Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026542 Sechium edule HOM05D006776 ORTHO05D007603 5.9e-302 1040.0 513 100.0
ClCG08G016470 Citrullus lanatus HOM05D006776 ORTHO05D007603 2.5e-244 848.6 465 89.5
CsaV3_2G026140 Cucumis sativus L. HOM05D006776 ORTHO05D007603 2.5e-236 822.0 432 92.1
MELO3C010806.2 Cucumis melo HOM05D006776 ORTHO05D007603 6.9e-234 813.9 438 90.9
GSVIVG01009344001 Vitis vinifera HOM05D006776 ORTHO05D007603 1.3e-200 703.4 438 78.8
Prupe.1G422900 Prunus persica HOM05D006776 ORTHO05D007603 3.8e-200 701.8 436 78.9
Actinidia08248 Actinidia chinensis HOM05D006776 ORTHO05D007603 1.9e-199 699.5 445 74.8
Cpa.g.sc142.25 Carica papaya HOM05D006776 ORTHO05D007603 3.2e-199 698.7 431 77.0
MD15G1070100 Malus domestica HOM05D006776 ORTHO05D007603 7.2e-199 697.6 436 76.6
RcHm_v2.0_Chr6g0309581 Rosa chinensis HOM05D006776 ORTHO05D007603 8.0e-198 694.1 436 77.3
CiPaw.07G175000 Carya illinoinensis HOM05D006776 ORTHO05D007603 1.0e-197 693.7 430 78.6
Manes.05G181900 Manihot esculenta HOM05D006776 ORTHO05D007603 1.4e-197 693.3 431 77.5
COL.COLO4_28506 Corchorus olitorius HOM05D006776 ORTHO05D007603 3.0e-197 692.2 431 76.6
Dinv39223 Davidia involucrata HOM05D006776 ORTHO05D007603 3.0e-197 692.2 445 75.5
Thecc.08G088800 Theobroma cacao HOM05D006776 ORTHO05D007603 3.0e-197 692.2 435 76.6
Atru.chr13.832 Acer truncatum HOM05D006776 ORTHO05D007603 5.2e-197 691.4 436 75.9
Gohir.A05G210000 Gossypium hirsutum HOM05D006776 ORTHO05D007603 1.2e-196 690.3 440 76.1
Gohir.D05G213300 Gossypium hirsutum HOM05D006776 ORTHO05D007603 2.0e-196 689.5 440 76.4
CSS0038791 Camellia sinensis var. sinensis HOM05D006776 ORTHO05D007603 4.4e-196 688.3 438 75.1
FAN27G1522 Fragaria x ananassa HOM05D006776 ORTHO05D007603 2.8e-195 685.6 436 76.4
Ciclev10001152m.g Citrus clementina HOM05D006776 ORTHO05D007603 3.7e-195 685.3 430 75.6
FAN15G0723 Fragaria x ananassa HOM05D006776 ORTHO05D007603 6.3e-195 684.5 436 76.8
FAN20G0940 Fragaria x ananassa HOM05D006776 ORTHO05D007603 8.3e-195 684.1 436 76.4
FvH4_2g33100 Fragaria vesca HOM05D006776 ORTHO05D007603 1.8e-194 682.9 436 76.1
FAN24G3456 Fragaria x ananassa HOM05D006776 ORTHO05D007603 4.1e-194 681.8 436 75.9
Cc10_g05780 Coffea canephora HOM05D006776 ORTHO05D007603 1.2e-193 680.2 449 73.9
Rhsim07G0219900 Rhododendron simsii HOM05D006776 ORTHO05D007603 5.9e-193 677.9 443 74.3
QL12p038088 Quercus lobata HOM05D006776 ORTHO05D007603 6.5e-192 674.5 467 71.5
CANSAT21G2159 Cannabis sativa HOM05D006776 ORTHO05D007603 1.1e-191 673.7 431 75.6
TAR376G1186 Trochodendron aralioides HOM05D006776 ORTHO05D007603 1.6e-190 669.8 437 74.4
Potri.014G016100 Populus trichocarpa HOM05D006776 ORTHO05D007603 4.7e-190 668.3 434 75.1
arahy.Tifrunner.gnm1.ann1.YEFH3D Arachis hypogaea HOM05D006776 ORTHO05D007603 8.0e-190 667.5 435 73.3
Hma1.2p1_0819F.1_g223710 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 1.8e-189 666.4 437 73.9
