Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026614 Sechium edule HOM05D005087 ORTHO05D006427 0.0e+00 1804.6 946 100.0
CsaV3_7G030750 Cucumis sativus L. HOM05D005087 ORTHO05D006427 0.0e+00 1668.3 945 92.0
MELO3C023581.2 Cucumis melo HOM05D005087 ORTHO05D006427 0.0e+00 1662.9 945 91.3
ClCG09G004390 Citrullus lanatus HOM05D005087 ORTHO05D006427 0.0e+00 1589.7 945 89.1
CiPaw.14G002700 Carya illinoinensis HOM05D005087 ORTHO05D006427 0.0e+00 1336.2 945 73.9
QL04p009808 Quercus lobata HOM05D005087 ORTHO05D006427 0.0e+00 1334.7 944 73.2
CSS0029256 Camellia sinensis var. sinensis HOM05D005087 ORTHO05D006427 0.0e+00 1319.7 945 72.8
Prupe.2G022000 Prunus persica HOM05D005087 ORTHO05D006427 0.0e+00 1318.9 946 72.3
Atru.chr11.2578 Acer truncatum HOM05D005087 ORTHO05D006427 0.0e+00 1315.4 946 71.6
GSVIVG01032195001 Vitis vinifera HOM05D005087 ORTHO05D006427 0.0e+00 1313.9 945 72.6
TAR623G1255 Trochodendron aralioides HOM05D005087 ORTHO05D006427 0.0e+00 1311.2 947 72.2
Cpa.g.sc125.40 Carica papaya HOM05D005087 ORTHO05D006427 0.0e+00 1303.9 946 71.4
Cfa022636 Carpinus fangiana HOM05D005087 ORTHO05D006427 0.0e+00 1286.2 935 73.2
Haze_03133 Corylus avellana HOM05D005087 ORTHO05D006427 0.0e+00 1272.7 1009 68.0
Haze_03136 Corylus avellana HOM05D005087 ORTHO05D006427 0.0e+00 1272.7 1009 68.0
Potri.001G262600 Populus trichocarpa HOM05D005087 ORTHO05D006427 0.0e+00 1271.1 945 69.8
Thecc.05G218700 Theobroma cacao HOM05D005087 ORTHO05D006427 0.0e+00 1270.0 945 69.5
Lj9C640G8 Lonicera japonica HOM05D005087 ORTHO05D006427 0.0e+00 1266.1 942 69.3
Manes.10G136400 Manihot esculenta HOM05D005087 ORTHO05D006427 0.0e+00 1263.8 941 69.5
Nn7g36293 Nelumbo nucifera HOM05D005087 ORTHO05D006427 0.0e+00 1250.7 942 69.6
Duzib177G0717 Durio zibethinus HOM05D005087 ORTHO05D006427 0.0e+00 1241.5 947 67.9
MD07G1021900 Malus domestica HOM05D005087 ORTHO05D006427 0.0e+00 1235.7 941 68.9
Dinv09311 Davidia involucrata HOM05D005087 ORTHO05D006427 0.0e+00 1234.9 926 70.3
TWI09G0473 Tripterygium wilfordii HOM05D005087 ORTHO05D006427 0.0e+00 1233.0 938 68.8
RcHm_v2.0_Chr1g0317911 Rosa chinensis HOM05D005087 ORTHO05D006427 0.0e+00 1226.8 946 67.9
Eucgr.G03334 Eucalyptus grandis HOM05D005087 ORTHO05D006427 0.0e+00 1220.7 942 67.2
Thhalv10012535m.g Eutrema salsugineum HOM05D005087 ORTHO05D006427 0.0e+00 1218.8 944 67.2
THA.LOC104819098 Tarenaya hassleriana HOM05D005087 ORTHO05D006427 0.0e+00 1218.8 944 67.2
AL6G26800 Arabidopsis lyrata HOM05D005087 ORTHO05D006427 0.0e+00 1210.7 944 66.1
