ySwM_369.389 Anthoceros agrestis HOM05D003382 ORTHO05D003930 1.8e-07 60.5 48 56.2
HPP92_017363 Vanilla planifolia HOM05D003382 ORTHO05D003930 2.4e-07 60.1 62 56.5
SMO174G0138 Selaginella moellendorffii HOM05D003382 ORTHO05D003930 2.0e-06 57.0 205 29.3
Zm00001eb231480 Zea mays HOM05D003382 ORTHO05D013119 9.9e-06 54.7 125 32.0


User provided reference genes

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