arahy.Tifrunner.gnm1.ann1.SBJ000 Arachis hypogaea HOM05D006776 ORTHO05D007603 2.0e-188 662.9 435 72.6
Nn1g04555 Nelumbo nucifera HOM05D006776 ORTHO05D007603 2.0e-188 662.9 431 73.3
PGR083G0271 Punica granatum HOM05D006776 ORTHO05D007603 3.4e-188 662.1 428 74.8
Cfa013778 Carpinus fangiana HOM05D006776 ORTHO05D007603 5.7e-188 661.4 431 75.4
PGSC0003DMG400011544 Solanum tuberosum HOM05D006776 ORTHO05D007603 6.3e-187 657.9 442 74.0
Nitab4.5_0008551g0030 Nicotiana tabacum HOM05D006776 ORTHO05D007603 1.1e-186 657.1 443 73.6
Nitab4.5_0002314g0100 Nicotiana tabacum HOM05D006776 ORTHO05D007603 5.4e-186 654.8 442 74.0
ECA232G1156 Erigeron canadensis HOM05D006776 ORTHO05D007603 9.1e-186 654.1 447 72.0
Gorai.009G219900 Gossypium raimondii HOM05D006776 ORTHO05D007603 2.0e-185 652.9 413 77.2
Lsat_1_v5_gn_4_131640 Lactuca sativa HOM05D006776 ORTHO05D007603 1.7e-184 649.8 444 71.2
EL10Ac1g02384 Beta vulgaris HOM05D006776 ORTHO05D007603 2.9e-184 649.0 444 70.5
Sopen12g030330 Solanum pennellii HOM05D006776 ORTHO05D007603 6.6e-184 647.9 442 73.1
Lj1g0026753 Lotus japonicus HOM05D006776 ORTHO05D007603 8.6e-184 647.5 435 71.0
TPR.G33723 Trifolium pratense HOM05D006776 ORTHO05D007603 8.6e-184 647.5 432 70.1
Oeu053611.1 Olea europaea HOM05D006776 ORTHO05D007603 1.9e-183 646.4 441 70.5
Solyc12g088340.2 Solanum lycopersicum HOM05D006776 ORTHO05D007603 1.9e-183 646.4 442 73.1
Glyma.04G045700 Glycine max HOM05D006776 ORTHO05D007603 2.5e-183 646.0 439 71.5
Phvul.009G071700 Phaseolus vulgaris HOM05D006776 ORTHO05D007603 3.3e-183 645.6 433 71.1
Medtr3g103170 Medicago truncatula HOM05D006776 ORTHO05D007603 4.2e-183 645.2 434 70.5
Eucgr.F00083 Eucalyptus grandis HOM05D006776 ORTHO05D007603 7.2e-183 644.4 430 73.7
PSO170G0170 Papaver somniferum HOM05D006776 ORTHO05D007603 7.2e-183 644.4 433 71.6
VMungo1309G0963 Vigna mungo HOM05D006776 ORTHO05D007603 9.5e-183 644.0 435 71.3
Lalb_Chr11g0062871 Lupinus albus HOM05D006776 ORTHO05D007603 1.6e-182 643.3 434 71.7
PSO017G0681 Papaver somniferum HOM05D006776 ORTHO05D007603 2.1e-182 642.9 433 71.4
Psat5g038960 Pisum sativum HOM05D006776 ORTHO05D007603 2.1e-182 642.9 429 70.9
MSTRG.22221 Avicennia marina HOM05D006776 ORTHO05D007603 3.6e-182 642.1 442 69.7
Hund23872 Selenicereus undatus HOM05D006776 ORTHO05D007603 3.6e-182 642.1 441 71.4
Sabra14G0010000 Salix brachista HOM05D006776 ORTHO05D007603 1.8e-181 639.8 416 74.5
THA.LOC104814190 Tarenaya hassleriana HOM05D006776 ORTHO05D007603 2.3e-181 639.4 440 71.8
Ca_15900_v3 Cicer arietinum L. HOM05D006776 ORTHO05D007603 6.8e-181 637.9 433 70.9
Aqoxy5G00870 Aquilegia oxysepala HOM05D006776 ORTHO05D007603 8.9e-181 637.5 446 70.2
Lj4A758G74 Lonicera japonica HOM05D006776 ORTHO05D007603 2.0e-180 636.3 418 74.4
Migut.N02781 Erythranthe guttata HOM05D006776 ORTHO05D007603 2.6e-180 636.0 437 70.3
Glyma.06G046400 Glycine max HOM05D006776 ORTHO05D007603 3.4e-180 635.6 435 70.8
TWI56G0429 Tripterygium wilfordii HOM05D006776 ORTHO05D007603 2.9e-179 632.5 430 71.6
