Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0025621 Sechium edule HOM05D004151 ORTHO05D004775 1.4e-78 296.6 188 100.0
CsaV3_4G013280 Cucumis sativus L. HOM05D004151 ORTHO05D004775 2.7e-58 229.2 163 82.2
MELO3C008801.2 Cucumis melo HOM05D004151 ORTHO05D004775 8.6e-57 224.2 169 82.2
Thecc.05G294500 Theobroma cacao HOM05D004151 ORTHO05D004775 1.5e-56 223.4 171 78.9
ClCG04G005310 Citrullus lanatus HOM05D004151 ORTHO05D004775 3.3e-56 222.2 177 79.7
Duzib106G1401 Durio zibethinus HOM05D004151 ORTHO05D004775 3.3e-56 222.2 171 78.4
RcHm_v2.0_Chr3g0490211 Rosa chinensis HOM05D004151 ORTHO05D004775 2.1e-55 219.5 153 84.3
Atru.chr5.2062 Acer truncatum HOM05D004151 ORTHO05D004775 2.8e-55 219.2 168 75.6
Glyma.16G041400 Glycine max HOM05D004151 ORTHO05D004775 2.8e-55 219.2 170 81.2
TWI32G1207 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 6.1e-55 218.0 176 76.1
TAR369G0512 Trochodendron aralioides HOM05D004151 ORTHO05D004775 2.3e-54 216.1 179 74.9
Atru.chr5.2060 Acer truncatum HOM05D004151 ORTHO05D004775 4.0e-54 215.3 168 75.0
GSVIVG01033401001 Vitis vinifera HOM05D004151 ORTHO05D004775 4.0e-54 215.3 168 73.8
Gohir.A11G296500 Gossypium hirsutum HOM05D004151 ORTHO05D004775 6.8e-54 214.5 140 87.9
CARHR194880 Cardamine hirsuta HOM05D004151 ORTHO05D004775 8.9e-54 214.2 168 80.4
Manes.08G144000 Manihot esculenta HOM05D004151 ORTHO05D004775 8.9e-54 214.2 169 78.7
Nitab4.5_0009048g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 1.2e-53 213.8 168 76.2
Duzib177G0709 Durio zibethinus HOM05D004151 ORTHO05D004775 2.6e-53 212.6 173 76.9
PGR142G1491 Punica granatum HOM05D004151 ORTHO05D004775 2.6e-53 212.6 168 79.8
FvH4_1g30320 Fragaria vesca HOM05D004151 ORTHO05D004775 3.4e-53 212.2 151 83.4
FAN19G1796 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.4e-53 212.2 151 84.1
FAN26G2823 Fragaria x ananassa HOM05D004151 ORTHO05D004775 3.4e-53 212.2 151 84.1
Glyma.19G110900 Glycine max HOM05D004151 ORTHO05D004775 3.4e-53 212.2 185 75.1
Gohir.A08G213200 Gossypium hirsutum HOM05D004151 ORTHO05D004775 3.4e-53 212.2 171 76.0
Manes.09G141400 Manihot esculenta HOM05D004151 ORTHO05D004775 3.4e-53 212.2 167 79.0
Oeu059999.1 Olea europaea HOM05D004151 ORTHO05D004775 4.4e-53 211.8 172 70.9
Gorai.004G244500 Gossypium raimondii HOM05D004151 ORTHO05D004775 5.7e-53 211.5 170 76.5
Gohir.D11G310400 Gossypium hirsutum HOM05D004151 ORTHO05D004775 7.5e-53 211.1 171 77.2
Gorai.007G343400 Gossypium raimondii HOM05D004151 ORTHO05D004775 7.5e-53 211.1 171 77.2
Hma1.2p1_0134F.1_g061640 Hydrangea macrophylla HOM05D004151 ORTHO05D004775 9.8e-53 210.7 159 79.9
Peaxi162Scf00003g04832 Petunia axillaris HOM05D004151 ORTHO05D004775 9.8e-53 210.7 148 75.7
Lj1g0021266 Lotus japonicus HOM05D004151 ORTHO05D004775 1.3e-52 210.3 182 71.4
Sed0023399 Sechium edule HOM05D004151 ORTHO05D004775 1.3e-52 210.3 174 78.7
FAN23G0170 Fragaria x ananassa HOM05D004151 ORTHO05D004775 1.7e-52 209.9 151 83.4
