Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026982 Sechium edule HOM05D000706 ORTHO05D012096 2.5e-122 442.2 239 100.0
Sed0004427 Sechium edule HOM05D000706 ORTHO05D001554 2.9e-57 226.1 208 65.4
MELO3C016482.2 Cucumis melo HOM05D000706 ORTHO05D001554 5.4e-48 195.3 198 54.0
ClCG10G007330 Citrullus lanatus HOM05D000706 ORTHO05D001554 2.1e-47 193.4 215 52.1
Dinv29666 Davidia involucrata HOM05D000706 ORTHO05D001554 1.2e-18 97.8 196 40.8
MD15G1440800 Malus domestica HOM05D000706 ORTHO05D012096 2.2e-17 93.6 104 45.2
Manes.10G110800 Manihot esculenta HOM05D000706 ORTHO05D001554 2.9e-17 93.2 97 48.5
Prupe.1G582800 Prunus persica HOM05D000706 ORTHO05D001554 1.9e-16 90.5 98 46.9
TWI59G0710 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 1.3e-14 84.3 111 41.4
RcHm_v2.0_Chr6g0272281 Rosa chinensis HOM05D000706 ORTHO05D012096 3.0e-14 83.2 121 41.3
QL02p102391 Quercus lobata HOM05D043302 ORTHO05D012096 5.1e-14 82.4 106 43.4
QL02p103028 Quercus lobata HOM05D043302 ORTHO05D012096 5.1e-14 82.4 106 43.4
Lj6g0005324 Lotus japonicus HOM05D000706 ORTHO05D001554 4.3e-13 79.3 107 45.8
SHI25322 Sapria himalayana HOM05D000706 ORTHO05D012096 4.3e-13 79.3 231 32.0
TAR628G1033 Trochodendron aralioides HOM05D000706 ORTHO05D012096 7.4e-13 78.6 110 40.9
Aqoxy7G00126_Aqoxy7G00127 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 9.7e-13 78.2 104 37.5
SalBow6G2696 Salvia bowleyana HOM05D000706 ORTHO05D001554 2.2e-12 77.0 119 34.5
Cc02_g27620 Coffea canephora HOM05D000706 ORTHO05D001554 4.8e-12 75.9 96 41.7
Duzib147G0053 Durio zibethinus HOM05D000706 ORTHO05D001554 1.1e-11 74.7 86 39.5
Dinv09371 Davidia involucrata HOM05D000706 ORTHO05D001554 1.4e-11 74.3 127 33.1
Potri.004G133600 Populus trichocarpa HOM05D000706 ORTHO05D001554 3.1e-11 73.2 98 37.8
Ca_17061_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 4.1e-11 72.8 91 44.0
Duzib132G0489 Durio zibethinus HOM05D000706 ORTHO05D001554 5.3e-11 72.4 91 39.6
Ca_25266_v3 Cicer arietinum L. HOM05D000706 ORTHO05D001554 6.9e-11 72.0 111 36.0
TAR376G1119 Trochodendron aralioides HOM05D000706 ORTHO05D001554 6.9e-11 72.0 111 36.0
EL10Ac6g14021 Beta vulgaris HOM05D000706 ORTHO05D001554 1.2e-10 71.2 86 45.3
FvH4_2g12310 Fragaria vesca HOM05D000706 ORTHO05D001554 1.2e-10 71.2 92 42.4
FvH4_1g25810 Fragaria vesca HOM05D000706 ORTHO05D001554 1.5e-10 70.9 107 38.3
FAN28G2355 Fragaria x ananassa HOM05D000706 ORTHO05D001554 1.5e-10 70.9 107 38.3
Hma1.2p1_0157F.1_g069030 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 1.5e-10 70.9 88 38.6
Hma1.2p1_1368F.1_g278556 Hydrangea macrophylla HOM05D017178 ORTHO05D012096 1.5e-10 70.9 88 38.6
Nitab4.5_0003361g0020 Nicotiana tabacum HOM05D000706 ORTHO05D001554 1.5e-10 70.9 89 36.0
Rhsim06G0200400 Rhododendron simsii HOM05D017178 ORTHO05D012096 1.5e-10 70.9 103 35.9