HanXRQChr09g0266761 Helianthus annuus HOM05D006776 ORTHO05D007603 1.8e-178 629.8 449 68.8
SGA_v2.0_scaffold152G36804 Striga asiatica HOM05D006776 ORTHO05D007603 7.0e-178 627.9 496 63.3
Sp1g24040 Schrenkiella parvula HOM05D006776 ORTHO05D007603 1.2e-177 627.1 432 72.7
AT1G27840 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 5.0e-176 621.7 428 71.3
AL1G41330 Arabidopsis lyrata HOM05D006776 ORTHO05D007603 1.5e-175 620.2 435 70.1
DCAR_012816 Daucus carota HOM05D006776 ORTHO05D007603 5.6e-175 618.2 438 68.5
CARHR027300 Cardamine hirsuta HOM05D006776 ORTHO05D007603 6.2e-174 614.8 431 70.1
Haze_22436 Corylus avellana HOM05D006776 ORTHO05D007603 8.0e-174 614.4 382 78.5
BcaNung06155 Brassica carinata HOM05D006776 ORTHO05D007603 3.1e-173 612.5 438 70.3
Ah.11g042830 Amaranthus hybridus HOM05D006776 ORTHO05D007603 4.0e-173 612.1 431 68.2
A09p38320 Brassica napus HOM05D006776 ORTHO05D007603 4.9e-171 605.1 433 70.0
C05p26470 Brassica napus HOM05D006776 ORTHO05D007603 1.1e-170 604.0 433 69.5
BraA09t39342Z Brassica rapa HOM05D006776 ORTHO05D007603 5.4e-170 601.7 434 69.8
Aa31sc113G60 Aethionema arabicum HOM05D006776 ORTHO05D007603 1.2e-169 600.5 453 67.3
BolC5t31368H Brassica oleracea HOM05D006776 ORTHO05D007603 2.0e-169 599.7 433 69.5
Peaxi162Scf00160g00527 Petunia axillaris HOM05D006776 ORTHO05D007603 2.7e-169 599.4 423 72.6
Thhalv10007615m.g Eutrema salsugineum HOM05D006776 ORTHO05D007603 1.0e-168 597.4 414 72.5
HPP92_001976 Vanilla planifolia HOM05D006776 ORTHO05D007603 8.6e-168 594.3 432 65.7
Hma1.2p1_0819F.1_g223700 Hydrangea macrophylla HOM05D006776 ORTHO05D007603 5.6e-167 591.7 385 75.1
Sc15g0005690 Simmondsia chinensis HOM05D006776 ORTHO05D007603 1.6e-166 590.1 397 72.5
Duzib116G0586 Durio zibethinus HOM05D006776 ORTHO05D007603 2.8e-166 589.3 383 76.0
ATR0820G216 Amborella trichopoda HOM05D006776 ORTHO05D007603 1.1e-165 587.4 435 65.3
CDE04G2973 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 5.2e-165 585.1 431 66.8
unitig_578.g16149 Utricularia gibba HOM05D006776 ORTHO05D007603 1.7e-160 570.1 433 64.7
BcaNung06153 Brassica carinata HOM05D006776 ORTHO05D007603 2.3e-160 569.7 432 67.6
Zm00001eb147340 Zea mays HOM05D006776 ORTHO05D007603 6.6e-160 568.2 432 64.6
AUR62038776 Chenopodium quinoa HOM05D006776 ORTHO05D007603 3.6e-150 535.8 392 66.1
vmacro22055 Vaccinium macrocarpon HOM05D006776 ORTHO05D007603 1.6e-142 510.4 351 70.4
MD08G1082700 Malus domestica HOM05D006776 ORTHO05D007603 9.0e-133 478.0 371 65.5
Pp3c22_5850 Physcomitrium patens HOM05D006776 ORTHO05D007603 2.3e-128 463.4 434 51.4
Mapoly0043s0035 Marchantia polymorpha HOM05D006776 ORTHO05D007603 1.9e-127 460.3 430 53.0
BcaC05g26777 Brassica carinata HOM05D006776 ORTHO05D007603 5.3e-125 452.2 442 57.7
SMO203G0215 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 2.8e-118 429.9 432 49.8
AagrBONN_evm.TU.Sc2ySwM_228.2971 Anthoceros agrestis HOM05D006776 ORTHO05D007603 9.0e-117 424.9 424 49.3
