Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0024292 Sechium edule HOM05D004330 ORTHO05D005182 0.0e+00 1330.5 708 100.0
CsaV3_2G033380 Cucumis sativus L. HOM05D004330 ORTHO05D005182 0.0e+00 1285.0 708 96.0
MELO3C008109.2 Cucumis melo HOM05D004330 ORTHO05D005182 0.0e+00 1264.2 726 93.0
ClCG11G008260 Citrullus lanatus HOM05D004330 ORTHO05D005182 0.0e+00 1258.0 710 94.5
Ciclev10019077m.g Citrus clementina HOM05D004330 ORTHO05D005182 0.0e+00 1175.6 708 85.5
Thecc.08G188100 Theobroma cacao HOM05D004330 ORTHO05D005182 0.0e+00 1175.2 708 85.9
Prupe.1G566400 Prunus persica HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 708 85.6
RcHm_v2.0_Chr6g0249411 Rosa chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1169.1 698 86.8
Dinv22060 Davidia involucrata HOM05D004330 ORTHO05D005182 0.0e+00 1167.5 708 85.5
Actinidia16901 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1167.1 708 84.5
GSVIVG01012102001 Vitis vinifera HOM05D004330 ORTHO05D005182 0.0e+00 1166.8 708 84.9
MD15G1440000 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1166.0 711 85.8
Glyma.03G252000 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1165.6 708 84.9
CSS0001083 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 698 85.8
Glyma.19G249400 Glycine max HOM05D004330 ORTHO05D005182 0.0e+00 1163.7 708 84.6
Cfa008036 Carpinus fangiana HOM05D004330 ORTHO05D005182 0.0e+00 1162.9 708 85.5
VMungo0540G0979 Vigna mungo HOM05D004330 ORTHO05D005182 0.0e+00 1162.1 708 84.5
CiPaw.04G008600 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 708 87.0
Phvul.006G106700 Phaseolus vulgaris HOM05D004330 ORTHO05D005182 0.0e+00 1161.7 708 84.7
CANSAT01G1169 Cannabis sativa HOM05D004330 ORTHO05D005182 0.0e+00 1160.6 708 85.0
Cpa.g.sc249.10 Carica papaya HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 698 85.2
Lj5g0027584 Lotus japonicus HOM05D004330 ORTHO05D005182 0.0e+00 1159.4 709 85.0
MD08G1244900 Malus domestica HOM05D004330 ORTHO05D005182 0.0e+00 1155.6 706 85.6
Hma1.2p1_0016F.1_g011010 Hydrangea macrophylla HOM05D004330 ORTHO05D005182 0.0e+00 1151.0 708 84.2
Actinidia29358 Actinidia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 708 83.9
Gorai.009G264800 Gossypium raimondii HOM05D004330 ORTHO05D005182 0.0e+00 1150.2 708 83.6
CiPaw.03G012300 Carya illinoinensis HOM05D004330 ORTHO05D005182 0.0e+00 1149.4 708 84.9
Gohir.D05G252400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1149.0 708 83.5
Gohir.A05G251400 Gossypium hirsutum HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 708 83.5
Lalb_Chr04g0261991 Lupinus albus HOM05D004330 ORTHO05D005182 0.0e+00 1148.7 699 85.1
Ca_09987_v3 Cicer arietinum L. HOM05D004330 ORTHO05D005182 0.0e+00 1147.5 690 87.0
arahy.Tifrunner.gnm1.ann1.7LJM3H Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 690 85.2
arahy.Tifrunner.gnm1.ann1.A4ASB6 Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 690 85.2
