Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0018566 Sechium edule HOM05D006305 ORTHO05D007984 2.4e-159 565.5 292 100.0
CsaV3_6G002610 Cucumis sativus L. HOM05D006305 ORTHO05D007984 8.7e-141 503.8 294 88.8
MELO3C025022.2 Cucumis melo HOM05D006305 ORTHO05D007984 2.0e-137 492.7 294 88.1
ClCG08G002270 Citrullus lanatus HOM05D006305 ORTHO05D007984 5.8e-137 491.1 294 87.4
FAN14G0751 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.3e-112 410.2 301 71.8
FAN14G5210 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.3e-112 410.2 301 71.8
FvH4_6g05460 Fragaria vesca HOM05D006305 ORTHO05D007984 8.5e-112 407.5 297 71.7
FAN05G5097 Fragaria x ananassa HOM05D006305 ORTHO05D007984 7.2e-111 404.4 297 71.4
FAN05G0068 Fragaria x ananassa HOM05D006305 ORTHO05D007984 1.6e-110 403.3 297 71.0
Medtr1g082570 Medicago truncatula HOM05D006305 ORTHO05D007984 5.2e-109 398.3 299 70.9
RcHm_v2.0_Chr3g0454231 Rosa chinensis HOM05D006305 ORTHO05D007984 2.0e-108 396.4 297 69.4
CiPaw.07G015100 Carya illinoinensis HOM05D006305 ORTHO05D007984 3.3e-108 395.6 309 70.6
MD04G1208500 Malus domestica HOM05D006305 ORTHO05D007984 4.8e-107 391.7 301 70.1
Ciclev10001229m.g Citrus clementina HOM05D006305 ORTHO05D007984 8.2e-107 391.0 295 70.8
Sp3g04060 Schrenkiella parvula HOM05D006305 ORTHO05D007984 8.2e-107 391.0 305 67.9
Ca_10097_v3 Cicer arietinum L. HOM05D006305 ORTHO05D007984 1.1e-106 390.6 295 69.5
CANSAT54G0217 Cannabis sativa HOM05D006305 ORTHO05D007984 1.4e-106 390.2 300 70.0
Manes.09G164300 Manihot esculenta HOM05D006305 ORTHO05D007984 1.4e-106 390.2 292 70.2
Eucgr.H04470 Eucalyptus grandis HOM05D006305 ORTHO05D007984 2.4e-106 389.4 297 70.4
FAN02G0061 Fragaria x ananassa HOM05D006305 ORTHO05D007984 4.1e-106 388.7 292 70.9
QL03p004578 Quercus lobata HOM05D006305 ORTHO05D007984 4.1e-106 388.7 312 68.3
BcaC05g30009 Brassica carinata HOM05D006305 ORTHO05D007984 2.6e-105 386.0 300 68.3
C05p61980 Brassica napus HOM05D006305 ORTHO05D007984 2.6e-105 386.0 300 68.3
BcaC05g30168 Brassica carinata HOM05D006305 ORTHO05D007984 3.5e-105 385.6 302 67.5
TWI56G0624 Tripterygium wilfordii HOM05D006305 ORTHO05D007984 4.5e-105 385.2 290 70.3
BolC5t34858H Brassica oleracea HOM05D006305 ORTHO05D007984 5.9e-105 384.8 300 68.3
Hma1.2p1_0666F.1_g199520 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 1.0e-104 384.0 295 68.5
Phvul.007G181700 Phaseolus vulgaris HOM05D006305 ORTHO05D007984 1.0e-104 384.0 301 68.4
CAN.G479.41 Capsicum annuum HOM05D006305 ORTHO05D007984 1.3e-104 383.6 291 68.7
Lj9A683T26 Lonicera japonica HOM05D006305 ORTHO05D007984 1.3e-104 383.6 297 68.4