FAN28G2413 Fragaria x ananassa HOM05D004151 ORTHO05D004775 2.2e-52 209.5 134 88.8
Gohir.D08G230300 Gossypium hirsutum HOM05D004151 ORTHO05D004775 2.2e-52 209.5 170 75.9
Cc06_g22960 Coffea canephora HOM05D004151 ORTHO05D004775 2.9e-52 209.1 178 69.1
SGA_v2.0_scaffold274G46513 Striga asiatica HOM05D004151 ORTHO05D004775 2.9e-52 209.1 161 80.7
Thhalv10014755m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 3.7e-52 208.8 146 78.8
arahy.Tifrunner.gnm1.ann1.JDMG7B Arachis hypogaea HOM05D004151 ORTHO05D004775 4.9e-52 208.4 143 87.4
arahy.Tifrunner.gnm1.ann1.PLSY77 Arachis hypogaea HOM05D004151 ORTHO05D004775 4.9e-52 208.4 143 87.4
Nitab4.5_0007542g0010 Nicotiana tabacum HOM05D004151 ORTHO05D004775 4.9e-52 208.4 145 80.0
VMungo1383G2477 Vigna mungo HOM05D004151 ORTHO05D004775 4.9e-52 208.4 152 83.6
Lalb_Chr14g0364491 Lupinus albus HOM05D004151 ORTHO05D004775 6.4e-52 208.0 168 74.4
MD05G1045500 Malus domestica HOM05D004151 ORTHO05D004775 6.4e-52 208.0 181 70.2
PSO384G0229 Papaver somniferum HOM05D004151 ORTHO05D004775 6.4e-52 208.0 148 82.4
Prupe.8G064800 Prunus persica HOM05D004151 ORTHO05D004775 6.4e-52 208.0 172 77.3
Dinv37014 Davidia involucrata HOM05D004151 ORTHO05D004775 8.3e-52 207.6 171 73.1
Medtr7g085640 Medicago truncatula HOM05D004151 ORTHO05D004775 8.3e-52 207.6 182 72.5
Sabra13G0051900 Salix brachista HOM05D004151 ORTHO05D004775 8.3e-52 207.6 177 72.9
Solyc10g078540.3 Solanum lycopersicum HOM05D004151 ORTHO05D004775 8.3e-52 207.6 146 83.6
Sopen10g029190 Solanum pennellii HOM05D004151 ORTHO05D004775 8.3e-52 207.6 146 83.6
Ah.06g191800 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.1e-51 207.2 175 75.4
Aqoxy1G00486 Aquilegia oxysepala HOM05D004151 ORTHO05D004775 1.1e-51 207.2 174 74.7
COL.COLO4_13597 Corchorus olitorius HOM05D004151 ORTHO05D004775 1.1e-51 207.2 142 84.5
CANSAT78G0749 Cannabis sativa HOM05D004151 ORTHO05D004775 1.4e-51 206.8 183 73.2
THA.LOC104827273 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 1.4e-51 206.8 170 74.1
CARHR078040 Cardamine hirsuta HOM05D004151 ORTHO05D004775 1.8e-51 206.5 166 72.3
Dinv14579 Davidia involucrata HOM05D004151 ORTHO05D004775 1.8e-51 206.5 183 71.6
QL07p019530 Quercus lobata HOM05D004151 ORTHO05D004775 2.4e-51 206.1 173 76.3
PGSC0003DMG400008366 Solanum tuberosum HOM05D004151 ORTHO05D004775 2.4e-51 206.1 146 82.9
TPR.G5895 Trifolium pratense HOM05D004151 ORTHO05D004775 3.2e-51 205.7 188 72.9
Phvul.001G110400 Phaseolus vulgaris HOM05D004151 ORTHO05D004775 4.1e-51 205.3 168 75.0
Aa31LG11G11430 Aethionema arabicum HOM05D004151 ORTHO05D004775 5.4e-51 204.9 171 75.4
CDE06G0359 Ceratophyllum demersum HOM05D004151 ORTHO05D004775 5.4e-51 204.9 143 83.2
Migut.J01888 Erythranthe guttata HOM05D004151 ORTHO05D004775 5.4e-51 204.9 198 70.7
Lalb_Chr22g0359191 Lupinus albus HOM05D004151 ORTHO05D004775 5.4e-51 204.9 176 71.6
PSO063G0165 Papaver somniferum HOM05D004151 ORTHO05D004775 5.4e-51 204.9 154 83.1