arahy.Tifrunner.gnm1.ann1.KU2W2N Arachis hypogaea HOM05D004330 ORTHO05D005182 0.0e+00 1145.2 690 85.2
Manes.15G103100 Manihot esculenta HOM05D004330 ORTHO05D005182 0.0e+00 1144.8 690 85.5
QL09p001201 Quercus lobata HOM05D004330 ORTHO05D005182 0.0e+00 1142.9 704 85.1
FvH4_2g00140 Fragaria vesca HOM05D004330 ORTHO05D005182 0.0e+00 1142.5 698 84.7
Eucgr.C04264 Eucalyptus grandis HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 700 84.1
Psat6g142240 Pisum sativum HOM05D004330 ORTHO05D005182 0.0e+00 1140.2 690 86.1
PGR031G1280 Punica granatum HOM05D004330 ORTHO05D005182 0.0e+00 1138.6 705 83.8
Nn6g32085 Nelumbo nucifera HOM05D004330 ORTHO05D005182 0.0e+00 1137.9 707 82.7
FAN24G1765 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 704 84.1
TPR.G10262 Trifolium pratense HOM05D004330 ORTHO05D005182 0.0e+00 1137.5 691 86.5
Nitab4.5_0000079g0120 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1134.4 694 83.6
Medtr1g079770 Medicago truncatula HOM05D004330 ORTHO05D005182 0.0e+00 1132.1 709 83.2
Cc10_g16170 Coffea canephora HOM05D004330 ORTHO05D005182 0.0e+00 1131.3 689 85.5
TWI12G0377 Tripterygium wilfordii HOM05D004330 ORTHO05D005182 0.0e+00 1130.9 736 81.5
HanXRQChr05g0150611 Helianthus annuus HOM05D004330 ORTHO05D005182 0.0e+00 1127.9 704 82.7
Sabra06G0020300 Salix brachista HOM05D004330 ORTHO05D005182 0.0e+00 1124.0 694 84.1
Nitab4.5_0007117g0020 Nicotiana tabacum HOM05D004330 ORTHO05D005182 0.0e+00 1123.2 694 83.0
DCAR_024855 Daucus carota HOM05D004330 ORTHO05D005182 0.0e+00 1121.7 731 80.0
Rhsim01G0101300 Rhododendron simsii HOM05D004330 ORTHO05D005182 0.0e+00 1121.3 719 81.5
FAN19G3045 Fragaria x ananassa HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 702 83.6
Potri.006G027100 Populus trichocarpa HOM05D004330 ORTHO05D005182 0.0e+00 1120.1 694 83.9
Duzib177G1138 Durio zibethinus HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 708 83.2
Solyc02g094090.4 Solanum lycopersicum HOM05D004330 ORTHO05D005182 0.0e+00 1118.6 695 82.4
CAN.G473.93 Capsicum annuum HOM05D004330 ORTHO05D005182 0.0e+00 1117.8 693 82.4
Sopen02g038710 Solanum pennellii HOM05D004330 ORTHO05D005182 0.0e+00 1116.3 695 82.3
vmacro06107 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 0.0e+00 1115.5 736 79.1
Aqoxy5G00868 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 0.0e+00 1113.6 708 80.6
CSS0008451 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 0.0e+00 1113.2 716 82.3
TAR628G0944 Trochodendron aralioides HOM05D004330 ORTHO05D005182 0.0e+00 1109.7 671 85.4
Peaxi162Scf00078g01141 Petunia axillaris HOM05D004330 ORTHO05D005182 0.0e+00 1106.3 711 80.5
Sp5g26470 Schrenkiella parvula HOM05D004330 ORTHO05D005182 0.0e+00 1105.1 706 79.7
BcaB03g14885 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1104.0 704 80.0
BolC6t39595H Brassica oleracea HOM05D004330 ORTHO05D005182 0.0e+00 1103.6 704 79.8
AT1G71270 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 708 79.2