AT1G19750 Arabidopsis thaliana HOM05D006776 ORTHO05D007603 6.5e-115 418.7 318 64.2
AUR62037473 Chenopodium quinoa HOM05D006776 ORTHO05D007603 6.3e-110 402.1 290 66.2
Carub.0001s2630 Capsella rubella HOM05D006776 ORTHO05D007603 1.1e-103 381.3 292 64.0
CBR_g4873 Chara braunii HOM05D006776 ORTHO05D007603 5.0e-99 365.9 476 39.9
CDE02G3909 Ceratophyllum demersum HOM05D006776 ORTHO05D007603 7.2e-98 362.1 379 50.9
SMO353G0131 Selaginella moellendorffii HOM05D006776 ORTHO05D007603 3.6e-89 333.2 437 42.8
MD08G1084000 Malus domestica HOM05D006776 ORTHO05D007603 1.5e-79 301.2 245 64.5
SEGI_38356 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 2.7e-73 280.4 197 66.5
SEGI_36074 Sequoiadendron giganteum HOM05D006776 ORTHO05D007603 3.1e-69 266.9 222 57.2
MCO02G266 Micromonas commoda HOM05D006776 ORTHO05D007603 2.9e-67 260.4 446 36.1
Os02g0307200 Oryza sativa ssp. japonica HOM05D006776 ORTHO05D007603 3.0e-64 250.4 190 64.2
Cre01.g032100 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 4.9e-38 163.3 281 34.2
PRCOL_00002749 Prasinoderma coloniale HOM05D006776 ORTHO05D007603 4.1e-37 160.2 463 27.6
Lsat_1_v5_gn_7_88960 Lactuca sativa HOM05D006776 ORTHO05D007603 9.6e-34 149.1 107 70.1
Cre01.g032139 Chlamydomonas reinhardtii HOM05D006776 ORTHO05D007603 5.4e-21 106.7 122 42.6
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 3.0e-11 74.3 328 22.9
Cc04_g10820 Coffea canephora HOM05D000464 ORTHO05D006292 4.3e-10 70.5 334 22.5
SGA_v2.0_scaffold7G04174 Striga asiatica HOM05D000464 ORTHO05D006292 5.6e-10 70.1 396 21.7
Migut.D02035 Erythranthe guttata HOM05D000464 ORTHO05D006292 7.4e-10 69.7 325 22.5
AL8G24250 Arabidopsis lyrata HOM05D000464 ORTHO05D006292 2.1e-09 68.2 330 21.5
Thhalv10013321m.g Eutrema salsugineum HOM05D000464 ORTHO05D006292 3.7e-09 67.4 330 21.2
Carub.0008s1023 Capsella rubella HOM05D000464 ORTHO05D006292 4.8e-09 67.0 330 21.2
AT5G50230 Arabidopsis thaliana HOM05D000464 ORTHO05D006292 8.2e-09 66.2 330 20.9
Psat5g117120 Pisum sativum HOM05D000464 ORTHO05D006292 1.4e-08 65.5 322 20.2
COL.COLO4_04956 Corchorus olitorius HOM05D000464 ORTHO05D006292 1.8e-08 65.1 178 27.0
Mapoly0020s0147 Marchantia polymorpha HOM05D006665 ORTHO05D008327 9.0e-08 62.8 360 24.2
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 2.0e-07 61.6 178 25.3
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 2.0e-07 61.6 178 25.3
Lj1g0006709 Lotus japonicus HOM05D000526 ORTHO05D000956 2.0e-07 61.6 248 23.4
Cpa.g.sc1360.1 Carica papaya HOM05D000464 ORTHO05D000408 2.6e-07 61.2 181 23.8
CsaV3_1G006540 Cucumis sativus L. HOM05D003769 ORTHO05D004521 3.4e-07 60.8 247 25.9
MBI10_g14637_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 3.4e-07 60.8 321 20.6
Medtr3g075400 Medicago truncatula HOM05D000464 ORTHO05D006292 3.4e-07 60.8 122 25.4
Zm00001eb160220 Zea mays HOM05D003769 ORTHO05D004521 3.4e-07 60.8 179 26.8
Os01g0575500 Oryza sativa ssp. japonica HOM05D003769 ORTHO05D004521 4.5e-07 60.5 179 26.3