Atru.chr2.472 Acer truncatum HOM05D006305 ORTHO05D007984 2.9e-104 382.5 296 67.9
Thecc.05G307300 Theobroma cacao HOM05D006305 ORTHO05D007984 2.9e-104 382.5 302 68.2
Thhalv10020823m.g Eutrema salsugineum HOM05D006305 ORTHO05D007984 3.8e-104 382.1 310 65.5
Psat0ss6702g0320 Pisum sativum HOM05D006305 ORTHO05D007984 8.5e-104 380.9 297 68.7
Migut.F01514 Erythranthe guttata HOM05D006305 ORTHO05D007984 1.1e-103 380.6 298 68.8
A05p42370 Brassica napus HOM05D006305 ORTHO05D007984 1.9e-103 379.8 302 67.2
BraA05t23013Z Brassica rapa HOM05D006305 ORTHO05D007984 1.9e-103 379.8 302 67.2
EL10Ac4g09328 Beta vulgaris HOM05D006305 ORTHO05D007984 2.5e-103 379.4 296 67.2
SalBow6G6985 Salvia bowleyana HOM05D006305 ORTHO05D007984 2.5e-103 379.4 295 68.8
SGA_v2.0_scaffold34G13953 Striga asiatica HOM05D006305 ORTHO05D007984 2.5e-103 379.4 301 68.4
Dinv23970 Davidia involucrata HOM05D006305 ORTHO05D007984 3.2e-103 379.0 302 67.9
PGR031G3204 Punica granatum HOM05D006305 ORTHO05D007984 4.2e-103 378.6 302 67.2
Aqoxy5G04250 Aquilegia oxysepala HOM05D006305 ORTHO05D007984 5.5e-103 378.3 299 67.9
Glyma.10G156300 Glycine max HOM05D006305 ORTHO05D007984 9.4e-103 377.5 284 70.8
Lsat_1_v5_gn_2_67520 Lactuca sativa HOM05D006305 ORTHO05D007984 2.1e-102 376.3 296 68.2
GSVIVG01000016001 Vitis vinifera HOM05D006305 ORTHO05D007984 2.1e-102 376.3 282 72.0
Carub.0003s0446 Capsella rubella HOM05D006305 ORTHO05D007984 1.8e-101 373.2 301 64.8
Nitab4.5_0002756g0070 Nicotiana tabacum HOM05D006305 ORTHO05D007984 1.8e-101 373.2 308 64.6
CSS0021232 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 4.0e-101 372.1 296 67.2
Gorai.013G204500 Gossypium raimondii HOM05D006305 ORTHO05D007984 6.7e-101 371.3 284 70.8
arahy.Tifrunner.gnm1.ann1.84BFE2 Arachis hypogaea HOM05D006305 ORTHO05D007984 8.8e-101 370.9 302 67.5
Cfa006552 Carpinus fangiana HOM05D006305 ORTHO05D007984 8.8e-101 370.9 299 67.6
Cc02_g33730 Coffea canephora HOM05D006305 ORTHO05D007984 1.1e-100 370.5 302 67.5
AL3G15630 Arabidopsis lyrata HOM05D006305 ORTHO05D007984 1.5e-100 370.2 301 65.4
CSS0018445 Camellia sinensis var. sinensis HOM05D006305 ORTHO05D007984 2.0e-100 369.8 296 67.6
PGSC0003DMG400024658 Solanum tuberosum HOM05D006305 ORTHO05D007984 2.0e-100 369.8 297 64.3
VMungo0720G1654 Vigna mungo HOM05D006305 ORTHO05D007984 2.6e-100 369.4 282 69.9
CDE11G1040 Ceratophyllum demersum HOM05D006305 ORTHO05D007984 3.3e-100 369.0 289 67.5
PSO782G4398 Papaver somniferum HOM05D006305 ORTHO05D007984 5.7e-100 368.2 294 67.3
Potri.005G036700 Populus trichocarpa HOM05D006305 ORTHO05D007984 5.7e-100 368.2 302 66.2
Gohir.D13G179200 Gossypium hirsutum HOM05D006305 ORTHO05D007984 7.5e-100 367.9 284 69.7