BcaC08g46563 Brassica carinata HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 704 79.7
C06p45370 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1100.9 704 79.7
AL2G30885 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 0.0e+00 1100.1 708 79.2
A07p37610 Brassica napus HOM05D004330 ORTHO05D005182 0.0e+00 1099.7 704 79.5
ECA246G0284 Erigeron canadensis HOM05D004330 ORTHO05D005182 0.0e+00 1098.2 708 79.1
BraA07t31323Z Brassica rapa HOM05D004330 ORTHO05D005182 0.0e+00 1097.8 705 79.7
PSO210G1668 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1096.6 685 82.2
Carub.0002s1815 Capsella rubella HOM05D004330 ORTHO05D005182 0.0e+00 1096.3 708 78.8
PSO761G0081 Papaver somniferum HOM05D004330 ORTHO05D005182 0.0e+00 1094.7 685 82.0
Sc17g0000550 Simmondsia chinensis HOM05D004330 ORTHO05D005182 0.0e+00 1091.3 709 80.3
Lj7C415G17 Lonicera japonica HOM05D004330 ORTHO05D005182 0.0e+00 1088.6 708 79.8
AUR62024682 Chenopodium quinoa HOM05D004330 ORTHO05D005182 0.0e+00 1082.0 686 80.6
THA.LOC104823378 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1081.2 697 81.1
Migut.G00904 Erythranthe guttata HOM05D004330 ORTHO05D005182 0.0e+00 1079.7 694 80.1
Thhalv10018205m.g Eutrema salsugineum HOM05D004330 ORTHO05D005182 0.0e+00 1079.7 708 78.0
SalBow6G7193 Salvia bowleyana HOM05D004330 ORTHO05D005182 0.0e+00 1079.3 754 75.2
THA.LOC104803377 Tarenaya hassleriana HOM05D004330 ORTHO05D005182 0.0e+00 1076.6 697 79.2
ATR0580G447 Amborella trichopoda HOM05D004330 ORTHO05D005182 0.0e+00 1075.5 695 79.4
MSTRG.22475 Avicennia marina HOM05D004330 ORTHO05D005182 4.8e-310 1067.4 668 81.7
EL10As5g23498 Beta vulgaris HOM05D004330 ORTHO05D005182 1.2e-308 1062.8 686 80.2
Ah.11g049400 Amaranthus hybridus HOM05D004330 ORTHO05D005182 1.5e-308 1062.4 707 77.9
Oeu020638.1 Olea europaea HOM05D004330 ORTHO05D005182 2.0e-308 1062.0 777 73.1
Lsat_1_v5_gn_6_109860 Lactuca sativa HOM05D004330 ORTHO05D005182 4.2e-306 1054.3 682 79.6
Nitab4.5_0007150g0080 Nicotiana tabacum HOM05D004330 ORTHO05D005182 3.5e-305 1051.2 705 78.2
Aa31LG4G9240 Aethionema arabicum HOM05D004330 ORTHO05D005182 1.5e-303 1045.8 750 73.3
Os03g0417900 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 2.2e-302 1042.0 696 76.4
SalBow6G1408 Salvia bowleyana HOM05D004330 ORTHO05D005182 1.2e-300 1036.2 754 73.6
Aqoxy2G00735 Aquilegia oxysepala HOM05D004330 ORTHO05D005182 4.5e-300 1034.2 708 75.3
Nitab4.5_0002887g0010 Nicotiana tabacum HOM05D004330 ORTHO05D005182 6.1e-297 1023.8 666 80.2
unitig_37.g12692 Utricularia gibba HOM05D004330 ORTHO05D005182 5.3e-293 1010.7 731 72.8
Carub.0002s1817 Capsella rubella HOM05D004330 ORTHO05D005182 1.7e-291 1005.7 690 74.8
AT1G71300 Arabidopsis thaliana HOM05D004330 ORTHO05D005182 1.7e-283 979.2 747 68.5
COL.COLO4_37491 Corchorus olitorius HOM05D004330 ORTHO05D005182 2.0e-279 965.7 631 80.3
AUR62011839 Chenopodium quinoa HOM05D004330 ORTHO05D005182 7.4e-279 963.8 591 82.4
