Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014921 Sechium edule HOM05D004364 ORTHO05D006299 6.0e-205 717.2 347 100.0
Sed0018829 Sechium edule HOM05D004364 ORTHO05D006299 2.8e-85 319.7 671 35.5
CsaV3_3G044300 Cucumis sativus L. HOM05D004364 ORTHO05D006299 7.5e-83 311.6 671 34.7
MELO3C018182.2 Cucumis melo HOM05D004364 ORTHO05D006299 1.7e-82 310.5 671 35.0
ClCG11G018570 Citrullus lanatus HOM05D004364 ORTHO05D006299 5.2e-76 288.9 756 32.1
Lalb_Chr02g0159341 Lupinus albus HOM05D004364 ORTHO05D006299 4.9e-66 255.8 684 31.1
Lalb_Chr06g0175311 Lupinus albus HOM05D004364 ORTHO05D006299 1.9e-65 253.8 665 30.8
CSS0013066 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 2.1e-64 250.4 629 31.2
Haze_09550 Corylus avellana HOM05D004364 ORTHO05D006299 3.5e-64 249.6 310 47.4
arahy.Tifrunner.gnm1.ann1.19RIMK Arachis hypogaea HOM05D004364 ORTHO05D006299 7.8e-64 248.4 681 30.0
Potri.011G125800 Populus trichocarpa HOM05D004364 ORTHO05D006299 1.3e-63 247.7 310 46.5
MD11G1234900 Malus domestica HOM05D004364 ORTHO05D006299 1.7e-63 247.3 310 47.4
Cfa020489 Carpinus fangiana HOM05D004364 ORTHO05D006299 2.3e-63 246.9 310 47.4
Prupe.4G192200 Prunus persica HOM05D004364 ORTHO05D006299 2.3e-63 246.9 679 30.8
arahy.Tifrunner.gnm1.ann1.B7TU6S Arachis hypogaea HOM05D004364 ORTHO05D006299 5.1e-63 245.7 681 30.1
Ciclev10007478m.g Citrus clementina HOM05D004364 ORTHO05D006299 5.1e-63 245.7 344 43.0
Atru.chr2.2938 Acer truncatum HOM05D004364 ORTHO05D006299 1.5e-62 244.2 303 47.2
CSS0001646 Camellia sinensis var. sinensis HOM05D004364 ORTHO05D006299 1.9e-62 243.8 320 44.7
GSVIVG01014465001 Vitis vinifera HOM05D004364 ORTHO05D006299 1.9e-62 243.8 332 44.3
Potri.001G408800 Populus trichocarpa HOM05D004364 ORTHO05D006299 2.5e-62 243.4 310 46.8
FvH4_3g21160 Fragaria vesca HOM05D004364 ORTHO05D006299 4.3e-62 242.7 310 46.8
TAR626G1658 Trochodendron aralioides HOM05D004364 ORTHO05D006299 4.3e-62 242.7 671 29.4
CANSAT11G0334 Cannabis sativa HOM05D004364 ORTHO05D006299 7.3e-62 241.9 671 29.7
TWI39G0400 Tripterygium wilfordii HOM05D004364 ORTHO05D006299 7.3e-62 241.9 303 47.9
Gohir.A08G020600 Gossypium hirsutum HOM05D004364 ORTHO05D006299 9.6e-62 241.5 678 30.2
Gorai.004G028800 Gossypium raimondii HOM05D004364 ORTHO05D006299 9.6e-62 241.5 678 30.2
Manes.03G117700 Manihot esculenta HOM05D004364 ORTHO05D006299 1.6e-61 240.7 344 42.4
Glyma.12G146600 Glycine max HOM05D004364 ORTHO05D006299 2.1e-61 240.4 671 29.2
Gohir.D08G031200 Gossypium hirsutum HOM05D004364 ORTHO05D006299 2.8e-61 240.0 678 30.1
Sabra11G0111700 Salix brachista HOM05D004364 ORTHO05D006299 8.1e-61 238.4 310 45.2
MD03G1217200 Malus domestica HOM05D004364 ORTHO05D006299 2.4e-60 236.9 310 46.1
RcHm_v2.0_Chr5g0036241 Rosa chinensis HOM05D004364 ORTHO05D006299 3.1e-60 236.5 310 45.8
CiPaw.11G178500 Carya illinoinensis HOM05D004364 ORTHO05D006299 5.3e-60 235.7 671 29.4
FAN11G0387 Fragaria x ananassa HOM05D004364 ORTHO05D006299 5.3e-60 235.7 314 46.2