Rhsim05G0143900 Rhododendron simsii HOM05D006305 ORTHO05D007984 7.5e-100 367.9 304 67.8
Ah.06g189130 Amaranthus hybridus HOM05D006305 ORTHO05D007984 1.3e-99 367.1 302 66.2
Lj5g0026498 Lotus japonicus HOM05D006305 ORTHO05D007984 1.3e-99 367.1 279 69.5
TAR636G3548 Trochodendron aralioides HOM05D006305 ORTHO05D007984 1.7e-99 366.7 297 66.3
Solyc03g115580.4 Solanum lycopersicum HOM05D006305 ORTHO05D007984 2.2e-99 366.3 299 64.2
Gohir.A13G173500 Gossypium hirsutum HOM05D006305 ORTHO05D007984 8.2e-99 364.4 301 66.8
HPP92_015091 Vanilla planifolia HOM05D006305 ORTHO05D007984 1.8e-98 363.2 298 65.1
Nn3g18889 Nelumbo nucifera HOM05D006305 ORTHO05D007984 7.0e-98 361.3 282 67.0
Sabra05G0037100 Salix brachista HOM05D006305 ORTHO05D007984 1.2e-97 360.5 302 65.2
HanXRQChr15g0472081 Helianthus annuus HOM05D006305 ORTHO05D007984 5.9e-97 358.2 298 64.8
Lalb_Chr02g0148341 Lupinus albus HOM05D006305 ORTHO05D007984 7.7e-97 357.8 299 65.9
DCAR_029432 Daucus carota HOM05D006305 ORTHO05D007984 1.0e-96 357.5 298 63.8
Peaxi162Scf00274g00026 Petunia axillaris HOM05D006305 ORTHO05D007984 1.0e-96 357.5 345 58.0
MSTRG.306 Avicennia marina HOM05D006305 ORTHO05D007984 1.7e-96 356.7 308 63.3
arahy.Tifrunner.gnm1.ann1.39Z7HW Arachis hypogaea HOM05D006305 ORTHO05D007984 2.2e-96 356.3 285 67.7
Sopen03g034570 Solanum pennellii HOM05D006305 ORTHO05D007984 2.2e-96 356.3 295 63.1
ATR0620G066 Amborella trichopoda HOM05D006305 ORTHO05D007984 8.5e-96 354.4 298 63.8
BcaC05g30019 Brassica carinata HOM05D006305 ORTHO05D007984 2.5e-95 352.8 300 64.3
Aa31LG5G15590 Aethionema arabicum HOM05D006305 ORTHO05D007984 3.2e-95 352.4 312 61.9
ECA238G3439 Erigeron canadensis HOM05D006305 ORTHO05D007984 3.2e-95 352.4 298 64.4
Hund21683 Selenicereus undatus HOM05D006305 ORTHO05D007984 3.2e-95 352.4 289 65.1
unitig_746.g26625 Utricularia gibba HOM05D006305 ORTHO05D007984 2.7e-94 349.4 300 64.0
vmacro19639 Vaccinium macrocarpon HOM05D006305 ORTHO05D007984 2.7e-94 349.4 354 56.8
THA.LOC104820089 Tarenaya hassleriana HOM05D006305 ORTHO05D007984 4.7e-94 348.6 312 61.9
AUR62005086 Chenopodium quinoa HOM05D006305 ORTHO05D007984 7.5e-92 341.3 194 84.0
Zm00001eb043410 Zea mays HOM05D006305 ORTHO05D007984 7.5e-92 341.3 313 58.8
COL.COLO4_19840 Corchorus olitorius HOM05D006305 ORTHO05D007984 1.3e-91 340.5 192 84.9
AUR62000888 Chenopodium quinoa HOM05D006305 ORTHO05D007984 6.3e-91 338.2 194 83.0
Prupe.6G329400 Prunus persica HOM05D006305 ORTHO05D007984 3.5e-89 332.4 176 88.6
AT3G05210 Arabidopsis thaliana HOM05D006305 ORTHO05D007984 7.7e-89 331.3 282 63.1