AL2G30900 Arabidopsis lyrata HOM05D004330 ORTHO05D005182 1.3e-270 936.4 620 77.9
Mapoly0091s0001 Marchantia polymorpha HOM05D004330 ORTHO05D005182 1.2e-268 929.9 682 68.6
AagrBONN_evm.TU.Sc2ySwM_228.5612 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.5e-268 928.3 689 68.1
AagrBONN_evm.TU.Sc2ySwM_228.5613 Anthoceros agrestis HOM05D004330 ORTHO05D005182 3.5e-268 928.3 689 68.1
Haze_02242 Corylus avellana HOM05D004330 ORTHO05D005182 9.8e-263 910.2 683 73.2
HPP92_006305 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.3e-262 909.8 584 79.5
SMO304G0018 Selaginella moellendorffii HOM05D004330 ORTHO05D005182 2.2e-262 909.1 692 67.5
Pp3c4_27380 Physcomitrium patens HOM05D004330 ORTHO05D005182 6.6e-259 897.5 697 66.4
vmacro23409 Vaccinium macrocarpon HOM05D004330 ORTHO05D005182 2.0e-255 885.9 589 78.3
Zm00001eb393130 Zea mays HOM05D004330 ORTHO05D005182 2.2e-254 882.5 566 78.3
Hund19537 Selenicereus undatus HOM05D004330 ORTHO05D005182 1.3e-251 873.2 554 80.7
Atru.chr13.2589 Acer truncatum HOM05D004330 ORTHO05D005182 1.6e-244 849.7 518 84.6
SHI24508 Sapria himalayana HOM05D004330 ORTHO05D005182 1.5e-239 833.2 676 67.2
MBI16_g23303_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.3e-227 793.5 489 83.6
Os10g0488300 Oryza sativa ssp. japonica HOM05D004330 ORTHO05D005182 3.3e-218 762.3 682 57.2
Zm00001eb045280 Zea mays HOM05D004330 ORTHO05D005182 1.5e-202 710.3 682 53.5
CDE03G0141 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.3e-198 697.2 423 82.3
COL.COLO4_33595 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.9e-194 683.3 470 78.7
SEGI_21093 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 6.5e-150 535.4 328 79.0
MCO11G104 Micromonas commoda HOM05D004330 ORTHO05D005182 1.7e-142 510.8 732 41.3
Cre08.g367200 Chlamydomonas reinhardtii HOM05D004330 ORTHO05D005182 5.6e-133 479.2 757 36.7
Migut.C00321 Erythranthe guttata HOM05D004330 ORTHO05D005182 8.0e-132 475.3 280 85.4
CSS0031487 Camellia sinensis var. sinensis HOM05D004330 ORTHO05D005182 5.4e-128 462.6 273 85.0
Haze_02247 Corylus avellana HOM05D004330 ORTHO05D005182 9.5e-125 451.8 269 86.2
SGA_v2.0_scaffold227G43197 Striga asiatica HOM05D004330 ORTHO05D005182 1.2e-111 408.3 253 80.6
CBR_g54934 Chara braunii HOM05D004330 ORTHO05D005182 4.6e-111 406.4 359 59.6
COL.COLO4_00397 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.0e-110 405.2 237 86.1
MBI16_g41537_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 7.3e-109 399.1 233 84.5
PRCOL_00005416 Prasinoderma coloniale HOM05D004330 ORTHO05D005182 6.9e-107 392.5 744 34.3
HPP92_006235 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.9e-98 362.1 261 75.5
CDE03G0281 Ceratophyllum demersum HOM05D004330 ORTHO05D005182 1.7e-97 361.3 249 77.9
HPP92_006237 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.5e-77 295.0 181 79.0
SalBow1G7663 Salvia bowleyana HOM05D001091 ORTHO05D001020 1.1e-75 288.9 215 69.8
