Gene: Pp3c15_12580
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c15_12580
- Transcript Identifier Pp3c15_12580V3.2
- Gene Type Coding gene
- Location Chr15 : 8309534-8314101 : positive
Gene Family Information
- ID HOM05D000706
- #Genes/#Species 813/97
- Phylogenetic origin
- ID ORTHO05D001633
- #Genes/#Species 378/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- name Pp3c15_12580V3.2
- pacid 32926943
- uniprot A0A2K1JCY8
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010964 | ISO | PLAZA Integrative Orthology | regulation of heterochromatin assembly by small RNA | AT2G16485 |
| GO:0032776 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine | AT2G16485 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0046872 | IEA | InterPro | metal ion binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0003677 | IEA | GOA Database | DNA binding | |
| GO:1990269 | IBA | GOA Database | RNA polymerase II C-terminal domain phosphoserine binding | |
| GO:0042393 | ISO | PLAZA Integrative Orthology | histone binding | AT2G16485 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016593 | IBA | GOA Database | Cdc73/Paf1 complex | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G16485 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G16485 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036855 | Zinc finger, CCCH-type superfamily |
| IPR036885 | SWIB/MDM2 domain superfamily |
| IPR003169 | GYF domain |
| IPR001965 | Zinc finger, PHD-type |
| IPR035445 | GYF-like domain superfamily |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR000571 | Zinc finger, CCCH-type |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| Mapman id | Description |
|---|---|
| 12.5.1.15.1 | Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.protein factor (NERD) |