Os10g0518900 Oryza sativa ssp. japonica HOM05D006305 ORTHO05D007984 5.5e-87 325.1 185 81.1
MBI04_g21739_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 5.2e-85 318.5 190 81.1
Pp3c6_29610 Physcomitrium patens HOM05D006305 ORTHO05D007984 2.8e-83 312.8 251 63.7
SMO146G0211 Selaginella moellendorffii HOM05D006305 ORTHO05D007984 4.9e-83 312.0 200 76.5
PSO063G7033 Papaver somniferum HOM05D006305 ORTHO05D007984 6.3e-83 311.6 299 60.2
Mapoly0128s0010 Marchantia polymorpha HOM05D006305 ORTHO05D007984 5.9e-81 305.1 251 63.3
CBR_g4857 Chara braunii HOM05D006305 ORTHO05D007984 7.7e-81 304.7 253 60.1
Sc16g0008400 Simmondsia chinensis HOM05D006305 ORTHO05D007984 3.8e-80 302.4 259 63.7
Haze_04230 Corylus avellana HOM05D006305 ORTHO05D007984 2.4e-74 283.1 326 53.1
CARHR079550 Cardamine hirsuta HOM05D006305 ORTHO05D007984 2.1e-70 270.0 167 77.8
Ciclev10003828m.g Citrus clementina HOM05D006305 ORTHO05D007984 2.0e-68 263.5 208 67.8
TPR.G22794 Trifolium pratense HOM05D006305 ORTHO05D007984 3.2e-66 256.1 136 90.4
Ciclev10002028m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.2e-65 254.2 170 75.3
MBI04_g44620_MAGBIO Magnolia biondii HOM05D006305 ORTHO05D007984 4.6e-65 252.3 138 86.2
Hma1.2p1_0666F.1_g199530 Hydrangea macrophylla HOM05D006305 ORTHO05D007984 4.7e-62 242.3 141 83.7
AagrBONN_evm.TU.Sc2ySwM_369.531 Anthoceros agrestis HOM05D006305 ORTHO05D007984 1.1e-61 241.1 242 53.7
Cre03.g196651 Chlamydomonas reinhardtii HOM05D006305 ORTHO05D007984 7.1e-58 228.4 184 59.2
Nitab4.5_0001211g0080 Nicotiana tabacum HOM05D006305 ORTHO05D007984 3.9e-56 222.6 310 46.8
Cpa.g.sc1183.2 Carica papaya HOM05D006305 ORTHO05D007984 8.6e-56 221.5 307 47.6
Duzib106G1918 Durio zibethinus HOM05D006305 ORTHO05D007984 2.3e-53 213.4 300 46.3
PRCOL_00003423 Prasinoderma coloniale HOM05D006305 ORTHO05D007984 9.9e-44 181.4 183 47.0
Ciclev10003373m.g Citrus clementina HOM05D006305 ORTHO05D007984 1.9e-42 177.2 170 61.2
Ciclev10003460m.g Citrus clementina HOM05D006305 ORTHO05D007984 2.1e-38 163.7 163 56.4
Cfa026476 Carpinus fangiana HOM05D006305 ORTHO05D007984 2.4e-37 160.2 205 41.0
TPR.G7405 Trifolium pratense HOM05D006305 ORTHO05D007984 2.0e-28 130.6 160 51.2
MCO01G606 Micromonas commoda HOM05D006305 ORTHO05D007984 5.8e-28 129.0 191 36.1
SalBow6G3462 Salvia bowleyana HOM05D006305 ORTHO05D007984 1.2e-25 121.3 154 50.6
MELO3C033326.2 Cucumis melo HOM05D006305 ORTHO05D168382 8.7e-16 88.6 97 58.8
Pp3c16_18520 Physcomitrium patens HOM05D006305 ORTHO05D007984 4.1e-13 79.7 167 31.7
Glyma.20G232002 Glycine max HOM05D006305 ORTHO05D007984 7.9e-09 65.5 36 86.1


User provided reference genes

Program Settings