FvH4_6g22200 Fragaria vesca HOM05D004330 ORTHO05D005182 1.6e-71 275.0 193 78.2
MBI13_g40628_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.0e-70 272.3 148 87.8
Rhsim02G0174800 Rhododendron simsii HOM05D004330 ORTHO05D005182 3.1e-67 260.8 195 69.7
CBR_g54936 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-58 231.5 155 65.8
FAN14G0768 Fragaria x ananassa HOM05D004330 ORTHO05D005182 1.4e-56 225.3 192 68.2
Oeu028617.1 Olea europaea HOM05D004330 ORTHO05D005182 2.1e-55 221.5 156 73.1
Actinidia09912 Actinidia chinensis HOM05D004330 ORTHO05D005182 1.8e-54 218.4 164 71.3
Cfa027264 Carpinus fangiana HOM05D004330 ORTHO05D005182 9.1e-51 206.1 489 29.7
QL09p008022 Quercus lobata HOM05D004330 ORTHO05D005182 4.7e-47 193.7 237 50.6
QL04p036179 Quercus lobata HOM05D004330 ORTHO05D037441 2.0e-45 188.3 180 62.2
HanXRQChr10g0312231 Helianthus annuus HOM05D004330 ORTHO05D005182 7.7e-42 176.4 102 88.2
Hund19535 Selenicereus undatus HOM05D004330 ORTHO05D005182 5.0e-41 173.7 114 80.7
Rhsim02G0174700 Rhododendron simsii HOM05D004330 ORTHO05D005182 1.9e-40 171.8 107 86.0
Nitab4.5_0006062g0030 Nicotiana tabacum HOM05D004330 ORTHO05D005182 1.2e-39 169.1 122 73.0
SEGI_19884 Sequoiadendron giganteum HOM05D004330 ORTHO05D005182 7.5e-37 159.8 111 73.9
CARHR152420 Cardamine hirsuta HOM05D004330 ORTHO05D005182 1.3e-28 132.5 151 53.0
COL.COLO4_23503 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.2e-26 125.9 92 73.9
Haze_14000 Corylus avellana HOM05D004330 ORTHO05D005182 4.5e-26 124.0 72 88.9
C06p46260 Brassica napus HOM05D004330 ORTHO05D005182 5.9e-26 123.6 100 67.0
C06p46170 Brassica napus HOM05D004330 ORTHO05D005182 8.6e-25 119.8 100 65.0
C06p46210 Brassica napus HOM05D004330 ORTHO05D005182 8.6e-25 119.8 100 65.0
MBI13_g40627_MAGBIO Magnolia biondii HOM05D004330 ORTHO05D005182 1.5e-24 119.0 80 76.2
CARHR064590 Cardamine hirsuta HOM05D004330 ORTHO05D005182 3.0e-22 111.3 127 51.2
EL10Ac2g03252 Beta vulgaris HOM05D004330 ORTHO05D005182 4.4e-21 107.5 69 72.5
Zm00001eb371470 Zea mays HOM05D003702 ORTHO05D004653 1.3e-20 105.9 63 81.0
Zm00001eb378040 Zea mays HOM05D004330 ORTHO05D000629 5.4e-19 100.5 59 83.1
HPP92_006236 Vanilla planifolia HOM05D004330 ORTHO05D005182 9.2e-19 99.8 57 86.0
Zm00001eb294100 Zea mays HOM05D003702 ORTHO05D004653 9.2e-19 99.8 77 67.5
HPP92_006372 Vanilla planifolia HOM05D004330 ORTHO05D005182 1.2e-15 89.4 78 61.5
EL10Ac2g03375 Beta vulgaris HOM05D015602 ORTHO05D006373 2.1e-15 88.6 65 72.3
COL.COLO4_37492 Corchorus olitorius HOM05D004330 ORTHO05D005182 1.5e-13 82.4 61 72.1
Haze_02240 Corylus avellana HOM05D000586 ORTHO05D001010 2.2e-12 78.6 61 68.9
SGA_v2.0_scaffold123G33447 Striga asiatica HOM05D004330 ORTHO05D005182 3.7e-12 77.8 78 51.3
GSVIVG01018671001 Vitis vinifera HOM05D004330 ORTHO05D005182 5.0e-09 67.4 50 64.0
QL05p049490 Quercus lobata HOM05D000205 ORTHO05D037441 1.1e-08 66.2 40 82.5


User provided reference genes

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