PSO782G4796 Papaver somniferum HOM05D004151 ORTHO05D004775 5.4e-51 204.9 148 82.4
Nn7g35851 Nelumbo nucifera HOM05D004151 ORTHO05D004775 7.0e-51 204.5 168 76.8
THA.LOC104802867 Tarenaya hassleriana HOM05D004151 ORTHO05D004775 7.0e-51 204.5 147 84.4
BolC1t05799H Brassica oleracea HOM05D004151 ORTHO05D004775 9.2e-51 204.1 178 71.3
MD00G1189600 Malus domestica HOM05D004151 ORTHO05D004775 9.2e-51 204.1 182 65.9
Sp3g02890 Schrenkiella parvula HOM05D004151 ORTHO05D004775 9.2e-51 204.1 161 77.0
Cfa016441 Carpinus fangiana HOM05D004151 ORTHO05D004775 1.2e-50 203.8 176 71.0
PSO339G5713 Papaver somniferum HOM05D004151 ORTHO05D004775 1.2e-50 203.8 142 83.8
MSTRG.19934 Avicennia marina HOM05D004151 ORTHO05D004775 1.6e-50 203.4 172 75.0
Psat0s1971g0280 Pisum sativum HOM05D004151 ORTHO05D004775 1.6e-50 203.4 178 74.7
SalBow5G4201 Salvia bowleyana HOM05D004151 ORTHO05D004775 1.6e-50 203.4 139 80.6
TWI34G0161 Tripterygium wilfordii HOM05D004151 ORTHO05D004775 2.0e-50 203.0 182 71.4
Sp6g26140 Schrenkiella parvula HOM05D004151 ORTHO05D004775 2.7e-50 202.6 185 71.9
SEGI_32651 Sequoiadendron giganteum HOM05D004151 ORTHO05D004775 2.7e-50 202.6 147 75.5
Potri.013G058400 Populus trichocarpa HOM05D004151 ORTHO05D004775 3.5e-50 202.2 155 76.8
Aa31LG5G14500 Aethionema arabicum HOM05D004151 ORTHO05D004775 4.6e-50 201.8 176 74.4
AUR62032690 Chenopodium quinoa HOM05D004151 ORTHO05D004775 4.6e-50 201.8 145 80.7
CiPaw.09G001900 Carya illinoinensis HOM05D004151 ORTHO05D004775 5.9e-50 201.4 173 73.4
Thhalv10021561m.g Eutrema salsugineum HOM05D004151 ORTHO05D004775 5.9e-50 201.4 152 78.3
A03p08690 Brassica napus HOM05D004151 ORTHO05D004775 7.8e-50 201.1 167 77.2
A01p41270 Brassica napus HOM05D004151 ORTHO05D004775 1.0e-49 200.7 166 75.9
BNapus_Darmor_BZH_scaffold_78p00440 Brassica napus HOM05D004151 ORTHO05D004775 1.0e-49 200.7 166 75.9
BcaC03g13582 Brassica carinata HOM05D004151 ORTHO05D004775 1.3e-49 200.3 158 78.5
BolC2t06882H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-49 200.3 158 78.5
HPP92_021240 Vanilla planifolia HOM05D004151 ORTHO05D004775 1.3e-49 200.3 173 73.4
Oeu049600.1 Olea europaea HOM05D004151 ORTHO05D004775 1.7e-49 199.9 173 74.6
Os11g0579800 Oryza sativa ssp. japonica HOM05D004151 ORTHO05D004775 1.7e-49 199.9 151 75.5
EL10Ac3g06820 Beta vulgaris HOM05D004151 ORTHO05D004775 2.3e-49 199.5 146 78.8
Carub.0006s1646 Capsella rubella HOM05D004151 ORTHO05D004775 5.0e-49 198.4 150 80.0
ATR0697G007 Amborella trichopoda HOM05D004151 ORTHO05D004775 6.6e-49 198.0 141 84.4
BolC3t13499H Brassica oleracea HOM05D004151 ORTHO05D004775 6.6e-49 198.0 164 76.2
BraA01t04550Z Brassica rapa HOM05D004151 ORTHO05D004775 8.6e-49 197.6 166 74.7
Haze_19418 Corylus avellana HOM05D004151 ORTHO05D004775 8.6e-49 197.6 153 74.5
Haze_19447 Corylus avellana HOM05D004151 ORTHO05D004775 8.6e-49 197.6 153 74.5
Sc25g0004980 Simmondsia chinensis HOM05D004151 ORTHO05D004775 8.6e-49 197.6 168 71.4