Rhsim01G0127000 Rhododendron simsii HOM05D005087 ORTHO05D006427 0.0e+00 1206.0 947 66.2
Ciclev10030582m.g Citrus clementina HOM05D005087 ORTHO05D006427 0.0e+00 1199.5 945 67.6
MSTRG.17010 Avicennia marina HOM05D005087 ORTHO05D006427 0.0e+00 1199.1 945 65.7
Carub.0006s1411 Capsella rubella HOM05D005087 ORTHO05D006427 0.0e+00 1195.6 944 66.1
Aa31LG11G13680 Aethionema arabicum HOM05D005087 ORTHO05D006427 0.0e+00 1191.8 969 64.9
Aqoxy1G00327 Aquilegia oxysepala HOM05D005087 ORTHO05D006427 0.0e+00 1187.2 937 65.2
AT5G15920 Arabidopsis thaliana HOM05D005087 ORTHO05D006427 0.0e+00 1186.0 935 66.2
FvH4_7g01640 Fragaria vesca HOM05D005087 ORTHO05D006427 0.0e+00 1179.9 947 65.4
Gohir.D13G161900 Gossypium hirsutum HOM05D005087 ORTHO05D006427 0.0e+00 1179.1 937 65.8
Gorai.013G183900 Gossypium raimondii HOM05D005087 ORTHO05D006427 0.0e+00 1179.1 937 66.0
SGA_v2.0_scaffold119G32758 Striga asiatica HOM05D005087 ORTHO05D006427 0.0e+00 1174.1 964 64.1
Peaxi162Scf00694g00319 Petunia axillaris HOM05D005087 ORTHO05D006427 0.0e+00 1169.8 972 62.9
FAN06G3789 Fragaria x ananassa HOM05D005087 ORTHO05D006427 0.0e+00 1169.5 959 64.4
HanXRQChr01g0007751 Helianthus annuus HOM05D005087 ORTHO05D006427 0.0e+00 1168.3 943 63.0
Lj3g0015731 Lotus japonicus HOM05D005087 ORTHO05D006427 0.0e+00 1168.3 946 64.3
BraA03t10076Z Brassica rapa HOM05D005087 ORTHO05D006427 0.0e+00 1167.5 936 64.5
Phvul.002G285500 Phaseolus vulgaris HOM05D005087 ORTHO05D006427 0.0e+00 1166.0 946 64.7
CARHR197390 Cardamine hirsuta HOM05D005087 ORTHO05D006427 0.0e+00 1165.2 944 64.8
A03p07470 Brassica napus HOM05D005087 ORTHO05D006427 0.0e+00 1164.8 936 64.9
Glyma.20G198300 Glycine max HOM05D005087 ORTHO05D006427 0.0e+00 1160.6 945 64.7
Medtr4g115050 Medicago truncatula HOM05D005087 ORTHO05D006427 0.0e+00 1159.8 945 64.2
Migut.B01270 Erythranthe guttata HOM05D005087 ORTHO05D006427 0.0e+00 1157.1 945 63.2
Gohir.A13G157100 Gossypium hirsutum HOM05D005087 ORTHO05D006427 0.0e+00 1154.4 937 65.3
SalBow5G2001 Salvia bowleyana HOM05D005087 ORTHO05D006427 0.0e+00 1147.5 945 62.4
SalBow5G0870 Salvia bowleyana HOM05D005087 ORTHO05D006427 0.0e+00 1147.1 945 62.4
FAN03G0563 Fragaria x ananassa HOM05D005087 ORTHO05D006427 0.0e+00 1145.6 947 64.1
Medtr3g033470 Medicago truncatula HOM05D005087 ORTHO05D006427 0.0e+00 1142.1 945 63.5
Cc02_g28540 Coffea canephora HOM05D005087 ORTHO05D006427 0.0e+00 1141.7 930 62.8
Solyc01g087720.4 Solanum lycopersicum HOM05D005087 ORTHO05D006427 0.0e+00 1137.9 936 64.0
