Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 0.0e+00 1653.6 813 100.0
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 0.0e+00 1555.4 807 93.7
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 0.0e+00 1551.2 807 93.4
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 0.0e+00 1528.1 888 85.7
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 0.0e+00 1383.6 810 83.1
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1382.9 810 83.1
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 0.0e+00 1371.3 809 82.0
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 0.0e+00 1370.9 810 82.7
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1365.1 810 81.5
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 0.0e+00 1363.2 815 81.1
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 0.0e+00 1363.2 810 81.5
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 0.0e+00 1362.8 811 81.6
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 0.0e+00 1358.6 808 81.4
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1353.6 815 81.1
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 0.0e+00 1352.8 810 80.2
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 0.0e+00 1351.3 810 81.1
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 0.0e+00 1348.6 813 80.4
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 0.0e+00 1347.4 808 80.4
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1347.4 815 81.0
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1345.9 811 81.3
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1338.9 808 80.3
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1337.8 806 80.0
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 0.0e+00 1337.4 808 80.3
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 0.0e+00 1336.6 808 80.1
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 0.0e+00 1335.5 808 80.0
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 0.0e+00 1334.3 817 79.1
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 0.0e+00 1333.2 807 80.0
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1332.8 807 79.2
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 808 79.5
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 810 79.1
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 0.0e+00 1329.3 810 77.9
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 0.0e+00 1328.9 809 80.0
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 0.0e+00 1328.5 807 79.2
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1325.8 812 78.7
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 0.0e+00 1325.5 815 78.8
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1324.3 807 79.2
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 0.0e+00 1322.4 808 79.2
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 0.0e+00 1322.0 815 77.5
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 0.0e+00 1321.6 809 79.0
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 0.0e+00 1320.4 807 78.8
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 0.0e+00 1319.3 806 78.9
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 0.0e+00 1316.2 811 77.8
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 0.0e+00 1314.3 816 79.2
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 0.0e+00 1313.9 817 78.2
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 0.0e+00 1310.8 811 77.8
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1310.0 811 78.5
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1295.0 809 76.6
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 0.0e+00 1293.5 811 77.3
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 0.0e+00 1293.5 809 76.3
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 0.0e+00 1291.9 811 78.2
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1289.2 809 77.3
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1284.2 808 77.5
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 0.0e+00 1278.5 834 76.1
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 0.0e+00 1277.3 822 75.1
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 0.0e+00 1276.5 807 76.2
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 0.0e+00 1272.3 796 76.8
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 0.0e+00 1270.8 811 76.3
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 0.0e+00 1270.0 808 76.2
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 0.0e+00 1269.6 807 76.2
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 0.0e+00 1265.0 807 75.0
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 0.0e+00 1264.6 809 75.4
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 0.0e+00 1263.8 814 75.7
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 0.0e+00 1263.4 807 75.1
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1261.5 806 74.9
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 0.0e+00 1260.7 807 75.1
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 807 75.3
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 807 75.3
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1260.0 805 75.2
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1258.8 807 74.7
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1256.5 808 75.2
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1256.1 806 74.9
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 0.0e+00 1255.0 807 75.0
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 0.0e+00 1253.4 806 75.1
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 0.0e+00 1251.1 807 75.0
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1250.3 822 73.8
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 0.0e+00 1248.8 814 74.3
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 805 74.4
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 0.0e+00 1248.0 784 77.2
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 0.0e+00 1245.0 810 74.6
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 0.0e+00 1244.6 805 74.2
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 0.0e+00 1243.4 807 74.7
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 0.0e+00 1240.7 807 74.6
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 0.0e+00 1238.8 803 75.1
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 0.0e+00 1236.9 864 70.1
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 0.0e+00 1235.7 807 74.3
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 0.0e+00 1231.9 807 73.9
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 0.0e+00 1223.4 815 72.9
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 0.0e+00 1221.8 815 73.0