FAN25G2975 Fragaria x ananassa HOM05D004364 ORTHO05D006299 5.3e-60 235.7 314 46.2
Nitab4.5_0000297g0190 Nicotiana tabacum HOM05D004364 ORTHO05D006299 6.9e-60 235.3 618 31.2
Psat5g247520 Pisum sativum HOM05D004364 ORTHO05D006299 6.9e-60 235.3 683 29.4
Cpa.g.sc12.20 Carica papaya HOM05D004364 ORTHO05D006299 9.0e-60 235.0 308 46.1
TPR.G32881 Trifolium pratense HOM05D004364 ORTHO05D006299 1.5e-59 234.2 303 45.9
Hma1.2p1_0015F.1_g010280 Hydrangea macrophylla HOM05D004364 ORTHO05D006299 5.8e-59 232.3 313 44.7
Thecc.07G069000 Theobroma cacao HOM05D004364 ORTHO05D006299 5.8e-59 232.3 304 45.7
Glyma.06G255000 Glycine max HOM05D004364 ORTHO05D006299 7.6e-59 231.9 310 43.9
Medtr2g081180 Medicago truncatula HOM05D004364 ORTHO05D006299 7.6e-59 231.9 303 44.9
FAN16G3737 Fragaria x ananassa HOM05D004364 ORTHO05D006299 9.9e-59 231.5 314 45.9
Lj3g0027191 Lotus japonicus HOM05D004364 ORTHO05D006299 1.3e-58 231.1 337 42.4
Phvul.011G156100 Phaseolus vulgaris HOM05D004364 ORTHO05D006299 4.9e-58 229.2 337 42.4
Aqoxy1G03944 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 6.4e-58 228.8 311 45.3
Ca_01795_v3 Cicer arietinum L. HOM05D004364 ORTHO05D006299 6.4e-58 228.8 303 44.6
Duzib170G0088 Durio zibethinus HOM05D004364 ORTHO05D006299 6.4e-58 228.8 303 46.2
Lj8C162G4 Lonicera japonica HOM05D004364 ORTHO05D006299 1.9e-57 227.3 303 44.6
Lsat_1_v5_gn_0_5341 Lactuca sativa HOM05D004364 ORTHO05D006299 2.4e-57 226.9 628 30.1
PGR083G1074 Punica granatum HOM05D004364 ORTHO05D006299 2.1e-56 223.8 331 42.3
Nn1g06827 Nelumbo nucifera HOM05D004364 ORTHO05D006299 2.7e-56 223.4 320 42.8
HanXRQChr13g0407291 Helianthus annuus HOM05D004364 ORTHO05D006299 6.0e-56 222.2 317 42.9
MSTRG.12935 Avicennia marina HOM05D004364 ORTHO05D006299 7.9e-56 221.9 676 28.7
Eucgr.F01066 Eucalyptus grandis HOM05D004364 ORTHO05D006299 1.0e-55 221.5 302 46.4
Oeu060533.1 Olea europaea HOM05D004364 ORTHO05D006299 1.0e-55 221.5 302 44.4
ECA240G1374 Erigeron canadensis HOM05D004364 ORTHO05D006299 1.3e-55 221.1 303 44.6
HanXRQChr03g0076071 Helianthus annuus HOM05D004364 ORTHO05D006299 1.7e-55 220.7 304 46.7
PSO832G2674 Papaver somniferum HOM05D004364 ORTHO05D006299 3.0e-55 219.9 303 42.9
COL.COLO4_09498 Corchorus olitorius HOM05D004364 ORTHO05D006299 5.1e-55 219.2 287 45.6
Peaxi162Scf01216g00070 Petunia axillaris HOM05D004364 ORTHO05D006299 6.6e-55 218.8 651 29.5
PSO210G4872 Papaver somniferum HOM05D004364 ORTHO05D006299 1.9e-54 217.2 303 41.9
unitig_21.g20140 Utricularia gibba HOM05D004364 ORTHO05D006299 2.5e-54 216.9 269 46.1
DCAR_008692 Daucus carota HOM05D004364 ORTHO05D006299 4.3e-54 216.1 681 28.0
Sp3g18670 Schrenkiella parvula HOM05D004364 ORTHO05D006299 7.3e-54 215.3 664 28.3
Sc16g0006700 Simmondsia chinensis HOM05D004364 ORTHO05D006299 7.3e-54 215.3 671 29.1
RhsimUnG0257500 Rhododendron simsii HOM05D004364 ORTHO05D006299 4.8e-53 212.6 369 38.8
CDE01G0428 Ceratophyllum demersum HOM05D004364 ORTHO05D006299 6.2e-53 212.2 311 43.4