Ca_14518_v3 Cicer arietinum L. HOM05D005087 ORTHO05D006427 0.0e+00 1136.7 945 63.0
CDE09G1121 Ceratophyllum demersum HOM05D005087 ORTHO05D006427 0.0e+00 1136.3 970 62.6
Psat6g018320 Pisum sativum HOM05D005087 ORTHO05D006427 0.0e+00 1134.4 945 63.4
Sopen01g034670 Solanum pennellii HOM05D005087 ORTHO05D006427 0.0e+00 1132.9 936 64.0
BcaB01g05014 Brassica carinata HOM05D005087 ORTHO05D006427 0.0e+00 1125.9 937 63.1
PSO339G3397 Papaver somniferum HOM05D005087 ORTHO05D006427 0.0e+00 1125.9 942 63.2
Lalb_Chr04g0263871 Lupinus albus HOM05D005087 ORTHO05D006427 0.0e+00 1124.0 945 62.0
Sabra16G0161000 Salix brachista HOM05D005087 ORTHO05D006427 0.0e+00 1117.8 932 64.6
VMungo0251G2588 Vigna mungo HOM05D005087 ORTHO05D006427 0.0e+00 1109.0 911 63.4
Lsat_1_v5_gn_1_103161 Lactuca sativa HOM05D005087 ORTHO05D006427 0.0e+00 1106.3 924 63.0
PGR031G1517 Punica granatum HOM05D005087 ORTHO05D006427 0.0e+00 1104.7 933 62.1
TPR.G14572 Trifolium pratense HOM05D005087 ORTHO05D006427 0.0e+00 1103.6 981 59.7
Sp6g28190 Schrenkiella parvula HOM05D005087 ORTHO05D006427 0.0e+00 1102.8 944 62.1
C03p08670 Brassica napus HOM05D005087 ORTHO05D006427 0.0e+00 1100.9 936 62.5
BolC3t13367H Brassica oleracea HOM05D005087 ORTHO05D006427 0.0e+00 1100.9 936 62.5
Hund09863 Selenicereus undatus HOM05D005087 ORTHO05D006427 0.0e+00 1095.9 931 62.0
FAN10G1149 Fragaria x ananassa HOM05D005087 ORTHO05D006427 0.0e+00 1095.1 988 61.0
DCAR_029700 Daucus carota HOM05D005087 ORTHO05D006427 0.0e+00 1093.2 939 60.5
CANSAT80G0443 Cannabis sativa HOM05D005087 ORTHO05D006427 0.0e+00 1086.6 932 61.2
Lju99A9T21 Lonicera japonica HOM05D005087 ORTHO05D006427 0.0e+00 1078.5 946 61.2
ECA248G2604 Erigeron canadensis HOM05D005087 ORTHO05D006427 1.4e-309 1066.2 943 59.0
SEGI_29436 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 3.6e-305 1051.6 939 57.5
Os05g0596600 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 1.2e-303 1046.6 940 58.6
ATR0626G229 Amborella trichopoda HOM05D005087 ORTHO05D006427 1.0e-299 1033.5 865 62.9
PSO210G7144 Papaver somniferum HOM05D005087 ORTHO05D006427 5.1e-299 1031.2 941 58.9
EL10Ac2g04365 Beta vulgaris HOM05D005087 ORTHO05D006427 7.1e-285 984.2 955 56.5
arahy.Tifrunner.gnm1.ann1.JJ1LEU Arachis hypogaea HOM05D005087 ORTHO05D006427 1.0e-283 980.3 927 56.6
AUR62023092 Chenopodium quinoa HOM05D005087 ORTHO05D006427 5.1e-283 978.0 910 57.7
arahy.Tifrunner.gnm1.ann1.1A5L99 Arachis hypogaea HOM05D005087 ORTHO05D006427 2.8e-281 972.2 916 56.6
Nitab4.5_0002388g0080 Nicotiana tabacum HOM05D005087 ORTHO05D006427 5.8e-279 964.5 831 59.9