GSVIVG01023195001 Vitis vinifera HOM05D000706 ORTHO05D001554 1.5e-10 70.9 104 37.5
CSS0020817 Camellia sinensis var. sinensis HOM05D000185 ORTHO05D001554 2.0e-10 70.5 81 44.4
COL.COLO4_12141 Corchorus olitorius HOM05D000706 ORTHO05D001554 2.0e-10 70.5 108 35.2
FAN27G2281 Fragaria x ananassa HOM05D000706 ORTHO05D001554 2.0e-10 70.5 116 38.8
Sabra04G0084500 Salix brachista HOM05D000706 ORTHO05D001554 2.0e-10 70.5 104 37.5
Thecc.01G144400 Theobroma cacao HOM05D000706 ORTHO05D001554 2.6e-10 70.1 89 37.1
FAN26G0079 Fragaria x ananassa HOM05D000706 ORTHO05D001554 3.4e-10 69.7 107 38.3
Manes.17G021800 Manihot esculenta HOM05D000706 ORTHO05D001554 4.5e-10 69.3 61 44.3
FAN19G2540 Fragaria x ananassa HOM05D000706 ORTHO05D001554 5.9e-10 68.9 107 37.4
FAN23G1421 Fragaria x ananassa HOM05D000706 ORTHO05D001554 5.9e-10 68.9 103 37.9
EL10Ac4g09693 Beta vulgaris HOM05D000706 ORTHO05D001554 7.7e-10 68.6 104 36.5
Ciclev10026382m.g Citrus clementina HOM05D000706 ORTHO05D001554 7.7e-10 68.6 111 33.3
Medtr3g064270 Medicago truncatula HOM05D000706 ORTHO05D001554 7.7e-10 68.6 110 36.4
Nitab4.5_0000634g0010 Nicotiana tabacum HOM05D000706 ORTHO05D001554 7.7e-10 68.6 89 33.7
Thecc.02G012800 Theobroma cacao HOM05D000706 ORTHO05D001554 7.7e-10 68.6 87 39.1
Medtr3g064280 Medicago truncatula HOM05D000706 ORTHO05D001554 1.0e-09 68.2 88 43.2
Phvul.006G085500 Phaseolus vulgaris HOM05D000706 ORTHO05D012096 1.0e-09 68.2 110 35.5
GSVIVG01000269001 Vitis vinifera HOM05D000706 ORTHO05D001554 1.0e-09 68.2 88 33.0
PGR102G2630 Punica granatum HOM05D000706 ORTHO05D001554 1.3e-09 67.8 106 35.8
Lalb_Chr18g0053861 Lupinus albus HOM05D000706 ORTHO05D012096 1.7e-09 67.4 87 42.5
Solyc01g086950.4 Solanum lycopersicum HOM05D000706 ORTHO05D001554 1.7e-09 67.4 92 38.0
TPR.G23221 Trifolium pratense HOM05D000706 ORTHO05D001554 1.7e-09 67.4 99 36.4
GSVIVG01023170001 Vitis vinifera HOM05D000706 ORTHO05D012096 1.7e-09 67.4 75 37.3
Ca_09585_v3 Cicer arietinum L. HOM05D005973 ORTHO05D007285 2.2e-09 67.0 82 45.1
Migut.B01326 Erythranthe guttata HOM05D000706 ORTHO05D001554 2.2e-09 67.0 113 31.9
Cfa019817 Carpinus fangiana HOM05D000706 ORTHO05D001554 2.9e-09 66.6 100 36.0
Medtr3g064260 Medicago truncatula HOM05D000706 ORTHO05D001554 2.9e-09 66.6 110 37.3
Sopen01g033940 Solanum pennellii HOM05D000706 ORTHO05D001554 2.9e-09 66.6 96 37.5
Actinidia16541 Actinidia chinensis HOM05D000706 ORTHO05D001554 3.8e-09 66.2 100 36.0
CAN.G170.123 Capsicum annuum HOM05D000706 ORTHO05D001554 3.8e-09 66.2 91 38.5
Lj5A276G88 Lonicera japonica HOM05D017178 ORTHO05D012096 3.8e-09 66.2 85 42.4
Medtr3g064250 Medicago truncatula HOM05D000706 ORTHO05D001554 3.8e-09 66.2 90 41.1
Lj3P1070T22 Lonicera japonica HOM05D017178 ORTHO05D012096 5.0e-09 65.9 106 37.7
Medtr6g065790 Medicago truncatula HOM05D000706 ORTHO05D001554 5.0e-09 65.9 110 34.5