TAR629G1181 Trochodendron aralioides HOM05D000464 ORTHO05D006292 4.5e-07 60.5 130 25.4
MELO3C002081.2 Cucumis melo HOM05D003769 ORTHO05D004521 5.8e-07 60.1 219 26.9
Hma1.2p1_1001F.1_g246600 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 5.8e-07 60.1 187 27.3
Hma1.2p1_1001F.1_g246610 Hydrangea macrophylla HOM05D003769 ORTHO05D004521 5.8e-07 60.1 187 27.3
Atru.chr9.806 Acer truncatum HOM05D003769 ORTHO05D004521 1.0e-06 59.3 242 24.0
DCAR_027817 Daucus carota HOM05D003769 ORTHO05D004521 1.0e-06 59.3 184 26.6
PSO063G1093 Papaver somniferum HOM05D000464 ORTHO05D006292 1.0e-06 59.3 325 19.7
Sp6g12330 Schrenkiella parvula HOM05D000464 ORTHO05D006292 1.0e-06 59.3 330 20.0
Aa31LG3G6060 Aethionema arabicum HOM05D000464 ORTHO05D006292 1.3e-06 58.9 126 25.4
Aqoxy3G01296 Aquilegia oxysepala HOM05D000464 ORTHO05D006292 1.3e-06 58.9 317 21.5
Lj3g0012644 Lotus japonicus HOM05D000526 ORTHO05D000956 1.3e-06 58.9 248 23.0
A08p30170 Brassica napus HOM05D001978 ORTHO05D003036 1.7e-06 58.5 198 25.3
BraA08t34951Z Brassica rapa HOM05D001978 ORTHO05D003036 1.7e-06 58.5 198 25.3
Sopen12g018840 Solanum pennellii HOM05D006809 ORTHO05D008609 2.2e-06 58.2 178 26.4
unitig_32.g11669 Utricularia gibba HOM05D000836 ORTHO05D000709 2.2e-06 58.2 146 26.7
CSS0000649 Camellia sinensis var. sinensis HOM05D003769 ORTHO05D004521 2.9e-06 57.8 172 26.2
Ciclev10018557m.g Citrus clementina HOM05D003769 ORTHO05D004521 2.9e-06 57.8 170 27.1
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 2.9e-06 57.8 170 25.3
MD14G1224200 Malus domestica HOM05D003769 ORTHO05D004521 2.9e-06 57.8 182 25.8
Thecc.03G031600 Theobroma cacao HOM05D003769 ORTHO05D004521 2.9e-06 57.8 195 25.6
Cc04_g07270 Coffea canephora HOM05D003769 ORTHO05D004521 3.8e-06 57.4 172 25.0
MD06G1213100 Malus domestica HOM05D003769 ORTHO05D004521 3.8e-06 57.4 182 25.8
BcaB07g33695 Brassica carinata HOM05D003769 ORTHO05D004521 4.9e-06 57.0 214 26.2
CARHR258380 Cardamine hirsuta HOM05D000464 ORTHO05D006292 4.9e-06 57.0 330 20.6
ClCG04G011640 Citrullus lanatus HOM05D006809 ORTHO05D000432 4.9e-06 57.0 193 24.9
ECA247G3798 Erigeron canadensis HOM05D000464 ORTHO05D006292 4.9e-06 57.0 312 20.8
ClCG04G011210 Citrullus lanatus HOM05D003769 ORTHO05D004521 6.5e-06 56.6 175 26.3
Os10g0464100 Oryza sativa ssp. japonica HOM05D006183 ORTHO05D007844 6.5e-06 56.6 412 23.5
GSVIVG01008260001 Vitis vinifera HOM05D003769 ORTHO05D004521 6.5e-06 56.6 195 25.6
EL10Ac5g11429 Beta vulgaris HOM05D003769 ORTHO05D004521 8.4e-06 56.2 181 27.6
COL.COLO4_14499 Corchorus olitorius HOM05D004758 ORTHO05D006063 8.4e-06 56.2 134 27.6
Haze_07749 Corylus avellana HOM05D006809 ORTHO05D008609 8.4e-06 56.2 176 23.9
FvH4_7g34000 Fragaria vesca HOM05D004758 ORTHO05D006063 8.4e-06 56.2 133 26.3
Nn4g23791 Nelumbo nucifera HOM05D003769 ORTHO05D004521 8.4e-06 56.2 184 26.6
SMO276G0027 Selaginella moellendorffii HOM05D000347 ORTHO05D001997 8.4e-06 56.2 168 25.6


User provided reference genes

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