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 0.0e+00 1218.8 868 68.9
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 0.0e+00 1218.4 811 73.6
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1215.3 807 72.6
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 0.0e+00 1206.0 808 74.4
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 0.0e+00 1198.3 860 67.4
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 0.0e+00 1198.0 814 72.0
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 0.0e+00 1194.1 828 71.5
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 0.0e+00 1184.9 810 71.0
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 0.0e+00 1182.2 808 72.3
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 0.0e+00 1181.8 811 72.7
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 0.0e+00 1179.1 808 69.8
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 0.0e+00 1176.0 807 70.8
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 0.0e+00 1175.2 812 69.8
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 0.0e+00 1174.1 911 65.9
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 0.0e+00 1172.5 811 70.3
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 0.0e+00 1167.9 765 74.4
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 0.0e+00 1158.3 965 63.5
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 0.0e+00 1145.6 784 71.2
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 0.0e+00 1139.4 962 62.3
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 0.0e+00 1122.1 807 68.8
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 0.0e+00 1099.0 815 65.5
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 0.0e+00 1095.5 820 64.8
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.2e-310 1068.1 808 67.5
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 9.3e-310 1066.6 812 68.3
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 1.6e-288 996.1 607 78.6
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.0e-287 993.4 803 61.5
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 1.7e-282 976.1 807 60.8
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 3.1e-244 849.0 786 58.0
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.4e-193 680.6 379 85.0
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 5.3e-188 662.1 859 44.0
Haze_26164 Corylus avellana HOM05D004364 ORTHO05D006299 2.1e-176 623.6 830 43.0
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 9.8e-158 561.6 808 42.9
Cre02.g080350 Chlamydomonas reinhardtii HOM05D004364 ORTHO05D006299 1.2e-155 554.7 938 36.0
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 3.0e-146 523.5 847 38.0
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 9.6e-121 438.7 404 55.7
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 2.4e-119 434.1 320 65.6
TAR624G1198 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.8e-111 407.9 264 71.2
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 6.4e-109 399.4 347 62.2
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 2.2e-85 321.2 671 35.5
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 2.9e-85 320.9 240 69.2
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 3.7e-72 277.3 199 68.8
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 4.7e-67 260.4 175 74.9
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.7e-45 188.7 141 70.9
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 1.8e-42 178.7 194 55.7
GSVIVG01014461001 Vitis vinifera HOM05D004364 ORTHO05D006299 2.9e-40 171.4 102 77.5
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 5.9e-38 163.7 90 80.0
Lj1g0002875 Lotus japonicus HOM05D004364 ORTHO05D236196 3.0e-37 161.4 270 42.2
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 4.3e-36 157.5 106 70.8
SEGI_32785 Sequoiadendron giganteum HOM05D004364 ORTHO05D014012 7.3e-36 156.8 108 63.9
MD15G1178100 Malus domestica HOM05D004364 ORTHO05D246722 3.2e-31 141.4 181 47.0
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.7e-29 135.6 98 70.4
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 6.2e-27 127.1 123 59.3
Pp3c21_16740 Physcomitrium patens HOM05D004364 ORTHO05D006299 3.1e-26 124.8 190 40.5
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 8.9e-26 123.2 88 70.5
CBR_g76006 Chara braunii HOM05D004364 ORTHO05D006299 1.2e-25 122.9 114 50.0
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 1.5e-25 122.5 118 55.9
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 2.6e-25 121.7 174 43.1
SHI10079 Sapria himalayana HOM05D004364 ORTHO05D006299 3.0e-21 108.2 118 52.5
Medtr4g077475 Medicago truncatula HOM05D004364 ORTHO05D006299 1.1e-20 106.3 261 29.1
Sabra16G0271600 Salix brachista HOM05D004364 ORTHO05D006299 2.5e-20 105.1 69 73.9
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 2.3e-18 98.6 145 45.5
TAR624G0891 Trochodendron aralioides HOM05D000008 ORTHO05D000005 2.6e-17 95.1 75 60.0
Nn8g40041 Nelumbo nucifera HOM05D004364 ORTHO05D006299 5.8e-17 94.0 50 82.0
GSVIVG01015716001 Vitis vinifera HOM05D004364 ORTHO05D439286 2.9e-16 91.7 59 76.3
GSVIVG01014463001 Vitis vinifera HOM05D004364 ORTHO05D441130 4.9e-16 90.9 68 66.2
Nn6g32117 Nelumbo nucifera HOM05D004364 ORTHO05D006299 8.4e-16 90.1 43 90.7
Nn6g32116 Nelumbo nucifera HOM05D004364 ORTHO05D014012 2.5e-12 78.6 51 74.5
MD15G1178000 Malus domestica HOM05D004364 ORTHO05D006299 2.1e-11 75.5 62 51.6
Sed0011564 Sechium edule HOM05D000344 ORTHO05D003478 5.2e-10 70.9 448 22.5
MCO15G019 Micromonas commoda HOM05D002714 ORTHO05D020415 8.9e-10 70.1 588 21.4
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 2.6e-09 68.6 129 36.4
PGR044G0522 Punica granatum HOM05D000344 ORTHO05D003478 4.9e-08 64.3 469 21.5
Lj8A161T45 Lonicera japonica HOM05D004364 ORTHO05D019261 1.1e-07 63.2 70 55.7
Nn8g40042 Nelumbo nucifera HOM05D004364 ORTHO05D006299 3.2e-07 61.6 34 82.4
Gohir.D05G357560 Gossypium hirsutum HOM05D004364 ORTHO05D017991 4.2e-07 61.2 57 56.1
Gohir.D10G199250 Gossypium hirsutum HOM05D004364 ORTHO05D017991 7.1e-07 60.5 57 56.1
Gohir.D11G177550 Gossypium hirsutum HOM05D004364 ORTHO05D017991 7.1e-07 60.5 57 56.1
Peaxi162Scf00087g00128 Petunia axillaris HOM05D003775 ORTHO05D004314 2.1e-06 58.9 315 23.8
Gorai.002G149500 Gossypium raimondii HOM05D003868 ORTHO05D017991 2.7e-06 58.5 57 52.6
CBR_g66808 Chara braunii HOM05D003775 ORTHO05D004314 3.5e-06 58.2 315 23.8
Gohir.D05G317650 Gossypium hirsutum HOM05D003868 ORTHO05D017991 3.5e-06 58.2 54 57.4
Solyc01g068240.3 Solanum lycopersicum HOM05D003775 ORTHO05D004314 4.6e-06 57.8 270 23.3


User provided reference genes

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