arahy.Tifrunner.gnm1.ann1.3KND2G Arachis hypogaea HOM05D000706 ORTHO05D001554 6.5e-09 65.5 100 39.0
CiPaw.06G001000 Carya illinoinensis HOM05D000706 ORTHO05D001554 6.5e-09 65.5 81 39.5
Thhalv10013270m.g Eutrema salsugineum HOM05D000706 ORTHO05D001554 6.5e-09 65.5 114 33.3
Gohir.D04G177400 Gossypium hirsutum HOM05D000706 ORTHO05D001554 6.5e-09 65.5 103 36.9
VMungo0540G0276 Vigna mungo HOM05D000706 ORTHO05D012096 6.5e-09 65.5 94 37.2
PGSC0003DMG400006879 Solanum tuberosum HOM05D000706 ORTHO05D001554 8.5e-09 65.1 92 37.0
Gorai.012G170300 Gossypium raimondii HOM05D000706 ORTHO05D001554 1.1e-08 64.7 103 36.9
PSO210G5296 Papaver somniferum HOM05D000706 ORTHO05D001554 1.1e-08 64.7 95 36.8
Peaxi162Scf00428g00822 Petunia axillaris HOM05D000706 ORTHO05D001554 1.1e-08 64.7 91 38.5
GSVIVG01023197001 Vitis vinifera HOM05D000706 ORTHO05D012096 1.1e-08 64.7 92 39.1
Cpa.g.sc86.38 Carica papaya HOM05D000706 ORTHO05D001554 1.4e-08 64.3 85 35.3
MD15G1140400 Malus domestica HOM05D000706 ORTHO05D001554 1.4e-08 64.3 86 36.0
Glyma.11G208500 Glycine max HOM05D000706 ORTHO05D001554 1.9e-08 63.9 90 37.8
Atru.chr4.14_Atru.chr4.15 Acer truncatum HOM05D000706 ORTHO05D001554 3.2e-08 63.2 110 33.6
BcaB07g31760 Brassica carinata HOM05D000706 ORTHO05D001633 3.2e-08 63.2 61 39.3
BcaC04g23016 Brassica carinata HOM05D000706 ORTHO05D001633 3.2e-08 63.2 61 39.3
A09p11010 Brassica napus HOM05D000706 ORTHO05D001633 3.2e-08 63.2 61 39.3
C09p13020 Brassica napus HOM05D000706 ORTHO05D001633 3.2e-08 63.2 61 39.3
BolC9t54195H Brassica oleracea HOM05D000706 ORTHO05D001633 3.2e-08 63.2 61 39.3
BraA09t36741Z Brassica rapa HOM05D000706 ORTHO05D001633 3.2e-08 63.2 61 39.3
Ah.03g136980 Amaranthus hybridus HOM05D000572 ORTHO05D000840 4.2e-08 62.8 83 41.0
CDE05G3431 Ceratophyllum demersum HOM05D000706 ORTHO05D001554 4.2e-08 62.8 96 31.2
Rhsim09G0000400 Rhododendron simsii HOM05D000706 ORTHO05D001554 4.2e-08 62.8 88 36.4
BcaB07g31768 Brassica carinata HOM05D000706 ORTHO05D001633 5.5e-08 62.4 56 41.1
BcaB07g31769 Brassica carinata HOM05D000706 ORTHO05D001633 5.5e-08 62.4 56 41.1
Lj3P665T11 Lonicera japonica HOM05D017178 ORTHO05D012096 5.5e-08 62.4 110 36.4
PSO447G0242 Papaver somniferum HOM05D000706 ORTHO05D001554 5.5e-08 62.4 113 33.6
RcHm_v2.0_Chr3g0484911 Rosa chinensis HOM05D000706 ORTHO05D001554 5.5e-08 62.4 109 32.1
PSO541G1600 Papaver somniferum HOM05D000706 ORTHO05D001554 7.2e-08 62.0 63 41.3
Lj2g0014541 Lotus japonicus HOM05D000706 ORTHO05D001554 9.4e-08 61.6 124 31.5
Medtr3g064290 Medicago truncatula HOM05D000706 ORTHO05D001554 9.4e-08 61.6 90 41.1
Sp3g29760 Schrenkiella parvula HOM05D000706 ORTHO05D001633 9.4e-08 61.6 61 39.3
Sc16g0009760 Simmondsia chinensis HOM05D000706 ORTHO05D001554 9.4e-08 61.6 96 37.5
AT5G08430 Arabidopsis thaliana HOM05D000706 ORTHO05D001554 1.2e-07 61.2 124 33.1
ClCG09G022930 Citrullus lanatus HOM05D000706 ORTHO05D001554 1.6e-07 60.8 85 35.3