SalBow7G1127 Salvia bowleyana HOM05D004364 ORTHO05D006299 6.2e-53 212.2 302 43.0
Ah.04g165340 Amaranthus hybridus HOM05D004364 ORTHO05D006299 1.8e-52 210.7 337 40.4
Migut.H01895 Erythranthe guttata HOM05D004364 ORTHO05D006299 1.8e-52 210.7 303 42.2
AL3G34510 Arabidopsis lyrata HOM05D004364 ORTHO05D006299 2.4e-52 210.3 665 28.3
THA.LOC104816919 Tarenaya hassleriana HOM05D004364 ORTHO05D006299 2.4e-52 210.3 685 27.9
Nitab4.5_0000092g0270 Nicotiana tabacum HOM05D004364 ORTHO05D006299 3.1e-52 209.9 634 28.7
AT3G20630 Arabidopsis thaliana HOM05D004364 ORTHO05D006299 6.9e-52 208.8 665 28.1
A03p41850 Brassica napus HOM05D004364 ORTHO05D006299 3.4e-51 206.5 665 28.3
BraA03t13338Z Brassica rapa HOM05D004364 ORTHO05D006299 4.5e-51 206.1 666 28.2
EL10Ac4g08041 Beta vulgaris HOM05D004364 ORTHO05D006299 1.3e-50 204.5 303 42.9
Cc05_g12790 Coffea canephora HOM05D004364 ORTHO05D006299 1.3e-50 204.5 303 42.6
Thhalv10020069m.g Eutrema salsugineum HOM05D004364 ORTHO05D006299 1.3e-50 204.5 304 43.4
SGA_v2.0_scaffold9G04963 Striga asiatica HOM05D004364 ORTHO05D006299 1.3e-50 204.5 303 41.6
AUR62029293 Chenopodium quinoa HOM05D004364 ORTHO05D006299 2.2e-50 203.8 337 40.4
BcaC01g03545 Brassica carinata HOM05D004364 ORTHO05D006299 2.9e-50 203.4 665 28.0
C03p51230 Brassica napus HOM05D004364 ORTHO05D006299 2.9e-50 203.4 665 28.0
BolC3t17413H Brassica oleracea HOM05D004364 ORTHO05D006299 3.8e-50 203.0 666 27.9
BcaB04g19118 Brassica carinata HOM05D004364 ORTHO05D006299 4.9e-50 202.6 665 27.8
BraA05t21700Z Brassica rapa HOM05D004364 ORTHO05D006299 6.4e-50 202.2 304 41.1
BcaB06g26128 Brassica carinata HOM05D004364 ORTHO05D006299 8.4e-50 201.8 303 41.3
A05p28190 Brassica napus HOM05D004364 ORTHO05D006299 1.4e-49 201.1 303 41.3
C05p43630 Brassica napus HOM05D004364 ORTHO05D006299 1.4e-49 201.1 303 41.3
Solyc07g063650.4 Solanum lycopersicum HOM05D004364 ORTHO05D006299 1.4e-49 201.1 320 40.3
CARHR096430 Cardamine hirsuta HOM05D004364 ORTHO05D006299 1.9e-49 200.7 664 27.3
Aa31LG8G7430 Aethionema arabicum HOM05D004364 ORTHO05D006299 2.4e-49 200.3 303 41.3
Sopen07g031830 Solanum pennellii HOM05D004364 ORTHO05D006299 2.4e-49 200.3 320 40.3
Aqoxy5G02435 Aquilegia oxysepala HOM05D004364 ORTHO05D006299 4.2e-49 199.5 304 42.4
AUR62041167 Chenopodium quinoa HOM05D004364 ORTHO05D006299 7.1e-49 198.7 671 27.9
Nitab4.5_0001386g0060 Nicotiana tabacum HOM05D004364 ORTHO05D006299 7.1e-49 198.7 320 40.0
BcaC05g28303 Brassica carinata HOM05D004364 ORTHO05D006299 1.2e-48 198.0 303 40.9
CAN.G162.111 Capsicum annuum HOM05D004364 ORTHO05D006299 4.6e-48 196.1 310 40.3
Carub.0003s2061 Capsella rubella HOM05D004364 ORTHO05D006299 6.0e-48 195.7 302 41.4
BolC5t33082H Brassica oleracea HOM05D004364 ORTHO05D006299 1.0e-47 194.9 304 40.5
Os01g0177200 Oryza sativa ssp. japonica HOM05D004364 ORTHO05D006299 3.0e-47 193.4 304 40.8
Zm00001eb336890 Zea mays HOM05D004364 ORTHO05D006299 4.3e-46 189.5 304 40.1
