Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 2.5e-206 721.8 366 100.0
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 8.5e-186 653.7 366 91.0
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 4.0e-183 644.8 370 89.7
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 6.8e-183 644.0 366 91.0
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 2.4e-156 555.8 367 76.0
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 9.2e-156 553.9 367 78.2
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.6e-155 553.1 358 76.8
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 2.7e-155 552.4 367 77.7
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 3.5e-155 552.0 366 76.2
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.0e-154 550.4 367 74.9
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.3e-154 550.1 383 74.2
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 2.3e-154 549.3 366 77.3
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.3e-154 549.3 366 76.8
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 8.6e-154 547.4 367 74.7
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.1e-153 547.0 366 76.5
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 1.9e-153 546.2 366 76.5
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 4.3e-153 545.0 366 76.2
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 4.3e-153 545.0 366 77.0
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 5.6e-153 544.7 367 75.2
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 2.8e-152 542.3 366 75.7
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 3.6e-152 542.0 366 76.0
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 1.1e-151 540.4 367 75.5
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 1.4e-151 540.0 366 76.0
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.3e-151 539.3 366 76.0
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.3e-151 539.3 366 76.0
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 2.0e-150 536.2 388 70.6
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 2.6e-150 535.8 377 74.0
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 4.4e-150 535.0 365 75.3
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 7.5e-150 534.3 366 74.6
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 6.4e-149 531.2 366 72.1
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.9e-148 529.6 366 73.0
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 1.9e-148 529.6 367 74.1
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.2e-148 528.9 368 73.9
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 4.1e-148 528.5 370 73.5
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 1.2e-147 526.9 366 72.1
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 2.1e-147 526.2 367 74.7
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.1e-147 526.2 366 72.4
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 2.7e-147 525.8 366 72.1
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 4.6e-147 525.0 367 74.1
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 6.0e-147 524.6 366 71.6
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 1.3e-146 523.5 367 74.1
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 3.9e-146 521.9 367 74.1
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 4.3e-145 518.5 368 72.3
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 4.3e-145 518.5 367 72.5
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 5.6e-145 518.1 365 74.2
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 2.8e-144 515.8 368 72.8
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.6e-144 515.4 369 73.2
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 6.2e-144 514.6 361 72.9
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.8e-143 513.1 367 72.5
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 1.8e-143 513.1 368 74.5
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 4.0e-143 511.9 367 73.3
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 4.0e-143 511.9 361 72.6
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 1.2e-142 510.4 367 72.5
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 1.5e-142 510.0 367 71.7
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 2.0e-142 509.6 367 73.0
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 2.6e-142 509.2 367 72.8
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 4.4e-142 508.4 365 72.3
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 8.4e-141 504.2 368 71.5
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 1.9e-140 503.1 366 69.7
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 3.2e-140 502.3 367 70.8
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 7.1e-140 501.1 366 71.0
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 2.7e-139 499.2 368 70.1
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 1.7e-138 496.5 371 69.0
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 8.6e-138 494.2 339 72.3
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.1e-137 493.8 308 79.5
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 2.5e-137 492.7 366 68.9
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 4.3e-137 491.9 349 71.6
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 3.1e-135 485.7 366 69.4
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 1.2e-134 483.8 366 69.9
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 2.6e-134 482.6 366 70.8
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 4.9e-133 478.4 369 69.1
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 1.7e-130 469.9 370 65.7
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.0e-130 469.2 368 69.0
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 3.9e-130 468.8 394 62.2
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 5.1e-130 468.4 366 66.7
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 3.3e-129 465.7 366 66.7
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 7.3e-129 464.5 367 67.0
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 9.6e-129 464.2 366 66.1
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 1.6e-128 463.4 368 67.1
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 8.1e-128 461.1 367 66.5
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 8.1e-128 461.1 366 66.7
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 1.8e-127 459.9 365 67.1
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 3.1e-127 459.1 359 67.1
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 4.0e-127 458.8 367 65.9
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 3.4e-126 455.7 366 64.5
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 4.4e-126 455.3 320 72.8
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 9.9e-126 454.1 366 65.0
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 2.9e-125 452.6 365 66.3
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 3.8e-125 452.2 392 62.2
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 1.2e-123 447.2 367 65.7
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 6.0e-123 444.9 374 65.0
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.0e-122 444.1 325 70.2
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 9.0e-119 431.0 367 61.0
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 7.1e-116 421.4 379 59.9
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.3e-114 417.2 304 72.0
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 6.2e-112 408.3 341 62.2
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 4.0e-111 405.6 361 58.2
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 5.3e-111 405.2 357 59.7
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 6.9e-111 404.8 366 62.0
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 1.7e-109 400.2 279 72.0
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 2.2e-109 399.8 364 58.5
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 4.9e-109 398.7 364 58.2
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 4.2e-108 395.6 368 58.7
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.4e-105 384.8 386 59.6
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 8.5e-101 371.3 386 52.1
Gohir.A12G078265 Gossypium hirsutum HOM05D005334 ORTHO05D006560 2.7e-99 366.3 245 76.7
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 3.2e-92 342.8 301 57.5
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 9.4e-84 314.7 366 45.9
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 6.7e-82 308.5 279 59.1
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 1.1e-81 307.8 372 45.7
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 4.1e-79 299.3 424 44.3
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.6e-78 297.4 215 67.4
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 2.0e-73 280.4 309 52.8
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 2.2e-72 276.9 370 48.4
TPR.G5292 Trifolium pratense HOM05D005334 ORTHO05D006560 3.8e-69 266.2 174 78.7
Lj2g0000099 Lotus japonicus HOM05D005334 ORTHO05D006560 1.4e-66 257.7 173 75.7
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 7.5e-65 251.9 200 66.5
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 6.3e-64 248.8 197 65.5
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 1.6e-62 244.2 214 60.3
BcaB06g25638 Brassica carinata HOM05D005334 ORTHO05D006560 5.0e-61 239.2 168 73.2
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 1.5e-52 211.1 161 67.7
CSS0046374 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.6e-49 200.3 119 83.2
CSS0016906 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 6.4e-48 195.7 119 81.5
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 7.8e-46 188.7 310 42.3
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 2.5e-44 183.7 201 51.2
MD01G1042700 Malus domestica HOM05D005334 ORTHO05D006560 2.5e-44 183.7 166 60.8
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 3.3e-44 183.3 145 68.3
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 3.1e-42 176.8 250 44.0
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 5.4e-39 166.0 142 63.4
CSS0017464 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 2.7e-38 163.7 119 71.4
ATR0022G031 Amborella trichopoda HOM05D005334 ORTHO05D006560 7.3e-36 155.6 134 62.7
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 7.1e-31 139.0 177 42.9
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 4.6e-30 136.3 142 55.6
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 3.3e-28 130.2 115 60.9
CSS0026696 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.1e-26 123.6 72 80.6
MBI03_g45376_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.9e-26 122.1 87 69.0
HPP92_008021 Vanilla planifolia HOM05D005334 ORTHO05D006560 4.6e-22 109.8 72 79.2
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 3.9e-21 106.7 395 24.1
MBI03_g46739_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 2.5e-20 104.0 77 64.9
CBR_g30786 Chara braunii HOM05D000019 ORTHO05D000002 7.6e-17 92.4 136 38.2
MCO12G220 Micromonas commoda HOM05D005334 ORTHO05D006560 3.5e-06 57.0 139 30.2


User provided reference genes

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