MELO3C012577.2 Cucumis melo HOM05D000706 ORTHO05D001554 1.6e-07 60.8 99 30.3
CsaV3_7G023180 Cucumis sativus L. HOM05D000706 ORTHO05D001554 1.6e-07 60.8 87 33.3
Thhalv10016136m.g Eutrema salsugineum HOM05D000706 ORTHO05D001633 1.6e-07 60.8 61 39.3
TWI79G1627 Tripterygium wilfordii HOM05D000706 ORTHO05D001554 1.6e-07 60.8 81 33.3
Gohir.D02G153300 Gossypium hirsutum HOM05D000706 ORTHO05D001554 2.1e-07 60.5 93 31.2
Gorai.005G172400 Gossypium raimondii HOM05D000706 ORTHO05D001554 2.1e-07 60.5 93 31.2
PSO675G4911 Papaver somniferum HOM05D000706 ORTHO05D001554 2.1e-07 60.5 62 41.9
Prupe.4G286800 Prunus persica HOM05D000706 ORTHO05D001554 2.1e-07 60.5 86 32.6
Hund07199 Selenicereus undatus HOM05D000706 ORTHO05D001554 2.1e-07 60.5 98 32.7
THA.LOC104818393 Tarenaya hassleriana HOM05D000706 ORTHO05D001554 2.1e-07 60.5 92 33.7
HanXRQChr15g0471611 Helianthus annuus HOM05D000706 ORTHO05D001554 2.7e-07 60.1 83 41.0
AL3G52680 Arabidopsis lyrata HOM05D000706 ORTHO05D001633 3.6e-07 59.7 61 36.1
AL6G18900 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 3.6e-07 59.7 89 34.8
arahy.Tifrunner.gnm1.ann1.2RX12T Arachis hypogaea HOM05D000706 ORTHO05D001554 3.6e-07 59.7 100 37.0
CARHR204580 Cardamine hirsuta HOM05D000706 ORTHO05D001554 3.6e-07 59.7 89 37.1
AT2G16485 Arabidopsis thaliana HOM05D000706 ORTHO05D001633 4.6e-07 59.3 61 36.1
Carub.0003s3025 Capsella rubella HOM05D000706 ORTHO05D001633 4.6e-07 59.3 61 37.7
CARHR106710 Cardamine hirsuta HOM05D000706 ORTHO05D001633 4.6e-07 59.3 61 36.1
Pp3c15_12580 Physcomitrium patens HOM05D000706 ORTHO05D001633 4.6e-07 59.3 52 42.3
Pp3c15_12700 Physcomitrium patens HOM05D000706 ORTHO05D001633 4.6e-07 59.3 52 42.3
Aa31LG8G13810 Aethionema arabicum HOM05D000706 ORTHO05D001633 7.9e-07 58.5 57 36.8
MSTRG.16476 Avicennia marina HOM05D000706 ORTHO05D001554 7.9e-07 58.5 123 30.1
Lj5C190G5 Lonicera japonica HOM05D000706 ORTHO05D001633 7.9e-07 58.5 57 36.8
Psat1g116560 Pisum sativum HOM05D000706 ORTHO05D001554 7.9e-07 58.5 64 35.9
Cpa.g.c41117 Carica papaya HOM05D000706 ORTHO05D001633 1.0e-06 58.2 52 40.4
SHI08584 Sapria himalayana HOM05D000706 ORTHO05D001633 1.0e-06 58.2 107 28.0
CDE06G0276 Ceratophyllum demersum HOM05D000706 ORTHO05D001633 1.4e-06 57.8 58 39.7
Duzib264G0704 Durio zibethinus HOM05D000706 ORTHO05D001633 1.4e-06 57.8 58 34.5
Thhalv10001877m.g Eutrema salsugineum HOM05D000706 ORTHO05D001633 1.4e-06 57.8 61 37.7
HanXRQChr10g0285891 Helianthus annuus HOM05D000706 ORTHO05D001554 1.4e-06 57.8 103 32.0
Potri.007G016000 Populus trichocarpa HOM05D000706 ORTHO05D001633 1.4e-06 57.8 52 40.4
Ah.06g188410 Amaranthus hybridus HOM05D000706 ORTHO05D001554 1.8e-06 57.4 59 39.0
SGA_v2.0_scaffold167G38452 Striga asiatica HOM05D000706 ORTHO05D001554 1.8e-06 57.4 111 27.9
AL6G34760 Arabidopsis lyrata HOM05D000706 ORTHO05D001554 2.3e-06 57.0 104 32.7
