Gene: Nitab4.5_0000492g0090
General Information
Structural Information
- Species Nicotiana tabacum
- Gene Identifier Nitab4.5_0000492g0090
- Transcript Identifier Nitab4.5_0000492g0090.1
- Gene Type Coding gene
- Location Nitab4.5_0000492 : 466719-481683 : positive
Gene Family Information
- ID HOM05D000706
- #Genes/#Species 813/97
- Phylogenetic origin
- ID ORTHO05D001633
- #Genes/#Species 378/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Nitab4.5_0000492g0090.1
- SR1-identifier Nta14g02130.1
Descriptions
- Description Pentatricopeptide repeat, SWIB/MDM2 domain, Zinc finger, FYVE/PHD-type, GYF, Plus-3, Zinc finger, RING/FYVE/PHD-type, SWIB domain, Zinc finger, PHD-type, conserved site, Zinc finger, PHD-type, Zinc finger, PHD-finger, Plus-3 domain, subgroup, Tetratricopeptide-like helical
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0010964 | ISO | PLAZA Integrative Orthology | regulation of heterochromatin assembly by small RNA | AT2G16485 |
| GO:0032776 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine | AT2G16485 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003677 | IEA | InterPro | DNA binding | |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0042393 | ISO | PLAZA Integrative Orthology | histone binding | AT2G16485 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT2G16485 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT2G16485 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR036128 | Plus3-like superfamily |
| IPR002885 | Pentatricopeptide repeat |
| IPR004343 | Plus-3 domain |
| IPR001965 | Zinc finger, PHD-type |
| IPR003169 | GYF domain |
| IPR035445 | GYF-like domain superfamily |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR036885 | SWIB/MDM2 domain superfamily |
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR003121 | SWIB/MDM2 domain |
| IPR019835 | SWIB domain |
| IPR011011 | Zinc finger, FYVE/PHD-type |
| Mapman id | Description |
|---|---|
| 12.5.1.15.1 | Chromatin organisation.DNA methylation.RNA-directed DNA methylation (RdDM) pathway.non-canonical RdDM pathway.protein factor (NERD) |
| 16.11.3.3.4.1 | RNA processing.organelle machinery.RNA modification.C-to-U RNA editing.PPR-type RNA editing factor activities.RNA editing factor (SLO1) |