SEGI_22005 Sequoiadendron giganteum HOM05D004364 ORTHO05D006299 1.4e-44 184.5 302 39.1
QL08p017220 Quercus lobata HOM05D004364 ORTHO05D006299 1.8e-44 184.1 506 30.2
ATR1132G023 Amborella trichopoda HOM05D004364 ORTHO05D006299 3.1e-44 183.3 358 35.8
Mapoly0028s0083 Marchantia polymorpha HOM05D004364 ORTHO05D006299 2.6e-43 180.3 325 37.8
FAN21G1304 Fragaria x ananassa HOM05D004364 ORTHO05D006299 3.4e-43 179.9 279 42.3
vmacro09573 Vaccinium macrocarpon HOM05D004364 ORTHO05D006299 7.6e-43 178.7 434 31.1
Lj1g0005584 Lotus japonicus HOM05D004364 ORTHO05D006299 1.1e-41 174.9 273 41.4
HPP92_005995 Vanilla planifolia HOM05D004364 ORTHO05D006299 1.2e-40 171.4 317 36.3
Hund02178 Selenicereus undatus HOM05D004364 ORTHO05D006299 6.7e-39 165.6 321 35.8
Manes.15G081800 Manihot esculenta HOM05D004364 ORTHO05D006299 7.4e-38 162.2 364 34.9
Dinv22351 Davidia involucrata HOM05D004364 ORTHO05D006299 2.0e-35 154.1 506 27.5
Pp3c19_17130 Physcomitrium patens HOM05D004364 ORTHO05D006299 7.6e-35 152.1 347 33.1
TAR624G0100 Trochodendron aralioides HOM05D004364 ORTHO05D006299 1.1e-33 148.3 135 58.5
SMO347G0465 Selaginella moellendorffii HOM05D004364 ORTHO05D006299 1.6e-32 144.4 334 33.8
CBR_g17932 Chara braunii HOM05D004364 ORTHO05D006299 3.8e-26 123.2 147 46.3
Nitab4.5_0001252g0070 Nicotiana tabacum HOM05D004364 ORTHO05D006299 6.5e-26 122.5 391 29.4
arahy.Tifrunner.gnm1.ann1.CZGD0C Arachis hypogaea HOM05D004364 ORTHO05D006299 8.8e-23 112.1 88 65.9
DCAR_027147 Daucus carota HOM05D004364 ORTHO05D006299 3.3e-22 110.2 106 53.8
GSVIVG01015715001 Vitis vinifera HOM05D004364 ORTHO05D019261 9.1e-20 102.1 69 73.9
PRCOL_00003961 Prasinoderma coloniale HOM05D004364 ORTHO05D006299 5.0e-18 96.3 324 28.1
GSVIVG01015714001 Vitis vinifera HOM05D004364 ORTHO05D019261 5.0e-18 96.3 85 58.8
Peaxi162Scf00177g00118 Petunia axillaris HOM05D004364 ORTHO05D006299 4.2e-17 93.2 72 63.9
SEGI_31233 Sequoiadendron giganteum HOM05D004364 ORTHO05D019261 8.8e-15 85.5 85 54.1
GSVIVG01014462001 Vitis vinifera HOM05D004364 ORTHO05D019261 1.7e-13 81.3 60 68.3
Actinidia35287 Actinidia chinensis HOM05D004364 ORTHO05D006299 3.7e-13 80.1 42 83.3
VMungo1127G0244 Vigna mungo HOM05D004364 ORTHO05D006299 1.1e-12 78.6 93 46.2
TAR011G0002 Trochodendron aralioides HOM05D004364 ORTHO05D019261 6.5e-10 69.3 58 60.3
MCO15G328 Micromonas commoda HOM05D004364 ORTHO05D006299 8.5e-10 68.9 151 31.8
TPR.G1046 Trifolium pratense HOM05D004364 ORTHO05D019261 2.5e-09 67.4 71 54.9
Rhsim03G0198500 Rhododendron simsii HOM05D004364 ORTHO05D006299 1.2e-08 65.1 33 81.8
Lj8A161G44 Lonicera japonica HOM05D004364 ORTHO05D006299 8.0e-08 62.4 47 59.6
SHI10080 Sapria himalayana HOM05D004364 ORTHO05D006299 5.2e-07 59.7 32 81.2
Medtr8g464880 Medicago truncatula HOM05D004364 ORTHO05D019261 1.5e-06 58.2 35 68.6
Lj1g0025632 Lotus japonicus HOM05D004364 ORTHO05D006299 5.7e-06 56.2 106 37.7


User provided reference genes

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