arahy.Tifrunner.gnm1.ann1.FL369X Arachis hypogaea HOM05D000706 ORTHO05D001633 2.3e-06 57.0 62 33.9
arahy.Tifrunner.gnm1.ann1.MSJ6DP Arachis hypogaea HOM05D000706 ORTHO05D001633 2.3e-06 57.0 62 33.9
Eucgr.H05064 Eucalyptus grandis HOM05D000706 ORTHO05D001554 2.3e-06 57.0 99 31.3
Nitab4.5_0000023g0120 Nicotiana tabacum HOM05D000706 ORTHO05D001633 2.3e-06 57.0 57 38.6
Lj1g0002727 Lotus japonicus HOM05D000706 ORTHO05D001633 3.0e-06 56.6 57 36.8
Nitab4.5_0002026g0060 Nicotiana tabacum HOM05D000001 ORTHO05D000003 3.0e-06 56.6 52 40.4
Phvul.004G133700 Phaseolus vulgaris HOM05D000706 ORTHO05D001554 3.0e-06 56.6 76 34.2
Sabra05G0096300 Salix brachista HOM05D000706 ORTHO05D001633 3.0e-06 56.6 63 36.5
TAR636G1687 Trochodendron aralioides HOM05D000325 ORTHO05D012096 3.0e-06 56.6 94 33.0
Ah.02g124660 Amaranthus hybridus HOM05D000706 ORTHO05D001633 3.9e-06 56.2 53 39.6
Aqoxy5G01350_Aqoxy5G01351 Aquilegia oxysepala HOM05D000706 ORTHO05D001554 3.9e-06 56.2 84 35.7
BcaC03g13230 Brassica carinata HOM05D000706 ORTHO05D001554 3.9e-06 56.2 112 30.4
Carub.0006s0735 Capsella rubella HOM05D000706 ORTHO05D001554 3.9e-06 56.2 89 33.7
COL.COLO4_21963 Corchorus olitorius HOM05D000706 ORTHO05D001633 3.9e-06 56.2 57 33.3
Sabra07G0013200 Salix brachista HOM05D000706 ORTHO05D001633 3.9e-06 56.2 52 38.5
Glyma.16G208800 Glycine max HOM05D000706 ORTHO05D001554 5.1e-06 55.8 60 36.7
Lj3P240T17 Lonicera japonica HOM05D017178 ORTHO05D012096 5.1e-06 55.8 88 36.4
Ah.03g141560 Amaranthus hybridus HOM05D000706 ORTHO05D001633 6.7e-06 55.5 53 37.7
A02p40950 Brassica napus HOM05D000706 ORTHO05D001554 6.7e-06 55.5 83 38.6
BraA02t09041Z Brassica rapa HOM05D000706 ORTHO05D001554 6.7e-06 55.5 83 38.6
CiPaw.14G035600 Carya illinoinensis HOM05D000706 ORTHO05D001633 6.7e-06 55.5 57 33.3
Eucgr.G01725 Eucalyptus grandis HOM05D000706 ORTHO05D001633 6.7e-06 55.5 57 35.1
Potri.005G117300 Populus trichocarpa HOM05D000706 ORTHO05D001633 6.7e-06 55.5 52 38.5
PGR042G1088 Punica granatum HOM05D000706 ORTHO05D001633 6.7e-06 55.5 57 35.1
TPR.G32171 Trifolium pratense HOM05D000706 ORTHO05D001633 6.7e-06 55.5 57 35.1
Zm00001eb349090 Zea mays HOM05D000706 ORTHO05D001554 6.7e-06 55.5 70 32.9
CBR_g54814 Chara braunii HOM05D000706 ORTHO05D000353 8.8e-06 55.1 51 41.2
AUR62000570 Chenopodium quinoa HOM05D000706 ORTHO05D001554 8.8e-06 55.1 59 37.3
Duzib248G0445 Durio zibethinus HOM05D000706 ORTHO05D001633 8.8e-06 55.1 57 35.1
Lj2g0017487 Lotus japonicus HOM05D000706 ORTHO05D001633 8.8e-06 55.1 64 34.4
MD02G1135700 Malus domestica HOM05D000706 ORTHO05D001633 8.8e-06 55.1 52 34.6
Nitab4.5_0000492g0090 Nicotiana tabacum HOM05D000706 ORTHO05D001633 8.8e-06 55.1 52 38.5
Thecc.02G076000 Theobroma cacao HOM05D000706 ORTHO05D001633 8.8e-06 55.1 57 35.1


User provided reference genes

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