Medtr5g036370 Medicago truncatula HOM05D005087 ORTHO05D006427 2.9e-278 962.2 945 56.0
Actinidia21541 Actinidia chinensis HOM05D005087 ORTHO05D006427 3.0e-275 952.2 748 67.4
AUR62009415 Chenopodium quinoa HOM05D005087 ORTHO05D006427 7.1e-269 931.0 890 56.9
Sc10g0000340 Simmondsia chinensis HOM05D005087 ORTHO05D006427 9.3e-269 930.6 837 58.9
Lj3g0013327 Lotus japonicus HOM05D005087 ORTHO05D006427 4.3e-266 921.8 945 53.8
Nitab4.5_0000707g0070 Nicotiana tabacum HOM05D005087 ORTHO05D006427 8.8e-243 844.3 820 56.3
Hma1.2p1_0685F.1_g203140 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 9.1e-240 834.3 645 66.5
CAN.G219.75 Capsicum annuum HOM05D005087 ORTHO05D006427 2.1e-236 823.2 739 58.5
MBI11_g23277_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 2.4e-232 809.7 730 59.9
Pp3c24_4940 Physcomitrium patens HOM05D005087 ORTHO05D006427 1.6e-231 807.0 943 46.6
SMO143G0265 Selaginella moellendorffii HOM05D005087 ORTHO05D006427 1.6e-231 807.0 933 46.9
Mapoly0007s0066 Marchantia polymorpha HOM05D005087 ORTHO05D006427 5.0e-214 748.8 926 45.1
SGA_v2.0_scaffold42G16189 Striga asiatica HOM05D005087 ORTHO05D006427 1.5e-213 747.3 679 57.6
Hma1.2p1_0685F.1_g203130 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 2.6e-210 736.5 555 67.4
vmacro21195 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 4.3e-205 719.2 925 47.1
Oeu049480.1 Olea europaea HOM05D005087 ORTHO05D006427 9.2e-192 674.9 781 49.8
CBR_g88572 Chara braunii HOM05D005087 ORTHO05D000002 2.7e-191 673.3 916 41.6
AagrBONN_evm.TU.Sc2ySwM_344.2054 Anthoceros agrestis HOM05D005087 ORTHO05D006427 9.3e-168 595.1 805 42.7
Zm00001eb225540 Zea mays HOM05D005087 ORTHO05D006427 8.2e-156 555.4 556 51.3
HPP92_016894 Vanilla planifolia HOM05D005087 ORTHO05D006427 1.3e-153 548.1 639 48.7
SHI04082 Sapria himalayana HOM05D005087 ORTHO05D006427 2.2e-148 530.8 483 60.2
unitig_22.g5432 Utricularia gibba HOM05D005087 ORTHO05D006427 2.1e-135 487.6 490 52.0
Hma1.2p1_0685F.1_g203150 Hydrangea macrophylla HOM05D005087 ORTHO05D006427 1.6e-114 418.3 273 76.6
Medtr5g036330 Medicago truncatula HOM05D005087 ORTHO05D006427 7.5e-101 372.9 242 74.8
SEGI_04619 Sequoiadendron giganteum HOM05D005087 ORTHO05D006427 1.6e-95 355.1 233 74.7
SEGI_40819 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 2.8e-95 354.4 334 56.3
PRCOL_00002930 Prasinoderma coloniale HOM05D005087 ORTHO05D006427 2.6e-93 347.8 970 29.7
Actinidia21540 Actinidia chinensis HOM05D005087 ORTHO05D006427 1.1e-86 325.9 183 83.6