Ah.13g075350 Amaranthus hybridus HOM05D004151 ORTHO05D004775 1.1e-48 197.2 175 74.3
Hund24835 Selenicereus undatus HOM05D004151 ORTHO05D004775 1.1e-48 197.2 176 71.0
AT3G03920 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 1.5e-48 196.8 200 70.5
C02p09730 Brassica napus HOM05D004151 ORTHO05D004775 1.5e-48 196.8 158 77.8
Actinidia22083 Actinidia chinensis HOM05D004151 ORTHO05D004775 1.9e-48 196.4 171 73.7
AL6G29380 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 2.5e-48 196.1 144 78.5
Potri.019G034900 Populus trichocarpa HOM05D004151 ORTHO05D004775 2.5e-48 196.1 179 72.6
Zm00001eb200450 Zea mays HOM05D004151 ORTHO05D004775 2.5e-48 196.1 146 80.1
BcaNung05745 Brassica carinata HOM05D004151 ORTHO05D004775 4.3e-48 195.3 173 71.1
BcaB01g05179 Brassica carinata HOM05D004151 ORTHO05D004775 5.6e-48 194.9 164 75.6
C03p10140 Brassica napus HOM05D004151 ORTHO05D004775 5.6e-48 194.9 164 75.6
BraA03t10192Z Brassica rapa HOM05D004151 ORTHO05D004775 5.6e-48 194.9 164 75.6
Sabra19G0042500 Salix brachista HOM05D004151 ORTHO05D004775 5.6e-48 194.9 142 84.5
Sabra19G0044800 Salix brachista HOM05D004151 ORTHO05D004775 5.6e-48 194.9 142 84.5
unitig_21.g20195 Utricularia gibba HOM05D004151 ORTHO05D004775 1.2e-47 193.7 150 77.3
AT5G18180 Arabidopsis thaliana HOM05D004151 ORTHO05D004775 2.8e-47 192.6 177 67.2
BcaNung05743 Brassica carinata HOM05D004151 ORTHO05D004775 2.8e-47 192.6 167 72.5
vmacro09141 Vaccinium macrocarpon HOM05D004151 ORTHO05D004775 6.2e-47 191.4 154 76.0
Lsat_1_v5_gn_8_145841 Lactuca sativa HOM05D004151 ORTHO05D004775 1.1e-46 190.7 105 84.8
A02p04770 Brassica napus HOM05D004151 ORTHO05D004775 1.4e-46 190.3 171 71.3
AL3G13810 Arabidopsis lyrata HOM05D004151 ORTHO05D004775 1.8e-46 189.9 200 68.0
BraA02t05436Z Brassica rapa HOM05D004151 ORTHO05D004775 1.8e-46 189.9 161 73.9
CSS0045523 Camellia sinensis var. sinensis HOM05D004151 ORTHO05D004775 2.3e-46 189.5 187 67.9
Carub.0003s0316 Capsella rubella HOM05D004151 ORTHO05D004775 5.2e-46 188.3 198 63.6
HanXRQChr07g0204461 Helianthus annuus HOM05D004151 ORTHO05D004775 6.8e-46 188.0 146 78.1
BcaB05g23300 Brassica carinata HOM05D004151 ORTHO05D004775 1.5e-45 186.8 169 72.2
Rhsim04G0087500 Rhododendron simsii HOM05D004151 ORTHO05D004775 2.0e-45 186.4 148 73.6
HanXRQChr08g0216931 Helianthus annuus HOM05D004151 ORTHO05D004775 4.4e-45 185.3 180 68.3
Peaxi162Scf00076g01048 Petunia axillaris HOM05D004151 ORTHO05D004775 7.5e-45 184.5 143 79.7
Pp3c5_28430 Physcomitrium patens HOM05D004151 ORTHO05D004775 7.5e-45 184.5 147 74.1
Zm00001eb114360 Zea mays HOM05D004151 ORTHO05D004775 1.7e-44 183.3 226 58.8
ECA233G5487 Erigeron canadensis HOM05D004151 ORTHO05D004775 2.9e-44 182.6 171 66.1
COL.COLO4_13598 Corchorus olitorius HOM05D004151 ORTHO05D004775 4.9e-44 181.8 148 74.3
Lsat_1_v5_gn_8_24760 Lactuca sativa HOM05D004151 ORTHO05D004775 6.4e-44 181.4 177 68.4
Pp3c25_15020 Physcomitrium patens HOM05D004151 ORTHO05D004775 6.4e-44 181.4 107 77.6