MCO04G035 Micromonas commoda HOM05D005087 ORTHO05D006427 8.9e-86 322.8 972 29.5
Cre10.g440200 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 9.2e-83 312.8 942 29.2
SHI04084 Sapria himalayana HOM05D005087 ORTHO05D006427 2.8e-79 301.2 221 71.5
PSO384G1020 Papaver somniferum HOM05D005087 ORTHO05D006427 1.8e-78 298.5 169 85.2
Cre10.g440300 Chlamydomonas reinhardtii HOM05D005087 ORTHO05D006427 5.3e-62 243.8 930 27.6
SHI04083 Sapria himalayana HOM05D005087 ORTHO05D006427 8.7e-57 226.5 219 56.6
Cfa027028 Carpinus fangiana HOM05D005087 ORTHO05D006427 6.4e-52 210.3 972 24.6
Nitab4.5_0002388g0090 Nicotiana tabacum HOM05D005087 ORTHO05D006427 2.1e-50 205.3 107 91.6
Nitab4.5_0000707g0060 Nicotiana tabacum HOM05D005087 ORTHO05D006427 1.1e-40 172.9 96 82.3
HPP92_016892 Vanilla planifolia HOM05D001496 ORTHO05D007453 1.6e-39 169.1 117 69.2
Medtr5g036300 Medicago truncatula HOM05D005087 ORTHO05D006427 1.9e-35 155.6 124 68.5
vmacro17464 Vaccinium macrocarpon HOM05D005087 ORTHO05D006427 1.7e-31 142.5 117 61.5
unitig_22.g5433 Utricularia gibba HOM05D005087 ORTHO05D006427 1.8e-30 139.0 180 47.2
FAN01G1492 Fragaria x ananassa HOM05D005087 ORTHO05D006427 1.9e-19 102.4 55 78.2
HanXRQChr02g0047141 Helianthus annuus HOM05D005087 ORTHO05D038003 1.8e-17 95.9 80 57.5
PSO384G4905 Papaver somniferum HOM05D000635 ORTHO05D000488 2.3e-17 95.5 70 70.0
Actinidia13978 Actinidia chinensis HOM05D005087 ORTHO05D006427 1.7e-15 89.4 123 43.9
Actinidia20659 Actinidia chinensis HOM05D005087 ORTHO05D038003 6.3e-15 87.4 75 60.0
ClCG07G016820 Citrullus lanatus HOM05D004178 ORTHO05D005204 1.2e-13 83.2 981 22.2
CsaV3_4G004020 Cucumis sativus L. HOM05D004178 ORTHO05D005204 3.5e-13 81.6 975 21.4
CsaV3_7G030780 Cucumis sativus L. HOM05D000009 ORTHO05D000008 3.5e-13 81.6 47 83.0
TPR.G19974 Trifolium pratense HOM05D005087 ORTHO05D006427 2.9e-12 78.6 129 36.4
AT5G61460 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 1.1e-11 76.6 932 20.4
PSO063G1916 Papaver somniferum HOM05D004178 ORTHO05D005204 1.5e-11 76.3 976 20.3
Lsat_1_v5_gn_3_93400 Lactuca sativa HOM05D005087 ORTHO05D006427 3.2e-11 75.1 63 63.5
Aa31LG11G1940 Aethionema arabicum HOM05D004178 ORTHO05D005204 5.5e-11 74.3 960 21.4
Sed0013674 Sechium edule HOM05D004178 ORTHO05D005204 5.5e-11 74.3 981 21.4
QL09p005323 Quercus lobata HOM05D004178 ORTHO05D005204 1.6e-10 72.8 970 20.0
FAN01G0652 Fragaria x ananassa HOM05D004178 ORTHO05D005204 6.1e-10 70.9 978 21.6
AL8G38150 Arabidopsis lyrata HOM05D004178 ORTHO05D005204 1.0e-09 70.1 937 20.4
Lsat_1_v5_gn_4_32401 Lactuca sativa HOM05D000240 ORTHO05D001153 3.0e-09 68.6 56 62.5
CiPaw.03G020700 Carya illinoinensis HOM05D004178 ORTHO05D005204 4.0e-09 68.2 948 20.1
RcHm_v2.0_Chr1g0374131 Rosa chinensis HOM05D004178 ORTHO05D005204 4.0e-09 68.2 964 20.7
MELO3C017663.2 Cucumis melo HOM05D004178 ORTHO05D005204 6.7e-09 67.4 1020 20.7
Nn6g33950 Nelumbo nucifera HOM05D004178 ORTHO05D005204 6.7e-09 67.4 946 21.8
Carub.0008s2215 Capsella rubella HOM05D004178 ORTHO05D005204 2.6e-08 65.5 929 19.8
Os11g0577300 Oryza sativa ssp. japonica HOM05D005087 ORTHO05D006427 9.7e-08 63.5 180 28.3
PGR042G0822 Punica granatum HOM05D004178 ORTHO05D005204 1.3e-07 63.2 955 18.5
BcaC06g33151 Brassica carinata HOM05D004178 ORTHO05D005204 2.2e-07 62.4 944 20.9
Lj1C978G4 Lonicera japonica HOM05D004178 ORTHO05D005204 2.2e-07 62.4 951 21.0
Thecc.03G153700 Theobroma cacao HOM05D004178 ORTHO05D005204 2.8e-07 62.0 980 20.5
CARHR275220 Cardamine hirsuta HOM05D004178 ORTHO05D005204 3.7e-07 61.6 943 20.6
A03p47060 Brassica napus HOM05D004178 ORTHO05D005204 4.8e-07 61.2 952 19.9
BraA03t13829Z Brassica rapa HOM05D004178 ORTHO05D005204 4.8e-07 61.2 952 19.9
C07p45140 Brassica napus HOM05D004178 ORTHO05D005204 6.3e-07 60.8 949 20.2
Ciclev10004204m.g Citrus clementina HOM05D004178 ORTHO05D005204 6.3e-07 60.8 951 20.1
Carub.0006s0663 Capsella rubella HOM05D004178 ORTHO05D005204 1.1e-06 60.1 953 20.6
Hund11836 Selenicereus undatus HOM05D004178 ORTHO05D005204 1.1e-06 60.1 162 25.9
Manes.06G133600 Manihot esculenta HOM05D004178 ORTHO05D005204 1.8e-06 59.3 994 19.3
Peaxi162Scf00167g00610 Petunia axillaris HOM05D004178 ORTHO05D005204 1.8e-06 59.3 964 21.2
SMO364G0410 Selaginella moellendorffii HOM05D004178 ORTHO05D005204 1.8e-06 59.3 965 20.0
BcaC06g33236 Brassica carinata HOM05D004178 ORTHO05D005204 2.4e-06 58.9 953 20.6
BolC7t45036H Brassica oleracea HOM05D004178 ORTHO05D005204 2.4e-06 58.9 953 20.6
MBI11_g23279_MAGBIO Magnolia biondii HOM05D005087 ORTHO05D006427 2.4e-06 58.9 33 72.7
AT5G07660 Arabidopsis thaliana HOM05D004178 ORTHO05D005204 3.1e-06 58.5 956 19.6
Actinidia13583 Actinidia chinensis HOM05D004178 ORTHO05D005204 7.0e-06 57.4 965 20.1
Dinv06570 Davidia involucrata HOM05D004178 ORTHO05D005204 7.0e-06 57.4 945 19.8
Actinidia13977 Actinidia chinensis HOM05D005087 ORTHO05D006427 9.1e-06 57.0 280 25.4
Psat7g002800 Pisum sativum HOM05D005087 ORTHO05D006427 9.1e-06 57.0 86 43.0


User provided reference genes

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