Cpa.g.sc51.114 Carica papaya HOM05D004151 ORTHO05D004775 1.9e-43 179.9 91 92.3
Mapoly0086s0024 Marchantia polymorpha HOM05D004151 ORTHO05D004775 3.2e-43 179.1 147 72.8
AagrBONN_evm.TU.Sc2ySwM_362.2901 Anthoceros agrestis HOM05D004151 ORTHO05D004775 4.1e-43 178.7 152 67.8
CBR_g48747 Chara braunii HOM05D004151 ORTHO05D004775 4.1e-43 178.7 108 75.9
Cre13.g567850 Chlamydomonas reinhardtii HOM05D004151 ORTHO05D004775 2.0e-42 176.4 161 68.9
Nitab4.5_0002769g0090 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.7e-42 176.0 148 77.0
Ca_08267_v3 Cicer arietinum L. HOM05D004151 ORTHO05D004775 5.6e-40 168.3 118 74.6
CAN.G960.49 Capsicum annuum HOM05D004151 ORTHO05D004775 7.3e-40 167.9 94 86.2
Nitab4.5_0004844g0050 Nicotiana tabacum HOM05D004151 ORTHO05D004775 2.1e-39 166.4 89 86.5
Hund19236 Selenicereus undatus HOM05D004151 ORTHO05D004775 4.7e-39 165.2 116 73.3
MBI11_g31283_MAGBIO Magnolia biondii HOM05D004151 ORTHO05D004775 1.4e-35 153.7 81 85.2
BolC2t11912H Brassica oleracea HOM05D004151 ORTHO05D004775 3.0e-33 146.0 128 62.5
MCO13G219 Micromonas commoda HOM05D004151 ORTHO05D004775 3.9e-33 145.6 125 67.2
SMO347G0554 Selaginella moellendorffii HOM05D004151 ORTHO05D004775 1.5e-32 143.7 166 62.7
C09p58800 Brassica napus HOM05D004151 ORTHO05D004775 1.2e-29 134.0 80 76.2
BraA10t42874Z Brassica rapa HOM05D004151 ORTHO05D004775 2.2e-28 129.8 130 58.5
unitig_744.g24550 Utricularia gibba HOM05D004151 ORTHO05D004775 2.7e-26 122.9 60 95.0
PRCOL_00005119 Prasinoderma coloniale HOM05D005848 ORTHO05D007532 3.9e-25 119.0 76 67.1
Actinidia30553 Actinidia chinensis HOM05D004151 ORTHO05D004775 2.8e-23 112.8 90 67.8
C02p58510 Brassica napus HOM05D004151 ORTHO05D004775 8.1e-23 111.3 94 59.6
Haze_27090 Corylus avellana HOM05D000590 ORTHO05D004775 4.9e-20 102.1 114 48.2
HanXRQChr05g0143841 Helianthus annuus HOM05D004151 ORTHO05D004775 4.9e-20 102.1 163 48.5
Oeu035726.1 Olea europaea HOM05D004151 ORTHO05D004775 7.8e-18 94.7 99 54.5
Zm00001eb274230 Zea mays HOM05D004151 ORTHO05D004775 1.0e-17 94.4 49 83.7
Oeu035720.1 Olea europaea HOM05D004151 ORTHO05D004775 3.0e-17 92.8 99 53.5
Atru.chr10.1764 Acer truncatum HOM05D004151 ORTHO05D004775 2.0e-13 80.1 75 61.3
Atru.chr5.2304 Acer truncatum HOM05D004151 ORTHO05D004775 2.0e-13 80.1 75 61.3
Atru.chr6.7 Acer truncatum HOM05D004151 ORTHO05D004775 7.6e-13 78.2 75 60.0
Atru.chr13.534 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-12 77.0 75 60.0
Atru.chr2.3197 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-12 77.0 75 60.0
Atru.chr4.2011 Acer truncatum HOM05D004151 ORTHO05D004775 1.7e-12 77.0 75 60.0
BcaB08g36698 Brassica carinata HOM05D004151 ORTHO05D004775 5.4e-11 72.0 41 82.9
BolC9t58722H Brassica oleracea HOM05D004151 ORTHO05D004775 1.3e-09 67.4 149 49.0
ECA246G0128 Erigeron canadensis HOM05D001659 ORTHO05D001659 2.1e-07 60.1 35 74.3


User provided reference genes

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